Name: Streptacidiphilus carbonis JL415
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 14872

Type strain:

Species: Streptacidiphilus carbonis

Strain Designation: JL415

Culture col. no.: DSM 41754, KCTC 9912, JCM 12364, BCRC 16806, CGMCC 4.1810, NBRC 100919, NCIMB 13798

Strain history: <- S.B.Kim, KRIBB

NCBI tax ID(s): 105422 (species)

SI-ID 60983

NCIMB 13798, DSM 41754, KCTC 9912, NBRC 100919, JCM 12364, BCRC 16806, CCRC 16806, CGMCC 4.1810

Special Collections

Section

Streptacidiphilus carbonis JL415 is an aerobe, spore-forming, Gram-positive bacterium that builds an aerial mycelium and was isolated from coal mine waste.

Gram-positive
spore-forming
aerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Kitasatosporales*
	Family	*Streptomycetaceae*
	Genus	*Streptacidiphilus*
	Species	**Streptacidiphilus carbonis**
	Full Scientific Name (LPSN)	Streptacidiphilus carbonis Kim et al. 2003

Information on morphological and physiological properties Morphology

[Ref.: #67771]	Gram stain	positive
[Ref.: #69480]	Gram stain	positive Confidence in %90.055

[Ref.: #18715]	Colony color	Sand yellow (1002)
[Ref.: #18715]	Incubation period	10-14 days
[Ref.: #18715]	Cultivation medium used	ISP 2

[Ref.: #18715]	Colony color	Colorless
[Ref.: #18715]	Incubation period	10-14 days
[Ref.: #18715]	Cultivation medium used	ISP 3

[Ref.: #18715]	Colony color	Brown beige (1011)
[Ref.: #18715]	Incubation period	10-14 days
[Ref.: #18715]	Cultivation medium used	ISP 4

[Ref.: #18715]	Colony color	Beige (1001)
[Ref.: #18715]	Incubation period	10-14 days
[Ref.: #18715]	Cultivation medium used	ISP 5

[Ref.: #18715]	Colony color	Beige (1001)
[Ref.: #18715]	Incubation period	10-14 days
[Ref.: #18715]	Cultivation medium used	ISP 6

[Ref.: #18715]	Colony color	Brown beige (1011)
[Ref.: #18715]	Incubation period	10-14 days
[Ref.: #18715]	Cultivation medium used	ISP 7

[Ref.: #18715]	Multicellular complex forming ability	yes
[Ref.: #18715]	Multicellular complex name	Aerial Mycelium
[Ref.: #18715]	Multicellular complex color	Cream
[Ref.: #18715]	Medium Name (multicellularity)	ISP 2

[Ref.: #18715]	Multicellular complex forming ability	no
[Ref.: #18715]	Medium Name (multicellularity)	ISP 3

[Ref.: #18715]	Multicellular complex forming ability	yes
[Ref.: #18715]	Multicellular complex name	Aerial Mycelium
[Ref.: #18715]	Multicellular complex color	Cream
[Ref.: #18715]	Medium Name (multicellularity)	ISP 4

[Ref.: #18715]	Multicellular complex forming ability	no
[Ref.: #18715]	Medium Name (multicellularity)	ISP 5

[Ref.: #18715]	Multicellular complex forming ability	no
[Ref.: #18715]	Medium Name (multicellularity)	ISP 6

[Ref.: #18715]	Multicellular complex forming ability	no
[Ref.: #18715]	Medium Name (multicellularity)	ISP 7

Information on culture and growth conditions Culture and growth conditions

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Culture medium

BENNETT'S AGAR (DSMZ Medium 548)

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Culture medium growth

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Medium recipe at MediaDive

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Culture medium

ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84)

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Medium recipe at MediaDive

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Culture medium

GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)

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Medium recipe at MediaDive

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Culture medium composition

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Culture medium

ISP 2

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Culture medium

ISP 3

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Culture medium

ISP 4

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Culture medium

ISP 5

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Culture medium

ISP 6

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Culture medium

ISP 7

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Culture medium growth

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Culture medium composition

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		Temperature
[Ref.: #10547]	growth	28 °C
[Ref.: #67770]	growth	28 °C
[Ref.: #67771]	growth	25 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #67771]

Oxygen tolerance

aerobe

[Ref.: #69481]

Ability of spore formation

yes Confidence in %98

[Ref.: #67770]

Observation

quinones: MK-9(H₆), MK-9(H₈)

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #68382]	alkaline phosphatase	+	3.1.3.1	* from API zym
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	+	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	+	3.2.1.20	* from API zym
[Ref.: #68382]	alpha-mannosidase	+	3.2.1.24	* from API zym
[Ref.: #68382]	beta-galactosidase	+	3.2.1.23	* from API zym
[Ref.: #68382]	beta-glucosidase	+	3.2.1.21	* from API zym
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym
[Ref.: #68382]	cystine arylamidase	+	3.4.11.3	* from API zym
[Ref.: #68382]	esterase (C 4)	+		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	+		* from API zym
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	+		* from API zym
[Ref.: #68382]	trypsin	-	3.4.21.4	* from API zym
[Ref.: #68382]	valine arylamidase	+		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #18715]	292	not determinedn.d.	+	+	+	-	+	+	+	-	-	+	+	+	+	-	+	+	-	+	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #10547]	Sample type/isolated from	coal mine waste
[Ref.: #10547]	Geographic location (country and/or sea, region)	Northumberland, east Cramlington
[Ref.: #10547]	Country	United Kingdom
[Ref.: #10547]	Country ISO 3 Code	GBR
[Ref.: #10547]	Continent	Europe

[Ref.: #67770]	Sample type/isolated from	Reclaimed acid coal mine waste at East Cramlington
[Ref.: #67770]	Geographic location (country and/or sea, region)	Northumberland
[Ref.: #67770]	Country	United Kingdom
[Ref.: #67770]	Country ISO 3 Code	GBR
[Ref.: #67770]	Continent	Europe

[Ref.: #67771]	Sample type/isolated from	From acid coal mine waste
[Ref.: #67771]	Country	United Kingdom
[Ref.: #67771]	Country ISO 3 Code	GBR
[Ref.: #67771]	Continent	Europe
* marker position based on {}

Isolation sources categories

#Engineered	#Other	#Mine
#Engineered	#Waste	#Solid waste
#Environmental	#Terrestrial	#Geologic

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #18715]	Biosafety level	1	German classification
[Ref.: #10547]	Biosafety level	1	Risk group (German classification) According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #10547]	Soil actinomycete DSM 41754 16S ribosomal RNA gene, complete sequence	AF074412	1511	GenBank ENA	105422 tax ID
[Ref.: #124043]	Streptacidiphilus carbonis gene for 16S rRNA, partial sequence, strain: NBRC 100919.	AB249972	1409	GenBank ENA	105422 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Streptacidiphilus carbonis NBRC 100919	GCA_000787775	scaffold	GenBank ENA	105422 tax ID
[Ref.: #66792]	Streptacidiphilus carbonis NBRC 100919	105422.3	wgs	PATRIC	105422 tax ID	*
[Ref.: #66792]	Streptacidiphilus carbonis NBRC 100919	2706794555	draft	JGI IMG/M	105422 tax ID	*

[Ref.: #67770]

GC-content

71.5 mol%

genome sequence analysis

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Streptacidiphilus carbonis NBRC 100919 NCBI: GCA_000787775.1
[Ref.: #69481]	spore-forming	spore-formingⓘ	yes	98	no

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Streptacidiphilus carbonis NBRC 100919 PATRIC: 105422.3
[Ref.: #69480]	gram-positive	gram-positiveⓘ	yes	90.055	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	95.165	no
[Ref.: #69480]	spore-forming	spore-formingⓘ	yes	88.169	no
[Ref.: #69480]	aerobic	aerobicⓘ	yes	85.148	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	96.741	yes
[Ref.: #69480]	flagellated	motile2+ⓘ	no	88.5	no

Availability in culture collections External links

[Ref.: #10547]

Culture collection no.

DSM 41754, KCTC 9912, JCM 12364, BCRC 16806, CGMCC 4.1810, NBRC 100919, NCIMB 13798

[Ref.: #83983]

SI-ID 60983

Literature:

Topic	Title	Authors	Journal	DOI	Year
Metabolism	Genome Mining of the Genus Streptacidiphilus for Biosynthetic and Biodegradation Potential.	Malik A, Kim YR, Kim SB	Genes (Basel)	10.3390/genes11101166	2020	*

References

#10547

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 41754

#18715

Wink, J.: Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig .

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#67771 Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;

#68382

Automatically annotated from API zym .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#83983

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID60983.1 )

#124043

Dr. Isabel Schober, Dr. Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .

* These data were automatically processed and therefore are not curated

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Streptacidiphilus carbonis NBRC 100919

Streptacidiphilus carbonis NBRC 100919

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