Name: Streptacidiphilus albus JL83
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 14871

Type strain:

Species: Streptacidiphilus albus

Strain Designation: JL83

Culture col. no.: DSM 41753, KCTC 9910, JCM 12363, BCRC 16805, CGMCC 4.1812, NBRC 100918

Strain history: <- S.B. Kim, KRIBB

NCBI tax ID(s): 105425 (species)

SI-ID 87954

DSM 41753, KCTC 9910, NBRC 100918, JCM 12363, BCRC 16805, CCRC 16805, CGMCC 4.1812

Special Collections

Section

When using BacDive for research please cite our paper

Streptacidiphilus albus JL83 is an aerobe, mesophilic, Gram-positive bacterium that was isolated from soil.

Gram-positive
aerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	09-12-2024 (DD-MM-YYYY)
	Domain	*Bacteria*
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Kitasatosporales*
	Family	*Streptomycetaceae*
	Genus	*Streptacidiphilus*
	Species	**Streptacidiphilus albus**
	Full Scientific Name (LPSN)	Streptacidiphilus albus Kim et al. 2003

Information on morphological and physiological properties Morphology

[Ref.: #67771]	Gram stain	positive
[Ref.: #125439]	Gram stain	positive Confidence in %99.8

[Ref.: #125439]	Motility	no Confidence in %91.2

[Ref.: #10546]

Incubation period

>14 days

Information on culture and growth conditions Culture and growth conditions

[Ref.: #10546]

Culture medium

GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)

[Ref.: #10546]

Culture medium growth

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Culture medium link

Medium recipe at MediaDive

[Ref.: #10546]

Culture medium composition

expand / minimize

[Ref.: #10546]

Culture medium

GPHF-MEDIUM (DSMZ Medium 553)

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Culture medium growth

[Ref.: #10546]

Culture medium link

Medium recipe provided by DSMZ

		Temperature
[Ref.: #10546]	growth	28 °C
[Ref.: #67770]	growth	28 °C
[Ref.: #67771]	growth	25 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #67771]	Oxygen tolerance	aerobe
[Ref.: #125439]	Oxygen tolerance	obligate aerobe Confidence in %96.9

[Ref.: #125439]

Ability of spore formation

yes Confidence in %94.3

[Ref.: #67770]

Observation

quinones: MK-9(H₆), MK-9(H₈)

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #10546]	Sample type/isolated from	soil
[Ref.: #10546]	Geographic location (country and/or sea, region)	County Durham, Hamsterly Forest
[Ref.: #10546]	Country	United Kingdom
[Ref.: #10546]	Country ISO 3 Code	GBR
[Ref.: #10546]	Continent	Europe

[Ref.: #67770]	Sample type/isolated from	Litter layers in a spruce forest
[Ref.: #67770]	Geographic location (country and/or sea, region)	Hamsterley Forest, County Durham
[Ref.: #67770]	Country	United Kingdom
[Ref.: #67770]	Country ISO 3 Code	GBR
[Ref.: #67770]	Continent	Europe

[Ref.: #67771]	Sample type/isolated from	From litter layers of a spruce forest soil
[Ref.: #67771]	Country	United Kingdom
[Ref.: #67771]	Country ISO 3 Code	GBR
[Ref.: #67771]	Continent	Europe
* marker position based on {}

Isolation sources categories

#Environmental

#Terrestrial

#Soil

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AF074415 (>99% sequence identity) for Streptacidiphilus albus from Microbeatlas

Aquatic Samples	63
Soil Samples	2383
Animal Samples	186
Plant Samples	38
Total Samples	2670

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #10546]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #10546]	Soil actinomycete DSM 41753 16S ribosomal RNA gene, complete sequence	AF074415	1510	GenBank ENA	105425 tax ID

Genome sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Streptacidiphilus albus NBRC 100918	GCA_000787755	scaffold	GenBank ENA	105425 tax ID
[Ref.: #67770]	Streptacidiphilus albus JL83	GCA_000744705	contig	GenBank ENA	1449352 tax ID
[Ref.: #66792]	Streptacidiphilus albus JL83	1449352.3	wgs	PATRIC	1449352 tax ID	*
[Ref.: #66792]	Streptacidiphilus albus NBRC 100918	105425.3	wgs	PATRIC	105425 tax ID	*
[Ref.: #66792]	Streptacidiphilus albus NBRC 100918	2706794554	draft	JGI IMG/M	105425 tax ID	*
[Ref.: #66792]	Streptacidiphilus albus JL83	2574179785	draft	JGI IMG/M	1449352 tax ID	*

[Ref.: #67770]

GC-content

71.8 mol%

genome sequence analysis

Data predicted using genome information as a basis Genome-based predictions

	Model	Trait	Prediction	Confidence in %	In training data
	Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Streptacidiphilus albus JL83 PATRIC: 1449352.3
[Ref.: #125438]	gram-positive	gram-positiveⓘ	yes	89.674	no
[Ref.: #125438]	anaerobic	anaerobicⓘ	no	94.91	yes
[Ref.: #125438]	spore-forming	spore-formingⓘ	yes	84.613	no
[Ref.: #125438]	aerobic	aerobicⓘ	yes	88.202	yes
[Ref.: #125438]	thermophile	thermophilicⓘ	no	95	yes
[Ref.: #125438]	motile2+	flagellatedⓘ	no	89	no

	Model	Trait	Prediction	Confidence in %
	Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Streptacidiphilus albus NBRC 100918 NCBI: GCA_000787755
[Ref.: #125439]	BacteriaNet	oxygen_toleranceⓘ	obligate aerobe	96.9
[Ref.: #125439]	BacteriaNet	gram_stainⓘ	positive	99.8
[Ref.: #125439]	BacteriaNet	motilityⓘ	no	91.2
[Ref.: #125439]	BacteriaNet	spore_formationⓘ	yes	94.3

Availability in culture collections External links

[Ref.: #10546]

Culture collection no.

DSM 41753, KCTC 9910, JCM 12363, BCRC 16805, CGMCC 4.1812, NBRC 100918

[Ref.: #83982]

SI-ID 87954

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Streptacidiphilus durhamensis sp. nov., isolated from a spruce forest soil.	Golinska P, Ahmed L, Wang D, Goodfellow M	Antonie Van Leeuwenhoek	10.1007/s10482-013-9938-9	2013	*

References

#10546

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 41753

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#67771 Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#83982

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID87954.1 )

#125438

Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )

#125439

Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .

* These data were automatically processed and therefore are not curated

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Streptacidiphilus albus JL83

Streptacidiphilus albus NBRC 100918

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