Streptococcus oralis (DSM 20395, 43364, JCM 5704)

Name: Streptococcus oralis (DSM 20395, 43364, JCM 5704)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 14739

Type strain

Strain Designation 43364

Culture col. no. DSM 20395 43364 JCM 5704

NCBI tax ID(s) 1303

Special Collections DSMZ JCM

History DSMZ <- Kiel, 43364 (Streptococcus viridans biotype I) JCM <-- DSM 20395 <-- Kiel 43364 ("Streptococcus viridans").

Links

Streptococcus oralis 43364 is a bacterium that was isolated from human plaque.

genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 49628

DSM 20395,JCM 5704

@ref 20215

Last LPSN update 2026-05-29 08:28:21

Domain Bacteria

Phylum Bacillota

Class Bacilli

Order Lactobacillales

Family Streptococcaceae

Genus Streptococcus

Species Streptococcus oralis

Full scientific name Streptococcus oralis Bridge and Sneath 1982

BacDive ID	Other strains from **Streptococcus oralis** (60)	Type strain
14737	S. oralis 25826, DSM 20066
136742	S. oralis SK2, CIP 103216, ATCC 10557, NCDO 2061, NCTC ...
136879	S. oralis OR4, CIP 104985
137291	S. oralis OR8, CIP 105159
138179	S. oralis OR7, CIP 105158
141871	S. oralis CCUG 7976, NCTC 10232
143278	S. oralis CCUG 18209
143846	S. oralis CCUG 21513
144224	S. oralis CCUG 23715
144360	S. oralis CCUG 24740 A
144544	S. oralis CCUG 25611, LMG 14553
145108	S. oralis CCUG 27671
145109	S. oralis CCUG 27673
145110	S. oralis CCUG 27674
145111	S. oralis CCUG 27676
145112	S. oralis CCUG 27679
145113	S. oralis CCUG 27680, LMG 14534
145114	S. oralis CCUG 27681, NPP 1, LMG 14535
145115	S. oralis CCUG 27682
146544	S. oralis CCUG 31405
146801	S. oralis CCUG 32136
147164	S. oralis CCUG 32975
147456	S. oralis CCUG 33607
147495	S. oralis CCUG 33699
147896	S. oralis CCUG 34450
148539	S. oralis CCUG 35614
148637	S. oralis CCUG 35753
148638	S. oralis CCUG 35754
148712	S. oralis CCUG 35840
148733	S. oralis CCUG 35873
150585	S. oralis CCUG 41672 A
151088	S. oralis CCUG 43242
151857	S. oralis CCUG 45058
152000	S. oralis CCUG 45494 B
152644	S. oralis CCUG 47273
152841	S. oralis CCUG 47763
153773	S. oralis CCUG 50937
153774	S. oralis CCUG 50938
153839	S. oralis CCUG 51333
154025	S. oralis CCUG 52042
154097	S. oralis CCUG 52354
154706	S. oralis CCUG 54898
154753	S. oralis CCUG 55088
154754	S. oralis CCUG 55089
154755	S. oralis CCUG 55090
154756	S. oralis CCUG 55091
154757	S. oralis CCUG 55092
154811	S. oralis CCUG 55311
154886	S. oralis CCUG 55540
155062	S. oralis CCUG 56349
155086	S. oralis CCUG 56428
155105	S. oralis CCUG 56479
155248	S. oralis CCUG 57066
155310	S. oralis CCUG 57285
155391	S. oralis CCUG 57592
155728	S. oralis CCUG 59154
156540	S. oralis CCUG 62639
156549	S. oralis CCUG 62648
156550	S. oralis CCUG 62649
156551	S. oralis CCUG 62650

Morphology

Cell morphology

@ref	Motility	Confidence
125438		90

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
8762	TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)		Medium recipe at MediaDive	Name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Yeast extract 3.0 g/l Distilled water
8762	COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)		Medium recipe at MediaDive	Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base

Culture temp

@ref	Growth	Type	Temperature (°C)
8762	positive	growth	37
67770	positive	growth	37

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125439	facultative anaerobe	91.069

Spore formation

@ref	Spore formation	Confidence
125439		91.162

Murein

@ref	Murein short key	Type
8762	A11	A1alpha L-Lys-direct

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
68381	40585 ChEBI	alpha-cyclodextrin	-	builds acid from	from API rID32STR
68381	29016 ChEBI	arginine	-	hydrolysis	from API rID32STR
68381	18333 ChEBI	D-arabitol	-	builds acid from	from API rID32STR
68381	16899 ChEBI	D-mannitol	-	builds acid from	from API rID32STR
68381	28087 ChEBI	glycogen	-	builds acid from	from API rID32STR
68381	606565 ChEBI	hippurate	-	hydrolysis	from API rID32STR
68381	30849 ChEBI	L-arabinose	-	builds acid from	from API rID32STR
68381	17716 ChEBI	lactose	+	builds acid from	from API rID32STR
68381	17306 ChEBI	maltose	+	builds acid from	from API rID32STR
68381	6731 ChEBI	melezitose	-	builds acid from	from API rID32STR
68381	28053 ChEBI	melibiose	-	builds acid from	from API rID32STR
68381	320055 ChEBI	methyl beta-D-glucopyranoside	-	builds acid from	from API rID32STR
68381	27941 ChEBI	pullulan	+	builds acid from	from API rID32STR
68381	30911 ChEBI	sorbitol	-	builds acid from	from API rID32STR
68381	17992 ChEBI	sucrose	+	builds acid from	from API rID32STR
68381	27082 ChEBI	trehalose	+	builds acid from	from API rID32STR
68381	16199 ChEBI	urea	-	hydrolysis	from API rID32STR

Metabolite production

@ref	Chebi-ID	Metabolite	Production
68381	15688 ChEBI	acetoin		from API rID32STR

Metabolite tests

@ref	Chebi-ID	Metabolite	Voges-proskauer-test
68381	15688 ChEBI	acetoin	-	from API rID32STR

Enzymes

@ref	Value	Activity	Ec
68381	alkaline phosphatase	+	3.1.3.1	from API rID32STR
68381	arginine dihydrolase	-	3.5.3.6	from API rID32STR
68381	beta-glucosidase	-	3.2.1.21	from API rID32STR
68381	beta-glucuronidase	-	3.2.1.31	from API rID32STR
68381	beta-mannosidase	-	3.2.1.25	from API rID32STR
68381	pyrrolidonyl arylamidase	-	3.4.19.3	from API rID32STR
68381	urease	-	3.5.1.5	from API rID32STR

API rID32STR

@ref	ADH (Arg)	beta GLU	beta GAR	beta GUR	alpha GAL	PAL	RIB	MAN	SOR	LAC	TRE	RAF	SAC	LARA	DARL	Acid from alpha-cyclodextrinCDEX	Acetoin production (Voges Proskauer test)VP	Alanyl-Phenylalanyl-Proline arylamidaseAPPA	beta GAL	Pyrrolidonyl arylamidasePyrA	N-Acetyl-glucosaminidasebeta NAG	Glycyl-tryptophan arylamidaseGTA	HIP	GLYG	PUL	MAL	MEL	MLZ	Acidification of methyl beta-D-glucopyranosideMbeta DG	TAG	beta MAN	URE
8762	-	-	+	-	+/-	+	+/-	-	-	+	+	+/-	+	-	-	-	-	+	+	-	+	+	-	-	+	+	-	-	-	+/-	-	-
8762	-	-	+	-	-	+	-	-	-	+	+	-	+	-	-	-	-	-	-	-	-	-	-	-	+	+	-	-	-	-	-	-

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host	#Human	-
#Host Body-Site	#Oral cavity and airways	#Plaque

Isolation

@ref	Sample type	Host species
8762	human plaque	Homo sapiens
67770	Human plaque	Homo sapiens

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
8762	2	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	NCBI tax ID	Score
124043	ASM1612791v1 assembly for Streptococcus oralis FDAARGOS_1021	complete	GCA_016127915	1303.922	1303	98.67

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
67770	Streptococcus sp. JCM 5704 gene for 16S ribosomal RNA, partial sequence	LC269277	1491		1987065

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: ASM1612791v1 assembly for Streptococcus oralis FDAARGOS_1021
BV-BRC: 1303.922

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	facultative anaerobe	91.07	no
125439	gram_stain	BacteriaNetⓘ	positive	64.84	no
125439	spore_formation	BacteriaNetⓘ	no	91.16	no
125439	motility	BacteriaNetⓘ	no	81.05	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Streptococcus oralis strain FDAARGOS_1021 strain Not applicable
PATRIC: 1303.922

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	89.66	no
125438	anaerobic	anaerobicⓘ	no	90.67	no
125438	spore-forming	spore-formingⓘ	no	86.28	no
125438	aerobic	aerobicⓘ	no	98.58	no
125438	thermophilic	thermophileⓘ	no	97.00	yes
125438	flagellated	motile2+ⓘ	no	90.00	no

Literature

Title	Authors	Journal	DOI	Year
Characterization of the salivary microbiome before and after antibiotic therapy via separation technique.	Pauter-Iwicka K, Railean V, Zloch M, Pomastowski P, Szultka-Mlynska M, Blonska D, Kupczyk W, Buszewski B.	Appl Microbiol Biotechnol	10.1007/s00253-023-12371-0	2023

References

#8762	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 20395
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#68381	Automatically annotated from API rID32STR .
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

Rate our new design

Content

About us

Streptococcus oralis (DSM 20395, 43364, JCM 5704)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Murein

Metabolite utilization

Metabolite production

Metabolite tests

Enzymes

API rID32STR

Isolation, sampling and environmental information

Isolation source categories

Isolation

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_016127915

16S sequences

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

Help

Social Media