Strain identifier

BacDive ID: 14739

Type strain: No

Species: Streptococcus oralis

Strain Designation: 43364

Strain history: DSM 20395 <-- Kiel 43364 ("Streptococcus viridans").

NCBI tax ID(s): 1303 (species)

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General

@ref: 8762

BacDive-ID: 14739

DSM-Number: 20395

keywords: genome sequence, 16S sequence, Bacteria, mesophilic

description: Streptococcus oralis 43364 is a mesophilic bacterium that was isolated from human plaque.

NCBI tax id

  • NCBI tax id: 1303
  • Matching level: species

strain history

@refhistory
8762<- Kiel, 43364 (Streptococcus viridans biotype I)
67770DSM 20395 <-- Kiel 43364 ("Streptococcus viridans").

doi: 10.13145/bacdive14739.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Bacilli
  • order: Lactobacillales
  • family: Streptococcaceae
  • genus: Streptococcus
  • species: Streptococcus oralis
  • full scientific name: Streptococcus oralis Bridge and Sneath 1982

@ref: 8762

domain: Bacteria

phylum: Firmicutes

class: Bacilli

order: Lactobacillales

family: Streptococcaceae

genus: Streptococcus

species: Streptococcus oralis

full scientific name: Streptococcus oralis Bridge and Sneath 1982 emend. Kilpper-Bälz et al. 1985 emend. Kilian et al. 1989 emend. Jensen et al. 2016

strain designation: 43364

type strain: no

Morphology

cell morphology

@refmotilityconfidencegram stain
69480no94.968
69480100positive

Culture and growth conditions

culture medium

@refnamegrowthlink
8762TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)yeshttps://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium92.pdf
8762COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)yeshttps://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium693.pdf

culture temp

@refgrowthtypetemperaturerange
8762positivegrowth37mesophilic
67770positivegrowth37mesophilic

Physiology and metabolism

spore formation

@refspore formationconfidence
69481no100
69480no99.975

murein

  • @ref: 8762
  • murein short key: A11
  • type: A1alpha L-Lys-direct

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6838129016arginine-hydrolysis
6838116899D-mannitol-builds acid from
6838130911sorbitol-builds acid from
6838117716lactose+builds acid from
6838127082trehalose+builds acid from
6838117992sucrose+builds acid from
6838130849L-arabinose-builds acid from
6838118333D-arabitol-builds acid from
6838140585alpha-cyclodextrin-builds acid from
68381606565hippurate-hydrolysis
6838128087glycogen-builds acid from
6838127941pullulan+builds acid from
6838117306maltose+builds acid from
6838128053melibiose-builds acid from
683816731melezitose-builds acid from
68381320055methyl beta-D-glucopyranoside-builds acid from
6838116199urea-hydrolysis

metabolite production

  • @ref: 68381
  • Chebi-ID: 15688
  • metabolite: acetoin
  • production: no

metabolite tests

  • @ref: 68381
  • Chebi-ID: 15688
  • metabolite: acetoin
  • voges-proskauer-test: -

enzymes

@refvalueactivityec
68381urease-3.5.1.5
68381beta-mannosidase-3.2.1.25
68381pyrrolidonyl arylamidase-3.4.19.3
68381alkaline phosphatase+3.1.3.1
68381beta-glucuronidase-3.2.1.31
68381beta-glucosidase-3.2.1.21
68381arginine dihydrolase-3.5.3.6

API rID32STR

@refADH Argbeta GLUbeta GARbeta GURalpha GALPALRIBMANSORLACTRERAFSACLARADARLCDEXVPAPPAbeta GALPyrAbeta NAGGTAHIPGLYGPULMALMELMLZMbeta DGTAGbeta MANURE
8762--+-+/-++/---+++/-+----++-++--++---+/---
8762--+--+---++-+-----------++------

Isolation, sampling and environmental information

isolation

@refsample type
8762human plaque
67770Human plaque

isolation source categories

Cat1Cat2Cat3
#Host#Human
#Host Body Product#Oral cavity and Airways#Dental plaque

Safety information

risk assessment

  • @ref: 8762
  • biosafety level: 2
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 67770
  • description: Streptococcus sp. JCM 5704 gene for 16S ribosomal RNA, partial sequence
  • accession: LC269277
  • length: 1491
  • database: ena
  • NCBI tax ID: 1987065

Genome sequences

  • @ref: 66792
  • description: Streptococcus oralis strain FDAARGOS_1021
  • accession: 1303.922
  • assembly level: complete
  • database: patric
  • NCBI tax ID: 1303

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno100no
motileno94.999no
gram-positiveyes94.56no
anaerobicno93.961no
halophileyes75.119no
spore-formingno93.881no
thermophileno99.59yes
glucose-utilyes84.507no
flagellatedno96.297no
aerobicno97.366no
glucose-fermentyes88.342no

External links

@ref: 8762

culture collection no.: DSM 20395, JCM 5704

straininfo link

  • @ref: 83857
  • straininfo: 49628

Reference

@idauthorscataloguedoi/urltitle
8762Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 20395)https://www.dsmz.de/collection/catalogue/details/culture/DSM-20395
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
68381Automatically annotated from API rID32STR
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch10.21203/rs.3.rs-2527258/v1Predictions based on the model GenomeNet Sporulation v. 1
83857Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID49628.1StrainInfo: A central database for resolving microbial strain identifiers