Strain identifier

BacDive ID: 14888

Type strain: Yes

Species: Streptomyces albaduncus

Strain Designation: 13246

Strain history: KCC S-0715 <-- IFO 13397 <-- SAJ <-- ISP 5478 <-- ATCC 14698 <-- Bristol Labs. <-- Bristol-Banyu Res. Inst.; 13246.

NCBI tax ID(s): 68172 (species)

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General

@ref: 9571

BacDive-ID: 14888

DSM-Number: 40478

keywords: genome sequence, 16S sequence, Bacteria, spore-forming, mesophilic, Gram-positive, antibiotic compound production

description: Streptomyces albaduncus 13246 is a spore-forming, mesophilic, Gram-positive bacterium that builds an aerial mycelium and produces antibiotic compounds.

NCBI tax id

  • NCBI tax id: 68172
  • Matching level: species

strain history

@refhistory
9571<- E.B. Shirling, ISP <- ATCC <- Bristol Labs. <- Bristol-Banyu Res. Inst., 13246
67770KCC S-0715 <-- IFO 13397 <-- SAJ <-- ISP 5478 <-- ATCC 14698 <-- Bristol Labs. <-- Bristol-Banyu Res. Inst.; 13246.

doi: 10.13145/bacdive14888.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Kitasatosporales
  • family: Streptomycetaceae
  • genus: Streptomyces
  • species: Streptomyces albaduncus
  • full scientific name: Streptomyces albaduncus Tsukiura et al. 1964 (Approved Lists 1980)

@ref: 9571

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Streptomycetaceae

genus: Streptomyces

species: Streptomyces albaduncus

full scientific name: Streptomyces albaduncus Tsukiura et al. 1964

strain designation: 13246

type strain: yes

Morphology

cell morphology

  • @ref: 69480
  • gram stain: positive
  • confidence: 100

colony morphology

@refcolony colorincubation periodmedium used
19461Brown10-14 daysISP 2
19461Yellow10-14 daysISP 3
19461Brown10-14 daysISP 4
19461Brown10-14 daysISP 5
19461Brown10-14 daysISP 6
19461Brown10-14 daysISP 7

multicellular morphology

@refforms multicellular complexcomplex namecomplex colormedium name
19461yesAerial MyceliumLight grayISP 2
19461yesAerial MyceliumWhiteISP 3
19461yesAerial MyceliumGrayISP 4
19461yesAerial MyceliumGrayISP 5
19461yesAerial MyceliumGrayISP 6
19461yesAerial MyceliumGrayISP 7

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
9571GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)yeshttps://mediadive.dsmz.de/medium/65Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water
19461ISP 2yesName: ISP 2 / Yeast Malt Agar (5265); 5265 Composition Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l Agar 15.0 g/l Preparation: Sterilisation: 20 minutes at 121°C pH before sterilisation: 7.0 Usage: Maintenance and Taxonomy Organisms: All Actinomycetes
19461ISP 3yesName: ISP 3; 5315 Composition Dog oat flakes 20.0 g/l Trace element solution (5314) 2.5 ml/l Agar 18.0 g/l Preparation: Oat flakes are cooked for 20 minutes, trace element solution and agar are added (in the case of non rolled oat flakes the suspension has to bee filtrated). Sterilisation: 20 minutes at 121°C pH before sterilisation: 7.8 Usage: Maintenance and taxonomy (e.g. SEM As liquid medium for metabolite production) Organisms: All Actinomycetes Trace element solution 5314 Name: Trace element solution 5314; 5314 Composition CaCl2 x H2O 3.0 g/l Fe-III-citrate 1.0 g/l MnSO4 0.2 g/l ZnCl2 0.1 g/l CuSO4 x 5 H2O 0.025 g/l Sodium tetra borate 0.2 g/l CoCl2 x 6 H2O 0.004 g/l Sodium molybdate 0.01 g/l Preparation: Use double destillated water. Sterilisation: 20 minutes at 121°C pH before sterilisation: Usage: Trace element solution for different media Organisms:
19461ISP 4yesName: ISP 4; DSM 547 Solution I: Difco soluble starch, 10.0 g. Make a paste of the starch with a small amount of cold distilled water and bring to a volume of 500 ml. Solution II: CaCO3 2.0 g K2HPO4 (anhydrous) 1.0 g MgSO4 x 7 H2O 1.0 g NaCl 1.0 g (NH4)2SO4 2.0 g Distilled water 500.0 ml Trace salt solution (see below) 1.0 ml The pH should be between 7.0 and 7.4. Do not adjust if it is within this range. Mix solutions I and II together. Add 20.0 g agar. Liquify agar by steaming at 100°C for 10 to 20 min. Trace element solution: FeSO4 x 7 H2O 0.1 g MnCl2 x 4 H2O 0.1 g ZnSO4 x 7 H2O 0.1 g Distilled water 100.0 ml
19461ISP 5yesName: ISP 5 (5323) Composition L-Asparagine 1.0 g/l Glycerol 10.0 g/l K2HPO4 1.0 g/l Salt solution (see preparation) 1.0 ml/l Agar 20.0 g/l Preparation: Salt solution 1.0 g FeSO4 x 7 H2O 1.0 g MnCl2 x 4 H2O 1.0 g ZNSO4 x 7 H2O in 100 ml water Sterilisation: 20 minutes at 121°C pH before sterilisation: 7.2 Usage: Maintenance and taxonomy Organisms: All Actinomycetes
19461ISP 6yesName: ISP 6 (5318) Composition Peptone 15.0 g/l Proteose peptose 5.0 g/l Ferric ammonium citrate 0.5 g/l Sodium glycerophosphate 1.0 g/l Sodium thiosulfate 0.08 g/l Yeast extract 1.0 g/l Agar 15.0 g/l Sterilisation: 20 minutes at 121°C pH before sterilisation: Usage: Production of melanoid pigments Organisms: All Actinomycetes
19461ISP 7yesName: ISP 7 (5322) Composition Glycerol 15.0 g/l L-Tyrosine 0.5 g/l L-Asparagine 1.0 g/l K2HPO4 0.5 g/l NaCl 0.5 g/l FeSO4 x 7 H2O 0.01 g/l Trace element solution 5343 1.0 ml/l Agar 20.0 Sterilisation: 20 minutes at 121°C pH before sterilisation: 7.3 Usage: Production of melanoid pigments Organisms: All Actinomycetes
9571ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84)yeshttps://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium84.pdf

culture temp

@refgrowthtypetemperaturerange
19461positiveoptimum28mesophilic
9571positivegrowth28mesophilic
67770positivegrowth28mesophilic

Physiology and metabolism

spore formation

@refspore descriptiontype of sporespore formationconfidence
19461Formation of spore chains (retinaculiapetri), spore surface spinysporeyes
69481yes100
69480yes100

compound production

@refcompound
9571danomycin
9571chrysomycin M+V

halophily

  • @ref: 19461
  • salt: NaCl
  • growth: positive
  • tested relation: maximum
  • concentration: 5 %

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
1946162968cellulose-
1946116634raffinose-
1946126546rhamnose+
1946128757fructose+
1946129864mannitol+
1946117268myo-inositol-
1946118222xylose-
1946117992sucrose-
1946122599arabinose+
1946117234glucose+
683685291gelatin+hydrolysis
6836827897tryptophan-energy source
6836816199urea-hydrolysis
6836816947citrate-assimilation
6836818257ornithine-degradation
6836825094lysine-degradation
6836829016arginine-hydrolysis

metabolite production

@refmetaboliteproductionChebi-ID
67770danomycinyes
68368acetoinyes15688
68368indoleno35581
68368hydrogen sulfideno16136

metabolite tests

@refChebi-IDmetabolitevoges-proskauer-testindole test
6836815688acetoin+
6836835581indole-

enzymes

@refvalueactivityec
68368gelatinase+
68368tryptophan deaminase+4.1.99.1
68368urease-3.5.1.5
68368ornithine decarboxylase-4.1.1.17
68368lysine decarboxylase-4.1.1.18
68368arginine dihydrolase-3.5.3.6
68368beta-galactosidase+3.2.1.23

API 20E

@refONPGADH ArgLDC LysODCCITH2SURETDA TrpINDVPGEL
19461+------+-++

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
95711Risk group (German classification)
194611Risk group (German classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Streptomyces albaduncus strain JCM 4715 16S ribosomal RNA gene, partial sequenceAY9997571448ena68172
20218Streptomyces albaduncus gene for 16S ribosomal RNA, partial sequence, strain: JCM 4715D44305121ena68172
20218Streptomyces albaduncus gene for 16S rRNA, partial sequence, strain: NBRC 13397AB1843761415ena68172

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Streptomyces albaduncus CECT 3226GCA_014203495scaffoldncbi68172
66792Streptomyces albaduncus JCM 4715GCA_014650615scaffoldncbi68172
66792Streptomyces albaduncus strain CECT 322668172.3wgspatric68172
66792Streptomyces albaduncus strain JCM 471568172.4wgspatric68172
66792Streptomyces albaduncus CECT 32262863249894draftimg68172

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingyes100no
flagellatedno97.953no
gram-positiveyes89.57no
anaerobicno99.09no
aerobicyes94.614no
halophileno93.819no
spore-formingyes95.974no
glucose-utilyes89.464no
thermophileno97.946no
motileno94.04no
glucose-fermentno89.274no

External links

@ref: 9571

culture collection no.: DSM 40478, ATCC 14698, CBS 698.72, IFO 13397, ISP 5478, JCM 4715, KCC S-0715, NBRC 13397, RIA 1358, CECT 3226, CGMCC 4.1580, IMSNU 20132, KCTC 1741, MTCC 924, NRRL B-3605, VKM Ac-1753

straininfo link

  • @ref: 83997
  • straininfo: 36154

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
9571Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 40478)https://www.dsmz.de/collection/catalogue/details/culture/DSM-40478
19461Wink, J.http://www.dsmz.de/microorganisms/wink_pdf/DSM40478.pdfCompendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
68368Automatically annotated from API 20E
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch10.21203/rs.3.rs-2527258/v1Predictions based on the model GenomeNet Sporulation v. 1
83997Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID36154.1StrainInfo: A central database for resolving microbial strain identifiers