Strain identifier
version 9.1 (current version)
General
@ref: 53756
BacDive-ID: 149367
keywords: genome sequence, 16S sequence, Bacteria, Gram-positive
description: Actinomyces naeslundii CCUG 37599 is a Gram-positive bacterium that was isolated from Human cerebrospinal fluid,newborn.
NCBI tax id
- NCBI tax id: 1655
- Matching level: species
doi: 10.13145/bacdive149367.20240916.9.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Actinomycetales
- family: Actinomycetaceae
- genus: Actinomyces
- species: Actinomyces naeslundii
- full scientific name: Actinomyces naeslundii corrig. Thompson and Lovestedt 1951 (Approved Lists 1980)
synonyms
- @ref: 20215
- synonym: Actinomyces naeslundi
@ref: 53756
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Actinomycetales
family: Actinomycetaceae
genus: Actinomyces
species: Actinomyces naeslundii
type strain: no
Morphology
cell morphology
| @ref | motility | confidence | gram stain |
|---|---|---|---|
| 69480 | no | 92.875 | |
| 69480 | 91.76 | positive |
Isolation, sampling and environmental information
isolation
- @ref: 53756
- sample type: Human cerebrospinal fluid,newborn
- sampling date: 1997-02-26
- geographic location: Uppsala
- country: Sweden
- origin.country: SWE
- continent: Europe
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Host | #Human | #Child |
| #Host Body Product | #Fluids | #Cerebrospinal fluid |
| #Infection | #Patient |
Sequence information
16S sequences
| @ref | description | accession | length | database | NCBI tax ID |
|---|---|---|---|---|---|
| 124043 | Actinomyces naeslundii strain WE7B1 16S ribosomal RNA gene, partial sequence. | JF776381 | 1384 | nuccore | 1655 |
| 124043 | Actinomyces naeslundii strain WE7B1 16S ribosomal RNA gene, partial sequence. | JF776382 | 1386 | nuccore | 1655 |
| 124043 | Actinomyces naeslundii strain WE7B1 16S ribosomal RNA gene, partial sequence. | JF776383 | 1372 | nuccore | 1655 |
| 124043 | Actinomyces naeslundii strain WE7B1 16S ribosomal RNA gene, partial sequence. | JF776384 | 1384 | nuccore | 1655 |
| 124043 | Actinomyces naeslundii strain WE7B1 16S ribosomal RNA gene, partial sequence. | JF776385 | 1383 | nuccore | 1655 |
| 124043 | Actinomyces naeslundii strain WE7B1 16S ribosomal RNA gene, partial sequence. | JF776386 | 1371 | nuccore | 1655 |
| 124043 | Actinomyces naeslundii strain WE7B1 16S ribosomal RNA gene, partial sequence. | JF776387 | 1382 | nuccore | 1655 |
| 124043 | Actinomyces naeslundii strain WE7B1 16S ribosomal RNA gene, partial sequence. | JF776388 | 1384 | nuccore | 1655 |
| 124043 | Actinomyces naeslundii strain WE7B1 16S ribosomal RNA gene, partial sequence. | JF776389 | 1384 | nuccore | 1655 |
| 124043 | Actinomyces naeslundii strain WE7B1 16S ribosomal RNA gene, partial sequence. | JF776390 | 1383 | nuccore | 1655 |
| 124043 | Actinomyces naeslundii strain WE7B1 16S ribosomal RNA gene, partial sequence. | JF776391 | 1383 | nuccore | 1655 |
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Actinomyces naeslundii CCUG 37599 | GCA_001956445 | scaffold | ncbi | 1655 |
| 66792 | Actinomyces naeslundii strain CCUG 37599 | 1655.41 | wgs | patric | 1655 |
Genome-based predictions
predictions
| @ref | trait | model | description | prediction | confidence | training_data |
|---|---|---|---|---|---|---|
| 69481 | spore-forming | spore-forming | Ability to form endo- or exospores | no | 77 | no |
| 69480 | gram-positive | gram-positive | Positive reaction to Gram-staining | yes | 91.76 | no |
| 69480 | anaerobic | anaerobic | Ability to grow under anoxygenic conditions (including facultative anaerobes) | no | 75.095 | no |
| 69480 | aerobic | aerobic | Ability to grow under oxygenic conditions (including facultative aerobes) | no | 77.893 | no |
| 69480 | spore-forming | spore-forming | Ability to form endo- or exospores | no | 81.112 | no |
| 69480 | thermophilic | thermophile | Ability to grow at temperatures above or equal to 45°C | no | 95.528 | no |
| 69480 | flagellated | motile2+ | Ability to perform flagellated movement | no | 92.875 | no |
External links
@ref: 53756
culture collection no.: CCUG 37599
straininfo link
- @ref: 103788
- straininfo: 51321
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 53756 | Curators of the CCUG | https://www.ccug.se/strain?id=37599 | Culture Collection University of Gothenburg (CCUG) (CCUG 37599) | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | Predictions based on the model GenomeNet Sporulation v. 1 | 10.21203/rs.3.rs-2527258/v1 | |
| 103788 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID51321.1 | |
| 124043 | Dr. Isabel Schober, Dr. Julia Koblitz | Data extracted from sequence databases, automatically matched based on designation and taxonomy |