Strain identifier

BacDive ID: 15140

Type strain: Yes

Species: Streptomyces filipinensis

Strain Designation: 114-8

Strain history: KCC S-0369 <-- IFO 12860 <-- SAJ <-- ISP 5112 <-- D. Gottlieb 114-8.

NCBI tax ID(s): 66887 (species)

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General

@ref: 9323

BacDive-ID: 15140

DSM-Number: 40112

keywords: genome sequence, 16S sequence, Bacteria, spore-forming, mesophilic, Gram-positive

description: Streptomyces filipinensis 114-8 is a spore-forming, mesophilic, Gram-positive bacterium that was isolated from soil.

NCBI tax id

  • NCBI tax id: 66887
  • Matching level: species

strain history

@refhistory
9323<- E.B. Shirling, ISP <- D. Gottlieb, 114-8
67770KCC S-0369 <-- IFO 12860 <-- SAJ <-- ISP 5112 <-- D. Gottlieb 114-8.

doi: 10.13145/bacdive15140.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Kitasatosporales
  • family: Streptomycetaceae
  • genus: Streptomyces
  • species: Streptomyces filipinensis
  • full scientific name: Streptomyces filipinensis Ammann et al. 1955 (Approved Lists 1980)

@ref: 9323

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Streptomycetaceae

genus: Streptomyces

species: Streptomyces filipinensis

full scientific name: Streptomyces filipinensis Ammann et al. 1955

strain designation: 114-8

type strain: yes

Morphology

cell morphology

  • @ref: 69480
  • gram stain: positive
  • confidence: 100

multimedia

  • @ref: 9323
  • multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_40112.jpg
  • caption: Medium 65 28°C
  • intellectual property rights: © Leibniz-Institut DSMZ

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
9323GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)yeshttps://mediadive.dsmz.de/medium/65Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water
9323ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84)yeshttps://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium84.pdf

culture temp

@refgrowthtypetemperaturerange
18538positiveoptimum28mesophilic
9323positivegrowth28mesophilic
67770positivegrowth28mesophilic

Physiology and metabolism

tolerance

  • @ref: 18538
  • compound: Lysozyme
  • percentage: 0.1

spore formation

@refspore formationconfidence
69481yes100
69480yes100

compound production

  • @ref: 9323
  • compound: filipin

halophily

  • @ref: 18538
  • salt: NaCl
  • growth: positive
  • tested relation: maximum
  • concentration: 2.5 %

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
1853817234glucose+
1853822599arabinose-
1853817992sucrose+
1853818222xylose+
1853817268myo-inositol+
1853829864mannitol+
1853828757fructose+
1853826546rhamnose-
1853816634raffinose+
1853862968cellulose-
683685291gelatin+hydrolysis
6836827897tryptophan-energy source
6836816199urea+hydrolysis
6836816947citrate-assimilation
6836818257ornithine-degradation
6836825094lysine-degradation
6836829016arginine-hydrolysis

metabolite production

@refChebi-IDmetaboliteproduction
6777083267filipinyes
6836815688acetoinno
6836835581indoleno
6836816136hydrogen sulfideno

metabolite tests

@refChebi-IDmetabolitevoges-proskauer-testindole test
6836815688acetoin-
6836835581indole-

enzymes

@refvalueactivityec
68368gelatinase+
68368tryptophan deaminase-4.1.99.1
68368urease+3.5.1.5
68368ornithine decarboxylase-4.1.1.17
68368lysine decarboxylase-4.1.1.18
68368arginine dihydrolase-3.5.3.6
68368beta-galactosidase-3.2.1.23

API 20E

@refONPGADH ArgLDC LysODCCITH2SURETDA TrpINDVPGEL
18538------+---+

Isolation, sampling and environmental information

isolation

  • @ref: 9323
  • sample type: soil
  • country: Philippines
  • origin.country: PHL
  • continent: Asia

isolation source categories

  • Cat1: #Environmental
  • Cat2: #Terrestrial
  • Cat3: #Soil

taxonmaps

  • @ref: 69479
  • File name: preview.99_7980.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_15;96_102;97_224;98_253;99_7980&stattab=map
  • Last taxonomy: Streptomyces
  • 16S sequence: AY999913
  • Sequence Identity:
  • Total samples: 787
  • soil counts: 547
  • aquatic counts: 19
  • animal counts: 29
  • plant counts: 192

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
185381German classification
93231Risk group (German classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Streptomyces filipinensis gene for 16S rRNA, partial sequenceAB122733564ena66887
20218Streptomyces filipinensis gene for 16S ribosomal RNA, partial sequence, strain: JCM 4369D44086120ena66887
20218Streptomyces filipinensis gene for 16S rRNA, partial sequence, strain: NBRC 12860AB1841981470ena66887
20218Streptomyces filipinensis strain NRRL 2437 16S ribosomal RNA gene, partial sequenceAY9999131367ena66887

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Streptomyces filipinensis JCM 4369GCA_014649495scaffoldncbi66887
66792Streptomyces filipinensis strain JCM 436966887.5wgspatric66887

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingyes100no
flagellatedno97.953no
gram-positiveyes89.275no
anaerobicno99.051no
aerobicyes93.766no
halophileno95.111no
spore-formingyes93.969no
thermophileno97.857yes
glucose-utilyes89.042yes
motileno93.209no
glucose-fermentno91.002no

External links

@ref: 9323

culture collection no.: DSM 40112, ATCC 23905, CBS 309.56, CBS 801.68, DSM 41155, ETH 20722, ETH 28584, ETH 28594, IFO 12860, ISP 5112, JCM 4369, KCC S-0369, NBRC 12860, NRRL 2437, RIA 1124, BCRC 11472, CGMCC 4.1452, LMG 19333, VKM Ac-966

straininfo link

  • @ref: 84244
  • straininfo: 13345

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny23959832Streptomyces yaanensis sp. nov., isolated from soil.Zheng J, Zhang X, Xin Y, Han X, Ni S, Zhang JInt J Syst Evol Microbiol10.1099/ijs.0.054734-02013Bacterial Typing Techniques, China, DNA, Bacterial/genetics, Diaminopimelic Acid/chemistry, Fatty Acids/chemistry, Molecular Sequence Data, Nucleic Acid Hybridization, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology, Streptomyces/*classification/genetics/isolation & purification, Vitamin K 2/analogs & derivatives/chemistryGenetics
Phylogeny30896386Streptomyces fodineus sp. nov., an actinobacterium with antifungal activity isolated from mine area soil.Kim MK, Kang HJ, Roh SG, Park JS, Kim SBInt J Syst Evol Microbiol10.1099/ijsem.0.0033532019Antibiosis, Antifungal Agents, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Diaminopimelic Acid/chemistry, Fatty Acids/chemistry, *Mining, Peptidoglycan/chemistry, Phospholipids/chemistry, *Phylogeny, Pigmentation, RNA, Ribosomal, 16S/genetics, Republic of Korea, Sequence Analysis, DNA, *Soil Microbiology, Streptomyces/*classification/isolation & purification, Vitamin K 2/analogs & derivatives/chemistryTranscriptome
Phylogeny33174827Streptomyces phaeolivaceus sp. nov. and Streptomyces broussonetiae sp. nov., isolated from the leaves and rhizosphere soil of Broussonetia papyrifera.Mo P, Liu J, Zhao Y, Xu ZInt J Syst Evol Microbiol10.1099/ijsem.0.0045562020Bacterial Typing Techniques, Base Composition, Broussonetia/*microbiology, China, DNA, Bacterial/genetics, Fatty Acids/chemistry, Nucleic Acid Hybridization, *Phylogeny, Plant Leaves, RNA, Ribosomal, 16S/genetics, Rhizosphere, Sequence Analysis, DNA, *Soil Microbiology, Streptomyces/*classification/isolation & purificationTranscriptome
Phylogeny35583452Streptomyces barringtoniae sp. nov., isolated from rhizosphere of plant with antioxidative potential.Wai KZ, Luechapudiporn R, Tedsree N, Phongsopitanun W, Malisorn K, Tanasupawat SInt J Syst Evol Microbiol10.1099/ijsem.0.0053642022Antioxidants, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Hydrogen Peroxide, Phosphatidylinositols/analysis, Phospholipids/chemistry, Phylogeny, RNA, Ribosomal, 16S/genetics, *Rhizosphere, Sequence Analysis, DNA, *StreptomycesTranscriptome

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
9323Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 40112)https://www.dsmz.de/collection/catalogue/details/culture/DSM-40112
18538Wink, J.http://www.dsmz.de/microorganisms/wink_pdf/DSM40112.pdfCompendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
68368Automatically annotated from API 20E
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch10.21203/rs.3.rs-2527258/v1Predictions based on the model GenomeNet Sporulation v. 1
84244Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID13345.1StrainInfo: A central database for resolving microbial strain identifiers