Strain identifier
version 8.1 (current version)
General
@ref: 53756
BacDive-ID: 149367
keywords: genome sequence, Bacteria
description: Actinomyces naeslundii CCUG 37599 is a bacterium that was isolated from Human cerebrospinal fluid,newborn.
NCBI tax id
- NCBI tax id: 1655
- Matching level: species
doi: 10.13145/bacdive149367.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Actinomycetales
- family: Actinomycetaceae
- genus: Actinomyces
- species: Actinomyces naeslundii
- full scientific name: Actinomyces naeslundii corrig. Thompson and Lovestedt 1951 (Approved Lists 1980)
synonyms
- @ref: 20215
- synonym: Actinomyces naeslundi
@ref: 53756
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Actinomycetales
family: Actinomycetaceae
genus: Actinomyces
species: Actinomyces naeslundii
type strain: no
Morphology
cell morphology
| @ref | motility | confidence | gram stain |
|---|---|---|---|
| 69480 | no | 95.988 | |
| 69480 | 100 | positive |
Physiology and metabolism
spore formation
- @ref: 69480
- spore formation: no
- confidence: 99.997
Isolation, sampling and environmental information
isolation
- @ref: 53756
- sample type: Human cerebrospinal fluid,newborn
- sampling date: 1997-02-26
- geographic location: Uppsala
- country: Sweden
- origin.country: SWE
- continent: Europe
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Host | #Human | #Child |
| #Host Body Product | #Fluids | #Cerebrospinal fluid |
| #Infection | #Patient |
Sequence information
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Actinomyces naeslundii CCUG 37599 | GCA_001956445 | scaffold | ncbi | 1655 |
| 66792 | Actinomyces naeslundii strain CCUG 37599 | 1655.41 | wgs | patric | 1655 |
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| spore-forming | no | 77 | no |
| flagellated | no | 96.565 | no |
| gram-positive | yes | 94.925 | no |
| anaerobic | no | 77.751 | no |
| aerobic | no | 91.22 | no |
| halophile | no | 86.89 | no |
| spore-forming | no | 94.062 | no |
| glucose-util | yes | 88.232 | no |
| thermophile | no | 96.473 | no |
| motile | no | 91.626 | no |
| glucose-ferment | yes | 82.238 | no |
External links
@ref: 53756
culture collection no.: CCUG 37599
straininfo link
- @ref: 103788
- straininfo: 51321
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 53756 | Curators of the CCUG | https://www.ccug.se/strain?id=37599 | Culture Collection University of Gothenburg (CCUG) (CCUG 37599) | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 103788 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID51321.1 |