Name: Streptomyces filamentosus DSM 40122
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 159104

Type strain:

Species: Streptomyces filamentosus

Culture col. no.: DSM 40122, CBS 941.68, ATCC 23958, IAUR 4192, IFO 12910, ISP 5122, JCM 4412, RIA 1125, NBRC 12910, BCRC 13771, CGMCC 4.1790, CGMCC 4.1871, CGMCC 4.2073, KCTC 9568, NCIMB 13008, NRRL B-5411

Strain history: KCC S-0412 <-- IFO 12910 <-- SAJ <-- ISP 5122 <-- IAUR 4192.

NCBI tax ID(s): 67294 (species)

Other strains from Streptomyces filamentosus

S. filamentosus 1-C-9, DSM 40022, ATCC 19753, CBS ... (type strain)
S. filamentosus ST028370(HKI), Prs188,
S. filamentosus ST032173(HKI),

Section

Streptomyces filamentosus DSM 40122 is a mesophilic bacterium that builds an aerial mycelium and was isolated from soil.

mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	07-12-2022 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	Streptomycetales
	Family	Streptomycetaceae
	Genus	*Streptomyces*
	Species	**Streptomyces filamentosus**
	Full Scientific Name (PNU)	Streptomyces filamentosus Okami and Umezawa 1953 (Approved Lists 1980)

Synonym

Streptomyces roseosporus

Information on morphological and physiological properties Morphology

[Ref.: #69244]	Colony color	Ivory (1014)
[Ref.: #69244]	Cultivation medium used	ISP 3

[Ref.: #69244]	Colony color	Ivory (1014)
[Ref.: #69244]	Cultivation medium used	ISP 5

[Ref.: #69244]	Colony color	Ivory (1014)
[Ref.: #69244]	Cultivation medium used	ISP 7

[Ref.: #69244]	Colony color	Sand yellow (1002)
[Ref.: #69244]	Cultivation medium used	ISP 2

[Ref.: #69244]	Colony color	Sand yellow (1002)
[Ref.: #69244]	Cultivation medium used	ISP 4

[Ref.: #69244]	Colony color	Sand yellow (1002)
[Ref.: #69244]	Cultivation medium used	ISP 6

[Ref.: #69244]	Colony color	Sand yellow (1002)
[Ref.: #69244]	Cultivation medium used	suter with tyrosine

[Ref.: #69244]	Colony color	Sand yellow (1002)
[Ref.: #69244]	Cultivation medium used	suter without tyrosine

[Ref.: #69244]	Pigment production	no
[Ref.: #69244]	Pigment name	Melanin
[Ref.: #69244]	Pigment production	yes
[Ref.: #69244]	Pigmentation color	Sand yellow (1002)
[Ref.: #69244]	Pigment name	soluble pigment

[Ref.: #69244]	Multicellular complex forming ability	yes
[Ref.: #69244]	Multicellular complex name	Aerial mycelium
[Ref.: #69244]	Multicellular complex color	Grey white (9002)
[Ref.: #69244]	Medium Name (multicellularity)	ISP 2

[Ref.: #69244]	Multicellular complex forming ability	yes
[Ref.: #69244]	Multicellular complex name	Aerial mycelium
[Ref.: #69244]	Multicellular complex color	Cream (9001)
[Ref.: #69244]	Medium Name (multicellularity)	ISP 3

[Ref.: #69244]	Multicellular complex forming ability	yes
[Ref.: #69244]	Multicellular complex name	Aerial mycelium
[Ref.: #69244]	Multicellular complex color	Cream (9001)
[Ref.: #69244]	Medium Name (multicellularity)	ISP 4

[Ref.: #69244]	Multicellular complex forming ability	yes
[Ref.: #69244]	Multicellular complex name	Aerial mycelium
[Ref.: #69244]	Multicellular complex color	Traffic white (9016)
[Ref.: #69244]	Medium Name (multicellularity)	ISP 5

[Ref.: #69244]	Multicellular complex forming ability	no
[Ref.: #69244]	Multicellular complex name	Aerial mycelium
[Ref.: #69244]	Medium Name (multicellularity)	ISP 6

[Ref.: #69244]	Multicellular complex forming ability	yes
[Ref.: #69244]	Multicellular complex name	Aerial mycelium
[Ref.: #69244]	Multicellular complex color	Oyster white (1013)
[Ref.: #69244]	Medium Name (multicellularity)	ISP 7

[Ref.: #69244]	Multicellular complex forming ability	no
[Ref.: #69244]	Multicellular complex name	Aerial mycelium
[Ref.: #69244]	Medium Name (multicellularity)	suter with tyrosine

[Ref.: #69244]	Multicellular complex forming ability	yes
[Ref.: #69244]	Multicellular complex name	Aerial mycelium
[Ref.: #69244]	Multicellular complex color	Cream (9001)
[Ref.: #69244]	Medium Name (multicellularity)	suter without tyrosine

Multimedia content

[Ref.: #65927]

Caption:

Medium 987 28°C

[Ref.: #65927]

Intellectual property rights:

[Ref.: #69244]

Caption:

Plates (65, ISP2, ISP3, ISP4, ISP5, ISP7)

[Ref.: #69244]

Intellectual property rights:

Helmholtz-Zentrum für Infektionsforschung GmbH

[Ref.: #69244]

Caption:

Plates (65, ISP2, ISP3, ISP4, ISP5, ISP7)

[Ref.: #69244]

Intellectual property rights:

Helmholtz-Zentrum für Infektionsforschung GmbH

Information on culture and growth conditions Culture and growth conditions

[Ref.: #65927]

Culture medium

GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)

[Ref.: #65927]

Culture medium growth

[Ref.: #65927]

Culture medium link

Medium recipe provided by DSMZ

[Ref.: #65927]

Culture medium composition

expand / minimize

[Ref.: #65927]

Culture medium

ISP2 MEDIUM (DSMZ Medium 987)

[Ref.: #65927]

Culture medium growth

[Ref.: #65927]

Culture medium link

Medium recipe provided by DSMZ

[Ref.: #65927]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #65927]			growth	28 °C
[Ref.: #67770]			growth	28 °C

[Ref.: #65927]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #69244]		NaCl		growth	0-5	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #69244]	arabinose ChEBI	+	growth
[Ref.: #69244]	cellulose ChEBI	-	growth
[Ref.: #68379]	D-glucose ChEBI	+	fermentation	* from API Coryne
[Ref.: #68379]	D-mannitol ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	D-ribose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	D-xylose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	esculin ChEBI	+	hydrolysis	* from API Coryne
[Ref.: #69244]	fructose ChEBI	-	growth
[Ref.: #68379]	gelatin ChEBI	+	hydrolysis	* from API Coryne
[Ref.: #69244]	glucose ChEBI	+	growth
[Ref.: #68379]	glycogen ChEBI	-	fermentation	* from API Coryne
[Ref.: #69244]	inositol ChEBI	-	growth
[Ref.: #68379]	lactose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	maltose ChEBI	-	fermentation	* from API Coryne
[Ref.: #69244]	mannose ChEBI	-	growth
[Ref.: #68379]	nitrate ChEBI	+	reduction	* from API Coryne
[Ref.: #69244]	raffinose ChEBI	-	growth
[Ref.: #69244]	rhamnose ChEBI	+	growth
[Ref.: #69244]	sucrose ChEBI	-	growth
[Ref.: #68379]	sucrose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	urea ChEBI	-	hydrolysis	* from API Coryne
[Ref.: #69244]	xylose ChEBI	+	growth
	Only first 10 entries are displayed. Click here to see all.

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #68379]	alkaline phosphatase	+	3.1.3.1	* from API Coryne, API zym
[Ref.: #68382]	alpha-chymotrypsin	+	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	-	3.2.1.22	* from API zym
[Ref.: #68379]	alpha-glucosidase	+	3.2.1.20	* from API Coryne, API zym
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #68379]	beta-galactosidase	+	3.2.1.23	* from API Coryne, API zym
[Ref.: #68379]	beta-glucosidase	+	3.2.1.21	* from API Coryne, API zym
[Ref.: #68379]	beta-glucuronidase	-	3.2.1.31	* from API Coryne, API zym
[Ref.: #68379]	gelatinase	+		* from API Coryne
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #68382]	lipase (C 14)	+		* from API zym
[Ref.: #68379]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API Coryne, API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	+		* from API zym
[Ref.: #68379]	pyrazinamidase	-	3.5.1.B15	* from API Coryne
[Ref.: #68379]	pyrrolidonyl arylamidase	-	3.4.19.3	* from API Coryne
[Ref.: #68382]	trypsin	+	3.4.21.4	* from API zym
[Ref.: #68379]	urease	-	3.5.1.5	* from API Coryne
[Ref.: #68382]	valine arylamidase	+		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® Coryne:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Reduction of nitrateNIT	PyrazinamidasePYZ	Pyrrolidonyl arylamidasePYRA	Alkaline phosphatasePAL	beta-Glucuronidasebeta GUR	beta-Galactosidasebeta GAL	alpha-Glucosidasealpha GLU	N-Acetyl-beta-Glucosidasebeta NAG	Esculin hydrolysis/beta-GlucosidaseESC	Urease/urea hydrolysisURE	Gelatinase/gelatin hydrolysisGEL	Control fermentationControl	Fermentation of D-glucoseGLU	Fermentation of D-riboseRIB	Fermentation of D-xyloseXYL	Fermentation of D-mannitolMAN	Fermentation of maltoseMAL	Fermentation of lactoseLAC	Fermentation of sucroseSAC	Fermentation of glycogenGLYG	CatalaseCAT
[Ref.: #69244]	3738	+	-	-	+	-	+	+	-	+	-	+	not determinedn.d.	+	-	-	-	-	-	-	-	not determinedn.d.

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #69244]	5922	not determinedn.d.	+	+/-	+/-	+	+	+	+/-	+	+	+	+	-	+	-	+	+	-	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #65927]	Sample type/isolated from	soil
* marker position based on {}

Isolation sources categories

#Environmental

#Terrestrial

#Soil

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #65927]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Streptomyces filamentosus gene for 16S rRNA, partial sequence, strain: NBRC 12910	AB184238	1457	ENA	67294 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Streptomyces filamentosus strain ATCC 23958	67294.3	complete	PATRIC	67294 tax ID	*
[Ref.: #67770]	Streptomyces filamentosus ATCC 23958	GCA_008634015	contig	GenBank	67294 tax ID

Availability in culture collections External links

[Ref.: #65927]

Culture collection no.

DSM 40122, CBS 941.68, ATCC 23958, IAUR 4192, IFO 12910, ISP 5122, JCM 4412, RIA 1125, NBRC 12910, BCRC 13771, CGMCC 4.1790, CGMCC 4.1871, CGMCC 4.2073, KCTC 9568, NCIMB 13008, NRRL B-5411

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#65927

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 40122

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68379

Automatically annotated from API Coryne .

#68382

Automatically annotated from API zym .

#69244

Wink, J.: Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

* These data were automatically processed and therefore are not curated

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