Name: Streptococcus equinus Pearl 11
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 14719

Type strain:

Species: Streptococcus equinus

Strain Designation: Pearl 11

Culture col. no.: DSM 20480, ATCC 33317, NCDO 597, NCTC 8177, WDCM 00133, JCM 5802, ACM 3539, CCUG 17828, CCUG 34832, CECT 213, CECT 974, CGMCC 1.2502, CIP 102302, JCM 7877, LMG 8518, NCIMB 700597

Strain history: CIP <- 1986, NCFB <- P.M.F. Shattock, Reading, UK: strain Pearl 11

NCBI tax ID(s): 1210006 (strain), 1335 (species)

SI-ID 92503

LMG 16884, ACM 3539, ATCC 33317, CCUG 34832, CIP 102302, DSM 20480, JCM 5802, JCM 7877, LMG 8518, NCFB 597, NCTC 8177, NCDO 597, CCUG 17828, NCTC 8777, NCIMB 700597, CECT 213, CCRC 14729, CECT 974, BCRC 14729, HAMBI 1527, KCTC 3959, CNCTC 6732, CGMCC 1.2502, CECT 966

Other strains from Streptococcus equinus

S. equinus Hl2B, H12B, DSM 20558, ATCC 9812, ... (type strain)
S. equinus 1, DSM 20062
S. equinus CIP 103245, NCDO 2127, JCM 7883
S. equinus TR5, CIP 82.5, NCDO 2491, NCTC ...
S. equinus CCUG 11666, NCTC 10389
S. equinus CCUG 13552
S. equinus CCUG 31964
S. equinus CCUG 33096
S. equinus CCUG 34833, NCTC 8140, JCM 7878, ...
S. equinus CCUG 38009
S. equinus CCUG 41793
S. equinus CCUG 47736
S. equinus JCM 7882, NCDO 2446, NCIMB 702128

Section

Streptococcus equinus Pearl 11 is a microaerophile, mesophilic human pathogen that was isolated from cow dung.

human pathogen
mesophilic
microaerophile
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Bacilli*
	Order	*Lactobacillales*
	Family	*Streptococcaceae*
	Genus	*Streptococcus*
	Species	**Streptococcus equinus**
	Full Scientific Name (LPSN)	Streptococcus equinus Andrewes and Horder 1906 (Approved Lists 1980)

Synonym

Streptococcus bovis

Information on morphological and physiological properties Morphology

[Ref.: #119123]	Gram stain	positive
[Ref.: #69480]	Gram stain	positive Confidence in %100

[Ref.: #119123]	Cell shape	coccus-shaped

[Ref.: #119123]	Motility	no
[Ref.: #69480]	Motility	no Confidence in %91.93

[Ref.: #8849]	Type of hemolysis	alpha
[Ref.: #8849]	Hemolysis ability	1
[Ref.: #8849]	Incubation period	1-2 days

Information on culture and growth conditions Culture and growth conditions

[Ref.: #8849]

Culture medium

COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)

[Ref.: #8849]

Culture medium growth

[Ref.: #8849]

Culture medium link

Medium recipe at MediaDive

[Ref.: #8849]

Culture medium composition

expand / minimize

[Ref.: #8849]

Culture medium

TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)

[Ref.: #8849]

Culture medium growth

[Ref.: #8849]

Culture medium link

Medium recipe at MediaDive

[Ref.: #8849]

Culture medium composition

expand / minimize

[Ref.: #38102]

Culture medium

MEDIUM 6 - Columbia agar with 10 % horse blood

[Ref.: #38102]

Culture medium growth

[Ref.: #38102]

Culture medium composition

expand / minimize

[Ref.: #119123]

Culture medium

CIP Medium 6

[Ref.: #119123]

Culture medium growth

[Ref.: #119123]

Culture medium link

Medium recipe provided by DSMZ

	Kind of temperature		Temperature
[Ref.: #8849]		growth	37 °C
[Ref.: #38102]		growth	37 °C
[Ref.: #67770]		growth	37 °C
[Ref.: #119123]		growth	25-45 °C
[Ref.: #119123]	no	growth	10 °C

[Ref.: #8849]	Temperature range	mesophilic
[Ref.: #38102]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic
[Ref.: #119123]	Temperature range	psychrophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #8849]	Oxygen tolerance	microaerophile
[Ref.: #119123]	Oxygen tolerance	facultative anaerobe

[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.991

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #119123]		NaCl	no	growth	6.5	%

[Ref.: #8849]	Murein short key	A11.29
[Ref.: #8849]	Murein types	A3alpha L-Lys-L-Thr-L-Ser(L-Ala)

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68381]	alpha-cyclodextrin ChEBI	-	builds acid from	* from API rID32STR
[Ref.: #68381]	arginine ChEBI	-	hydrolysis	* from API rID32STR
[Ref.: #68381]	D-arabitol ChEBI	-	builds acid from	* from API rID32STR
[Ref.: #68381]	D-mannitol ChEBI	-	builds acid from	* from API rID32STR
[Ref.: #68381]	D-tagatose ChEBI	-	builds acid from	* from API rID32STR
[Ref.: #119123]	esculin ChEBI	+	hydrolysis
[Ref.: #68381]	glycogen ChEBI	+	builds acid from	* from API rID32STR
[Ref.: #119123]	hippurate ChEBI	-	hydrolysis
[Ref.: #68381]	hippurate ChEBI	-	hydrolysis	* from API rID32STR
[Ref.: #68381]	L-arabinose ChEBI	-	builds acid from	* from API rID32STR
[Ref.: #68381]	lactose ChEBI	+	builds acid from	* from API rID32STR
[Ref.: #68381]	maltose ChEBI	+	builds acid from	* from API rID32STR
[Ref.: #68381]	melezitose ChEBI	-	builds acid from	* from API rID32STR
[Ref.: #68381]	melibiose ChEBI	+	builds acid from	* from API rID32STR
[Ref.: #68381]	methyl beta-D-glucopyranoside ChEBI	+	builds acid from	* from API rID32STR
[Ref.: #119123]	nitrate ChEBI	-	reduction
[Ref.: #119123]	nitrate ChEBI	+	respiration
[Ref.: #119123]	nitrite ChEBI	-	reduction
[Ref.: #68381]	raffinose ChEBI	+	builds acid from	* from API rID32STR
[Ref.: #68381]	sorbitol ChEBI	-	builds acid from	* from API rID32STR
[Ref.: #68381]	sucrose ChEBI	+	builds acid from	* from API rID32STR
[Ref.: #68381]	trehalose ChEBI	-	builds acid from	* from API rID32STR
[Ref.: #68381]	urea ChEBI	-	hydrolysis	* from API rID32STR
	Only first 10 entries are displayed. Click here to see all.

	Antibiotica	Metabolite	Antibiotic sensitivity	Antibiotic resistance
[Ref.: #119123]		0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)	no	yes

	Metabolite production	Metabolite	Production
[Ref.: #68381]		acetoin ChEBI	yes	* from API rID32STR

	Physiological tests	Metabolite	Voges-Proskauer-test
[Ref.: #119123]		acetoin ChEBI	-
[Ref.: #68381]		acetoin ChEBI	+	* from API rID32STR

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #68381]	Alanyl-Phenylalanyl-Proline arylamidase	+		* from API rID32STR
[Ref.: #119123]	alcohol dehydrogenase	-	1.1.1.1
[Ref.: #68381]	alkaline phosphatase	-	3.1.3.1	* from API rID32STR, API zym
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68381]	alpha-galactosidase	+	3.2.1.22	* from API rID32STR, API zym
[Ref.: #68382]	alpha-glucosidase	+	3.2.1.20	* from API zym
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #68381]	arginine dihydrolase	-	3.5.3.6	* from API rID32STR
[Ref.: #119123]	beta-galactosidase	+	3.2.1.23
[Ref.: #68381]	beta-galactosidase	-	3.2.1.23	* from API rID32STR, API zym
[Ref.: #68381]	beta-glucosidase	+	3.2.1.21	* from API rID32STR, API zym
[Ref.: #68381]	beta-glucuronidase	-	3.2.1.31	* from API rID32STR, API zym
[Ref.: #8849]	catalase	-	1.11.1.6
[Ref.: #119123]	catalase	-	1.11.1.6
[Ref.: #68382]	cystine arylamidase	-	3.4.11.3	* from API zym
[Ref.: #8849]	cytochrome-c oxidase	-	1.9.3.1
[Ref.: #68382]	esterase (C 4)	+		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	+		* from API zym
[Ref.: #119123]	gamma-glutamyltransferase	-	2.3.2.2
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #119123]	lysine decarboxylase	-	4.1.1.18
[Ref.: #68381]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API rID32STR, API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	-		* from API zym
[Ref.: #119123]	ornithine decarboxylase	-	4.1.1.17
[Ref.: #119123]	oxidase	-
[Ref.: #68381]	pyrrolidonyl arylamidase	-	3.4.19.3	* from API rID32STR
[Ref.: #68382]	trypsin	-	3.4.21.4	* from API zym
[Ref.: #68381]	urease	-	3.5.1.5	* from API rID32STR
[Ref.: #68382]	valine arylamidase	-		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® rID32STR:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Arginine dihydrolaseADH (Arg)	beta-Glucosidasebeta GLU	beta-Galactosidasebeta GAR	beta-Glucuronidasebeta GUR	alpha-Galactosidasealpha GAL	Alkaline PhosphatasePAL	Acid from D-riboseRIB	Acid from D-mannitolMAN	Acid from sorbitolSOR	Acid from lactoseLAC	Acid from trehaloseTRE	Acid from raffinoseRAF	Acid from sucroseSAC	Acid from L-arabinoseLARA	Acid from D-arabitolDARL	Acid from alpha-cyclodextrinCDEX	Acetoin production (Voges Proskauer test)VP	Alanyl-Phenylalanyl-Proline arylamidaseAPPA	beta-Galactosidasebeta GAL	Pyrrolidonyl arylamidasePyrA	N-Acetyl-glucosaminidasebeta NAG	Glycyl-tryptophan arylamidaseGTA	Hydrolysis of hippuric acidHIP	Acid from glycogenGLYG	Acid from pullulanPUL	Acid from maltoseMAL	Acid from melibioseMEL	Acid from melezitoseMLZ	Acidification of methyl beta-D-glucopyranosideMbeta DG	Acid from D-tagatoseTAG	beta-Mannosidasebeta MAN	Urease/urea hydrolysisURE
[Ref.: #8849]	10809	-	+	-	-	+	-	-	-	-	+	-	+	+	-	-	-	+	+	-	-	-	-	-	+	+	+	+	-	+	-	+	-
[Ref.: #8849]	10427	-	+	-	-	+	-	+/-	-	-	+	-	+	+	-	-	-	+	+	-	-	-	-	-	+	-	+	+	-	+	-	+/-	-
[Ref.: #8849]	10426	-	+	-	-	+	-	-	-	-	+	-	+	+	-	-	-	+	+	-	-	-	+	-	+	+	+	+	-	+	-	-	-
[Ref.: #8849]	10425	-	+	-	-	+	-	-	-	-	+	-	+	+	-	-	-	+	+	-	-	-	+	-	+	+	+	+	-	+	-	-	-

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #119123]	7001	-	-	+	+	-	+	-	-	-	-	+	-	+	-	-	+	+	-	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #8849]	Sample type/isolated from	cow dung

[Ref.: #67770]	Sample type/isolated from	Cow feces

[Ref.: #119123]	Sample type/isolated from	Animal, Cow, dung
* marker position based on {}

Isolation sources categories

#Host	#Mammals	#Bovinae (Cow, Cattle)
#Host Body Product	#Gastrointestinal tract	#Feces (Stool)

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence LC145574 (>99% sequence identity) for Streptococcus from Microbeatlas

Aquatic Samples	1799
Soil Samples	419
Animal Samples	33925
Plant Samples	666
Total Samples	36809

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #8849]	Pathogenicity (human)	yes
[Ref.: #8849]	Pathogenicity (animal)	yes
[Ref.: #8849]	Biosafety level	2	Risk group (German classification) According to TRBA 466
[Ref.: #119123]	Biosafety level	2	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #8849]	Streptococcus bovis DNA for 16S rRNA, strain ATCC 33317, NCDO 597	AB002482	1457	ENA	1210006 tax ID
[Ref.: #67770]	Streptococcus equinus gene for 16S ribosomal RNA, partial sequence, strain: JCM 5802	LC145574	1501	ENA	1335 tax ID
[Ref.: #20218]	Streptococcus bovis 16S ribosomal RNA	M58835	1551	ENA	1335 tax ID	*
[Ref.: #20218]	Streptococcus bovis strain ATCC 33317 16S-23S ribosomal RNA intergenic spacer, complete sequence	AY347544	271	ENA	1210006 tax ID	*
[Ref.: #20218]	S.bovis 16S rRNA	X58317	1334	ENA	1335 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Streptococcus equinus ATCC 33317	GCA_000747195	contig	GenBank	1210006 tax ID	*
[Ref.: #66792]	Streptococcus equinus ATCC 33317	1210006.5	wgs	PATRIC	1210006 tax ID	*
[Ref.: #66792]	Streptococcus bovis ATCC 33317	2600255054	draft	JGI IMG/M	1210006 tax ID	*

[Ref.: #8849]	GC-content	37.7 mol%
[Ref.: #67770]	GC-content	37.6 mol%	thermal denaturation, midpoint method (Tm)
[Ref.: #67770]	GC-content	37.7 mol%	thermal denaturation, midpoint method (Tm)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Streptococcus equinus ATCC 33317 PATRIC: 1210006.5
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Streptococcus equinus ATCC 33317 PATRIC: 1210006.5
[Ref.: #69480]	motile	no	93.305	no
[Ref.: #69480]	gram-positive	yes	94.14	no
[Ref.: #69480]	anaerobic	no	88.399	yes
[Ref.: #69480]	aerobic	no	98.319	yes
[Ref.: #69480]	halophile	yes	79.667	no
[Ref.: #69480]	spore-forming	no	95.188	no
[Ref.: #69480]	glucose-util	yes	89.317	no
[Ref.: #69480]	flagellated	no	96.052	no
[Ref.: #69480]	thermophile	no	99.417	yes
[Ref.: #69480]	glucose-ferment	yes	76.394	no

Availability in culture collections External links

[Ref.: #8849]

Culture collection no.

DSM 20480, ATCC 33317, NCDO 597, NCTC 8177, WDCM 00133, JCM 5802, ACM 3539, CCUG 17828, CCUG 34832, CECT 213, CECT 974, CGMCC 1.2502, CIP 102302, JCM 7877, LMG 8518, NCIMB 700597

[Ref.: #83837]

SI-ID 92503

Literature:

Topic	Title	Authors	Journal	DOI	Year
Genetics	Draft Genome Sequences of Streptococcus bovis Strains ATCC 33317 and JB1.	Benahmed FH, Gopinath GR, Harbottle H, Cotta MA, Luo Y, Henderson C, Teri P, Soppet D, Rasmussen M, Whitehead TR, Davidson M	Genome Announc	10.1128/genomeA.01012-14	2014	*
Phylogeny	16S ribosomal DNA sequence analysis distinguishes biotypes of Streptococcus bovis: Streptococcus bovis Biotype II/2 is a separate genospecies and the predominant clinical isolate in adult males.	Clarridge JE 3rd, Attorri SM, Zhang Q, Bartell J	J Clin Microbiol	10.1128/JCM.39.4.1549-1552.2001	2001	*

References

#8849

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 20480

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#38102 ; Curators of the CIP;

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68381

Automatically annotated from API rID32STR .

#68382

Automatically annotated from API zym .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#83837

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID92503.1 )

#119123 Collection of Institut Pasteur ; Curators of the CIP; CIP 102302
* These data were automatically processed and therefore are not curated

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Streptococcus equinus ATCC 33317

Streptococcus equinus ATCC 33317

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