Name: Streptomyces albaduncus 13246
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 14888

Type strain:

Species: Streptomyces albaduncus

Strain Designation: 13246

Culture col. no.: DSM 40478, ATCC 14698, CBS 698.72, IFO 13397, ISP 5478, JCM 4715, KCC S-0715, NBRC 13397, RIA 1358, CECT 3226, CGMCC 4.1580, IMSNU 20132, KCTC 1741, MTCC 924, NRRL B-3605, VKM Ac-1753

Strain history: KCC S-0715 <-- IFO 13397 <-- SAJ <-- ISP 5478 <-- ATCC 14698 <-- Bristol Labs. <-- Bristol-Banyu Res. Inst.; 13246.

NCBI tax ID(s): 68172 (species)

SI-ID 36154

ATCC 14698, IFO 13397, DSM 40478, JCM 4715, NRRL B-3605, VKM Ac-1753, CBS 698.72, CECT 3226, KCTC 1741, AS 4.158, NBRC 13397, BCRC 16204, CCRC 16204, KACC 20003, CGMCC 4.1580

Special Collections

Other strains from Streptomyces albaduncus

Section

Streptomyces albaduncus 13246 is a spore-forming bacterium that builds an aerial mycelium and produces antibiotic compounds.

antibiotic compound production
spore-forming
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Kitasatosporales*
	Family	*Streptomycetaceae*
	Genus	*Streptomyces*
	Species	**Streptomyces albaduncus**
	Full Scientific Name (LPSN)	Streptomyces albaduncus Tsukiura et al. 1964 (Approved Lists 1980)

Information on morphological and physiological properties Morphology

[Ref.: #19461]	Colony color	Brown
[Ref.: #19461]	Incubation period	10-14 days
[Ref.: #19461]	Cultivation medium used	ISP 2

[Ref.: #19461]	Colony color	Yellow
[Ref.: #19461]	Incubation period	10-14 days
[Ref.: #19461]	Cultivation medium used	ISP 3

[Ref.: #19461]	Colony color	Brown
[Ref.: #19461]	Incubation period	10-14 days
[Ref.: #19461]	Cultivation medium used	ISP 4

[Ref.: #19461]	Colony color	Brown
[Ref.: #19461]	Incubation period	10-14 days
[Ref.: #19461]	Cultivation medium used	ISP 5

[Ref.: #19461]	Colony color	Brown
[Ref.: #19461]	Incubation period	10-14 days
[Ref.: #19461]	Cultivation medium used	ISP 6

[Ref.: #19461]	Colony color	Brown
[Ref.: #19461]	Incubation period	10-14 days
[Ref.: #19461]	Cultivation medium used	ISP 7

[Ref.: #19461]	Multicellular complex forming ability	yes
[Ref.: #19461]	Multicellular complex name	Aerial Mycelium
[Ref.: #19461]	Multicellular complex color	Light gray
[Ref.: #19461]	Medium Name (multicellularity)	ISP 2

[Ref.: #19461]	Multicellular complex forming ability	yes
[Ref.: #19461]	Multicellular complex name	Aerial Mycelium
[Ref.: #19461]	Multicellular complex color	White
[Ref.: #19461]	Medium Name (multicellularity)	ISP 3

[Ref.: #19461]	Multicellular complex forming ability	yes
[Ref.: #19461]	Multicellular complex name	Aerial Mycelium
[Ref.: #19461]	Multicellular complex color	Gray
[Ref.: #19461]	Medium Name (multicellularity)	ISP 4

[Ref.: #19461]	Multicellular complex forming ability	yes
[Ref.: #19461]	Multicellular complex name	Aerial Mycelium
[Ref.: #19461]	Multicellular complex color	Gray
[Ref.: #19461]	Medium Name (multicellularity)	ISP 5

[Ref.: #19461]	Multicellular complex forming ability	yes
[Ref.: #19461]	Multicellular complex name	Aerial Mycelium
[Ref.: #19461]	Multicellular complex color	Gray
[Ref.: #19461]	Medium Name (multicellularity)	ISP 6

[Ref.: #19461]	Multicellular complex forming ability	yes
[Ref.: #19461]	Multicellular complex name	Aerial Mycelium
[Ref.: #19461]	Multicellular complex color	Gray
[Ref.: #19461]	Medium Name (multicellularity)	ISP 7

Information on culture and growth conditions Culture and growth conditions

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Culture medium

GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)

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Culture medium growth

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Culture medium link

Medium recipe at MediaDive

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Culture medium composition

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Culture medium

ISP 2

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Culture medium growth

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Culture medium composition

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Culture medium

ISP 3

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Culture medium growth

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Culture medium

ISP 4

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Culture medium growth

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Culture medium composition

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Culture medium

ISP 5

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Culture medium growth

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Culture medium

ISP 6

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Culture medium growth

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Culture medium composition

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Culture medium

ISP 7

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Culture medium composition

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Culture medium

ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84)

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Culture medium growth

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Culture medium link

Medium recipe provided by DSMZ

		Temperature
[Ref.: #9571]	growth	28 °C
[Ref.: #19461]	optimum	28 °C
[Ref.: #67770]	growth	28 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #19461]	Spore description	Formation of spore chains (retinaculiapetri), spore surface spiny
[Ref.: #19461]	Type of spore	spore
[Ref.: #19461]	Ability of spore formation	yes
[Ref.: #69480]	Ability of spore formation	yes Confidence in %93.127
[Ref.: #69481]	Ability of spore formation	yes Confidence in %100

[Ref.: #9571]	Name of produced compound	danomycin
[Ref.: #9571]	Name of produced compound	chrysomycin M+V

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #19461]		NaCl		maximum	5	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #19461]	arabinose ChEBI	+
[Ref.: #68368]	arginine ChEBI	-	hydrolysis	* from API 20E
[Ref.: #19461]	cellulose ChEBI	-
[Ref.: #68368]	citrate ChEBI	-	assimilation	* from API 20E
[Ref.: #19461]	fructose ChEBI	+
[Ref.: #68368]	gelatin ChEBI	+	hydrolysis	* from API 20E
[Ref.: #19461]	glucose ChEBI	+
[Ref.: #68368]	lysine ChEBI	-	degradation	* from API 20E
[Ref.: #19461]	mannitol ChEBI	+
[Ref.: #19461]	myo-inositol ChEBI	-
[Ref.: #68368]	ornithine ChEBI	-	degradation	* from API 20E
[Ref.: #19461]	raffinose ChEBI	-
[Ref.: #19461]	rhamnose ChEBI	+
[Ref.: #19461]	sucrose ChEBI	-
[Ref.: #68368]	tryptophan ChEBI	-	energy source	* from API 20E
[Ref.: #68368]	urea ChEBI	-	hydrolysis	* from API 20E
[Ref.: #19461]	xylose ChEBI	-
	Only first 10 entries are displayed. Click here to see all.

	Metabolite	Production
[Ref.: #67770]	danomycin	yes
[Ref.: #68368]	acetoin ChEBI	yes	* from API 20E
[Ref.: #68368]	hydrogen sulfide ChEBI	no	* from API 20E
[Ref.: #68368]	indole ChEBI	no	* from API 20E

	Physiological tests	Metabolite	Voges-Proskauer-test	Indole test
[Ref.: #68368]		acetoin ChEBI	+		* from API 20E
[Ref.: #68368]		indole ChEBI		-	* from API 20E

	Enzyme	Enzyme activity	EC number
[Ref.: #68368]	arginine dihydrolase	-	3.5.3.6	* from API 20E
[Ref.: #68368]	beta-galactosidase	+	3.2.1.23	* from API 20E
[Ref.: #68368]	gelatinase	+		* from API 20E
[Ref.: #68368]	lysine decarboxylase	-	4.1.1.18	* from API 20E
[Ref.: #68368]	ornithine decarboxylase	-	4.1.1.17	* from API 20E
[Ref.: #68368]	tryptophan deaminase	+	4.1.99.1	* from API 20E
[Ref.: #68368]	urease	-	3.5.1.5	* from API 20E

API® 20E:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	beta-GalactosidaseONPG	Arginine dihydrolaseADH (Arg)	Lysine decarboxylaseLDC (Lys)	Ornithine decarboxylaseODC	Citrate utilizationCIT	H2S productionH2S	Urease/urea hydrolysisURE	Tryptophan deaminaseTDA (Trp)	Indole productionIND	Acetoin production (Voges Proskauer test)VP	Gelatinase/gelatin hydrolysisGEL	Fermentation/oxidation of D-glucoseGLU	Fermentation/oxidation of D-mannitolMAN	Fermentation/oxidation of inositolINO	Fermentation/oxidation of sorbitolSor	Fermentation/oxidation of L-rhamnoseRHA	Fermentation/oxidation of sucroseSAC	Fermentation/oxidation of melibioseMEL	Fermentation/oxidation of amygdalinAMY	Fermentation/oxidation of L-arabinoseARA	Cytochrome oxidaseOX	Nitrite productionNO2	Reduction to N2N2	MotilityMOB	Growth on MacConkey mediumMAC	Oxidative catabolisation of D-glucoseOF-O	Fermentation of D-glucoseOF-F
[Ref.: #19461]	322	+	-	-	-	-	-	-	+	-	+	+	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #9571]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #19461]	Biosafety level	1	Risk group (German classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20218]	Streptomyces albaduncus strain JCM 4715 16S ribosomal RNA gene, partial sequence	AY999757	1448	GenBank ENA	68172 tax ID	*
[Ref.: #20218]	Streptomyces albaduncus gene for 16S ribosomal RNA, partial sequence, strain: JCM 4715	D44305	121	GenBank ENA	68172 tax ID	*
[Ref.: #20218]	Streptomyces albaduncus gene for 16S rRNA, partial sequence, strain: NBRC 13397	AB184376	1415	GenBank ENA	68172 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Streptomyces albaduncus CECT 3226	GCA_014203495	scaffold	GenBank ENA	68172 tax ID	*
[Ref.: #66792]	Streptomyces albaduncus JCM 4715	GCA_014650615	scaffold	GenBank ENA	68172 tax ID	*
[Ref.: #66792]	Streptomyces albaduncus strain CECT 3226	68172.3	wgs	PATRIC	68172 tax ID	*
[Ref.: #66792]	Streptomyces albaduncus strain JCM 4715	68172.4	wgs	PATRIC	68172 tax ID	*
[Ref.: #66792]	Streptomyces albaduncus CECT 3226	2863249894	draft	JGI IMG/M	68172 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Streptomyces albaduncus CECT 3226 NCBI: GCA_014203495.1
[Ref.: #69481]	spore-forming	spore-formingⓘ	yes	100	no

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Streptomyces albaduncus CECT 3226 NCBI: GCA_014203495.1
[Ref.: #69480]	gram-positive	gram-positiveⓘ	yes	89.287	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	97.884	no
[Ref.: #69480]	aerobic	aerobicⓘ	yes	89.903	no
[Ref.: #69480]	spore-forming	spore-formingⓘ	yes	93.127	yes
[Ref.: #69480]	thermophilic	thermophileⓘ	no	95	yes
[Ref.: #69480]	flagellated	motile2+ⓘ	no	88	no

Availability in culture collections External links

[Ref.: #9571]

Culture collection no.

DSM 40478, ATCC 14698, CBS 698.72, IFO 13397, ISP 5478, JCM 4715, KCC S-0715, NBRC 13397, RIA 1358, CECT 3226, CGMCC 4.1580, IMSNU 20132, KCTC 1741, MTCC 924, NRRL B-3605, VKM Ac-1753

[Ref.: #83997]

SI-ID 36154

References

#9571

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 40478

#19461

Wink, J.: Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig .

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68368

Automatically annotated from API 20E .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#83997

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID36154.1 )

* These data were automatically processed and therefore are not curated

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Streptomyces albaduncus CECT 3226

Streptomyces albaduncus CECT 3226

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