Name: Streptacidiphilus neutrinimicus JL206
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 14873

Type strain:

Species: Streptacidiphilus neutrinimicus

Strain Designation: JL206

Culture col. no.: DSM 41755, KCTC 9911, JCM 12365, BCRC 16807, CGMCC 4.1811, NBRC 100921, NCIMB 13797

Strain history: <- S.B.Kim, KRIBB

NCBI tax ID(s): 105420 (species)

SI-ID 60982

NCIMB 13797, DSM 41755, KCTC 9911, NBRC 100921, JCM 12365, BCRC 16807, CCRC 16807, CGMCC 4.1811

Special Collections

Section

Streptacidiphilus neutrinimicus JL206 is an aerobe, spore-forming, Gram-positive bacterium that was isolated from soil.

Gram-positive
spore-forming
aerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Kitasatosporales*
	Family	*Streptomycetaceae*
	Genus	*Streptacidiphilus*
	Species	**Streptacidiphilus neutrinimicus**
	Full Scientific Name (LPSN)	Streptacidiphilus neutrinimicus Kim et al. 2003

Information on morphological and physiological properties Morphology

[Ref.: #67771]	Gram stain	positive
[Ref.: #69480]	Gram stain	positive Confidence in %92.756

Information on culture and growth conditions Culture and growth conditions

[Ref.: #10548]

Culture medium

BENNETT'S AGAR (DSMZ Medium 548)

[Ref.: #10548]

Culture medium growth

[Ref.: #10548]

Culture medium link

Medium recipe at MediaDive

[Ref.: #10548]

Culture medium composition

expand / minimize

[Ref.: #10548]

Culture medium

ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84)

[Ref.: #10548]

Culture medium growth

[Ref.: #10548]

Culture medium link

Medium recipe at MediaDive

[Ref.: #10548]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #10548]	growth	28 °C
[Ref.: #67770]	growth	28 °C
[Ref.: #67771]	growth	25 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #67771]

Oxygen tolerance

aerobe

[Ref.: #69481]

Ability of spore formation

yes Confidence in %100

[Ref.: #67770]

Observation

quinones: MK-9(H₆), MK-9(H₈)

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #10548]	Sample type/isolated from	soil
[Ref.: #10548]	Geographic location (country and/or sea, region)	County Duhram, Hamsterly Forest
[Ref.: #10548]	Country	United Kingdom
[Ref.: #10548]	Country ISO 3 Code	GBR
[Ref.: #10548]	Continent	Europe

[Ref.: #67770]	Sample type/isolated from	Litter layers in a spruce forest
[Ref.: #67770]	Geographic location (country and/or sea, region)	Hamsterley Forest, County Durham
[Ref.: #67770]	Country	United Kingdom
[Ref.: #67770]	Country ISO 3 Code	GBR
[Ref.: #67770]	Continent	Europe

[Ref.: #67771]	Sample type/isolated from	From soil
[Ref.: #67771]	Country	United Kingdom
[Ref.: #67771]	Country ISO 3 Code	GBR
[Ref.: #67771]	Continent	Europe
* marker position based on {}

Isolation sources categories

#Environmental

#Terrestrial

#Soil

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AB249949 (>99% sequence identity) for Streptacidiphilus from Microbeatlas

Aquatic Samples	86
Soil Samples	623
Animal Samples	112
Plant Samples	31
Total Samples	852

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #10548]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67771]	Streptacidiphilus neutrinimicus gene for 16S rRNA, partial sequence, strain: NBRC 100921	AB249949	1444	GenBank ENA	105420 tax ID
[Ref.: #10548]	Soil actinomycete DSM 41755 16S ribosomal RNA gene, complete sequence	AF074410	1511	GenBank ENA	105420 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Streptacidiphilus neutrinimicus NBRC 100921	GCA_000787815	scaffold	GenBank ENA	105420 tax ID
[Ref.: #66792]	Streptacidiphilus neutrinimicus NBRC 100921	105420.3	wgs	PATRIC	105420 tax ID	*
[Ref.: #66792]	Streptacidiphilus neutrinimicus NBRC 100921	2671180946	draft	JGI IMG/M	105420 tax ID	*

[Ref.: #67770]

GC-content

72.2 mol%

genome sequence analysis

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Streptacidiphilus neutrinimicus NBRC 100921 NCBI: GCA_000787815.1
[Ref.: #69481]	spore-forming	spore-formingⓘ	yes	100	no

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Streptacidiphilus neutrinimicus NBRC 100921 PATRIC: 105420.3
[Ref.: #69480]	gram-positive	gram-positiveⓘ	yes	92.756	yes
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	94.345	yes
[Ref.: #69480]	spore-forming	spore-formingⓘ	yes	87.719	no
[Ref.: #69480]	aerobic	aerobicⓘ	yes	89.133	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	96	yes
[Ref.: #69480]	flagellated	motile2+ⓘ	no	89.5	no

Availability in culture collections External links

[Ref.: #10548]

Culture collection no.

DSM 41755, KCTC 9911, JCM 12365, BCRC 16807, CGMCC 4.1811, NBRC 100921, NCIMB 13797

[Ref.: #83984]

SI-ID 60982

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Streptacidiphilus toruniensis sp. nov., isolated from a pine forest soil.	Golinska P, Dahm H, Goodfellow M	Antonie Van Leeuwenhoek	10.1007/s10482-016-0759-5	2016	*
Phylogeny	Streptacidiphilus hamsterleyensis sp. nov., isolated from a spruce forest soil.	Golinska P, Kim BY, Dahm H, Goodfellow M	Antonie Van Leeuwenhoek	10.1007/s10482-013-0015-1	2013	*

References

#10548

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 41755

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#67771 Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#83984

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID60982.1 )

* These data were automatically processed and therefore are not curated

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Streptacidiphilus neutrinimicus NBRC 100921

Streptacidiphilus neutrinimicus NBRC 100921

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