Actinomyces naeslundii CCUG 37599 is a bacterium that was isolated from Human cerebrospinal fluid,newborn.
genome sequence 16S sequence Bacteria| @ref 20215 |
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|
| Domain Bacteria |
| Phylum Actinomycetota |
| Class Actinomycetes |
| Order Actinomycetales |
| Family Actinomycetaceae |
| Genus Actinomyces |
| Species Actinomyces naeslundii |
| Full scientific name Actinomyces naeslundii corrig. Thompson and Lovestedt 1951 (Approved Lists 1980) |
| Synonyms (1) |
| Cat1 | Cat2 | Cat3 | |
|---|---|---|---|
| #Host | #Human | #Child | |
| #Host Body Product | #Fluids | #Cerebrospinal fluid | |
| #Infection | #Patient | - |
| @ref | Sample type | Host species | Sampling date | Geographic location | Country | Country ISO 3 Code | Continent | |
|---|---|---|---|---|---|---|---|---|
| 53756 | Human cerebrospinal fluid,newborn | Homo sapiens | 1997-02-26 | Uppsala | Sweden | SWE | Europe |
| @ref | Description | Assembly level | INSDC accession | BV-BRC accession | NCBI tax ID | Score | |
|---|---|---|---|---|---|---|---|
| 66792 | ASM195644v1 assembly for Actinomyces naeslundii CCUG 37599 | scaffold | 1655 | 61.38 |
| @ref | Description | Accession | Length | Database | NCBI tax ID | |
|---|---|---|---|---|---|---|
| 124043 | Actinomyces naeslundii strain WE7B1 16S ribosomal RNA gene, partial sequence. | JF776381 | 1384 | 1655 | ||
| 124043 | Actinomyces naeslundii strain WE7B1 16S ribosomal RNA gene, partial sequence. | JF776382 | 1386 | 1655 | ||
| 124043 | Actinomyces naeslundii strain WE7B1 16S ribosomal RNA gene, partial sequence. | JF776383 | 1372 | 1655 | ||
| 124043 | Actinomyces naeslundii strain WE7B1 16S ribosomal RNA gene, partial sequence. | JF776384 | 1384 | 1655 | ||
| 124043 | Actinomyces naeslundii strain WE7B1 16S ribosomal RNA gene, partial sequence. | JF776385 | 1383 | 1655 | ||
| 124043 | Actinomyces naeslundii strain WE7B1 16S ribosomal RNA gene, partial sequence. | JF776386 | 1371 | 1655 | ||
| 124043 | Actinomyces naeslundii strain WE7B1 16S ribosomal RNA gene, partial sequence. | JF776387 | 1382 | 1655 | ||
| 124043 | Actinomyces naeslundii strain WE7B1 16S ribosomal RNA gene, partial sequence. | JF776388 | 1384 | 1655 | ||
| 124043 | Actinomyces naeslundii strain WE7B1 16S ribosomal RNA gene, partial sequence. | JF776389 | 1384 | 1655 | ||
| 124043 | Actinomyces naeslundii strain WE7B1 16S ribosomal RNA gene, partial sequence. | JF776390 | 1383 | 1655 | ||
| 124043 | Actinomyces naeslundii strain WE7B1 16S ribosomal RNA gene, partial sequence. | JF776391 | 1383 | 1655 | ||
| 124043 | Actinomyces naeslundii strain CCUG 37599 16S ribosomal RNA gene, partial sequence. | EU667410 | 482 | 1655 |
| @ref | Trait | Model | Prediction | Confidence in % | In training data |
|---|---|---|---|---|---|
| 125439 | oxygen_tolerance | BacteriaNetⓘ | anaerobe | 91.04 | no |
| 125439 | gram_stain | BacteriaNetⓘ | positive | 86.82 | no |
| 125439 | motility | BacteriaNetⓘ | no | 83.78 | no |
| 125439 | spore_formation | BacteriaNetⓘ | no | 97.60 | no |
| @ref | Trait | Model | Prediction | Confidence in % | In training data |
|---|---|---|---|---|---|
| 125438 | gram-positive | gram-positiveⓘ | yes | 91.76 | no |
| 125438 | anaerobic | anaerobicⓘ | no | 75.10 | no |
| 125438 | aerobic | aerobicⓘ | no | 77.89 | no |
| 125438 | spore-forming | spore-formingⓘ | no | 81.11 | no |
| 125438 | thermophilic | thermophileⓘ | no | 95.53 | no |
| 125438 | flagellated | motile2+ⓘ | no | 92.88 | no |
| Topic | Title | Authors | Journal | DOI | Year | |
|---|---|---|---|---|---|---|
| Genetics | Genomic Diversity among Actinomyces naeslundii Strains and Closely Related Species. | Mughal SR, Niazi SA, Do T, Gilbert SC, Didelot X, Radford DR, Beighton D. | Microorganisms | 10.3390/microorganisms11020254 | 2023 | |
| Enzymology | Evidence for recombination between a sialidase (nanH) of Actinomyces naeslundii and Actinomyces oris, previously named 'Actinomyces naeslundii genospecies 1 and 2'. | Do T, Henssge U, Gilbert SC, Clark D, Beighton D. | FEMS Microbiol Lett | 10.1111/j.1574-6968.2008.01336.x | 2008 | |
| Phylogeny | Emended description of Actinomyces naeslundii and descriptions of Actinomyces oris sp. nov. and Actinomyces johnsonii sp. nov., previously identified as Actinomyces naeslundii genospecies 1, 2 and WVA 963. | Henssge U, Do T, Radford DR, Gilbert SC, Clark D, Beighton D. | Int J Syst Evol Microbiol | 10.1099/ijs.0.000950-0 | 2009 |
| #20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 ) |
| #53756 | Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 37599 |
| #66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) . |
| #124043 | Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy . |
| #125438 | Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 ) |
| #125439 | Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 . |
| #126262 | A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 ) |
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https://doi.org/10.13145/bacdive149367.20260601.11
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