Strain identifier

BacDive ID: 14719

Type strain: No

Species: Streptococcus equinus

Strain Designation: Pearl 11

Strain history: CIP <- 1986, NCFB <- P.M.F. Shattock, Reading, UK: strain Pearl 11

NCBI tax ID(s): 1210006 (strain), 1335 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 8849

BacDive-ID: 14719

DSM-Number: 20480

keywords: genome sequence, 16S sequence, Bacteria, microaerophile, mesophilic, human pathogen

description: Streptococcus equinus Pearl 11 is a microaerophile, mesophilic human pathogen that was isolated from cow dung.

NCBI tax id

NCBI tax idMatching level
1210006strain
1335species

strain history

@refhistory
8849<- NCDO <- P.M.F. Shattock, Pearl 11
67770DSM 20480 <-- NCDO 597 <-- P. M. F. Shattock strain Pearl 11.
119123CIP <- 1986, NCFB <- P.M.F. Shattock, Reading, UK: strain Pearl 11

doi: 10.13145/bacdive14719.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Bacilli
  • order: Lactobacillales
  • family: Streptococcaceae
  • genus: Streptococcus
  • species: Streptococcus equinus
  • full scientific name: Streptococcus equinus Andrewes and Horder 1906 (Approved Lists 1980)
  • synonyms

    • @ref: 20215
    • synonym: Streptococcus bovis

@ref: 8849

domain: Bacteria

phylum: Firmicutes

class: Bacilli

order: Lactobacillales

family: Streptococcaceae

genus: Streptococcus

species: Streptococcus equinus

full scientific name: Streptococcus equinus Andrewes and Horder 1906

strain designation: Pearl 11

type strain: no

Morphology

cell morphology

@refmotilityconfidencegram staincell shape
69480no91.93
69480100positive
119123nopositivecoccus-shaped

colony morphology

@reftype of hemolysishemolysis abilityincubation period
8849alpha11-2 days
119123

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
8849COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)yeshttps://mediadive.dsmz.de/medium/693Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base
8849TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)yeshttps://mediadive.dsmz.de/medium/92Name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Yeast extract 3.0 g/l Distilled water
38102MEDIUM 6 - Columbia agar with 10 % horse bloodyesDistilled water make up to (1000.000 ml);Columbia agar (39.000 g);Horseblood (100.000 ml)
119123CIP Medium 6yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=6

culture temp

@refgrowthtypetemperaturerange
8849positivegrowth37mesophilic
38102positivegrowth37mesophilic
67770positivegrowth37mesophilic
119123positivegrowth25-45
119123nogrowth10psychrophilic

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
8849microaerophile
119123facultative anaerobe

spore formation

@refspore formationconfidence
69481no100
69480no99.991

halophily

  • @ref: 119123
  • salt: NaCl
  • growth: no
  • tested relation: growth
  • concentration: 6.5 %

murein

  • @ref: 8849
  • murein short key: A11.29
  • type: A3alpha L-Lys-L-Thr-L-Ser(L-Ala)

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
1191234853esculin+hydrolysis
119123606565hippurate-hydrolysis
11912317632nitrate-reduction
11912316301nitrite-reduction
11912317632nitrate+respiration
6838129016arginine-hydrolysis
6838116899D-mannitol-builds acid from
6838130911sorbitol-builds acid from
6838117716lactose+builds acid from
6838127082trehalose-builds acid from
6838116634raffinose+builds acid from
6838117992sucrose+builds acid from
6838130849L-arabinose-builds acid from
6838118333D-arabitol-builds acid from
6838140585alpha-cyclodextrin-builds acid from
68381606565hippurate-hydrolysis
6838128087glycogen+builds acid from
6838117306maltose+builds acid from
6838128053melibiose+builds acid from
683816731melezitose-builds acid from
68381320055methyl beta-D-glucopyranoside+builds acid from
6838116443D-tagatose-builds acid from
6838116199urea-hydrolysis

antibiotic resistance

  • @ref: 119123
  • metabolite: 0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)
  • is antibiotic: yes
  • is sensitive: no
  • is resistant: yes

metabolite production

  • @ref: 68381
  • Chebi-ID: 15688
  • metabolite: acetoin
  • production: yes

metabolite tests

@refChebi-IDmetabolitevoges-proskauer-test
6838115688acetoin+
11912315688acetoin-

enzymes

@refvalueactivityec
8849catalase-1.11.1.6
8849cytochrome-c oxidase-1.9.3.1
68381urease-3.5.1.5
68381N-acetyl-beta-glucosaminidase-3.2.1.52
68381pyrrolidonyl arylamidase-3.4.19.3
68381beta-galactosidase-3.2.1.23
68381Alanyl-Phenylalanyl-Proline arylamidase+
68381alkaline phosphatase-3.1.3.1
68381alpha-galactosidase+3.2.1.22
68381beta-glucuronidase-3.2.1.31
68381beta-glucosidase+3.2.1.21
68381arginine dihydrolase-3.5.3.6
119123oxidase-
119123beta-galactosidase+3.2.1.23
119123alcohol dehydrogenase-1.1.1.1
119123catalase-1.11.1.6
119123gamma-glutamyltransferase-2.3.2.2
119123lysine decarboxylase-4.1.1.18
119123ornithine decarboxylase-4.1.1.17
68382alkaline phosphatase-3.1.3.1
68382esterase (C 4)+
68382esterase lipase (C 8)+
68382lipase (C 14)-
68382leucine arylamidase+3.4.11.1
68382valine arylamidase-
68382cystine arylamidase-3.4.11.3
68382trypsin-3.4.21.4
68382alpha-chymotrypsin-3.4.21.1
68382acid phosphatase+3.1.3.2
68382naphthol-AS-BI-phosphohydrolase-
68382alpha-galactosidase+3.2.1.22
68382beta-galactosidase-3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase+3.2.1.20
68382beta-glucosidase+3.2.1.21
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382alpha-mannosidase-3.2.1.24
68382alpha-fucosidase-3.2.1.51

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
119123--++-+----+-+--++---

API rID32STR

@refADH Argbeta GLUbeta GARbeta GURalpha GALPALRIBMANSORLACTRERAFSACLARADARLCDEXVPAPPAbeta GALPyrAbeta NAGGTAHIPGLYGPULMALMELMLZMbeta DGTAGbeta MANURE
8849-+--+----+-++---++-----++++-+-+-
8849-+--+-+/---+-++---++-----+-++-+-+/--
8849-+--+----+-++---++---+-++++-+---
8849-+--+----+-++---++---+-++++-+---

Isolation, sampling and environmental information

isolation

@refsample type
8849cow dung
67770Cow feces
119123Animal, Cow, dung

isolation source categories

Cat1Cat2Cat3
#Host#Mammals#Bovinae (Cow, Cattle)
#Host Body Product#Gastrointestinal tract#Feces (Stool)

taxonmaps

  • @ref: 69479
  • File name: preview.99_1029.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_4;96_100;97_690;98_805;99_1029&stattab=map
  • Last taxonomy: Streptococcus
  • 16S sequence: LC145574
  • Sequence Identity:
  • Total samples: 36809
  • soil counts: 419
  • aquatic counts: 1799
  • animal counts: 33925
  • plant counts: 666

Safety information

risk assessment

@refpathogenicity humanpathogenicity animalbiosafety levelbiosafety level comment
8849yesyes2Risk group (German classification)
1191232Risk group (French classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Streptococcus bovis strain ATCC 33317 16S-23S ribosomal RNA intergenic spacer, complete sequenceAY347544271ena1210006
20218Streptococcus bovis 16S ribosomal RNAM588351551ena1335
20218S.bovis 16S rRNAX583171334ena1335
8849Streptococcus bovis DNA for 16S rRNA, strain ATCC 33317, NCDO 597AB0024821457ena1210006
67770Streptococcus equinus gene for 16S ribosomal RNA, partial sequence, strain: JCM 5802LC1455741501ena1335

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Streptococcus equinus ATCC 33317GCA_000747195contigncbi1210006
66792Streptococcus equinus ATCC 333171210006.5wgspatric1210006
66792Streptococcus bovis ATCC 333172600255054draftimg1210006

GC content

@refGC-contentmethod
884937.7
6777037.6thermal denaturation, midpoint method (Tm)
6777037.7thermal denaturation, midpoint method (Tm)

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno100no
motileno93.305no
gram-positiveyes94.14no
anaerobicno88.399yes
aerobicno98.319yes
halophileyes79.667no
spore-formingno95.188no
glucose-utilyes89.317no
flagellatedno96.052no
thermophileno99.417yes
glucose-fermentyes76.394no

External links

@ref: 8849

culture collection no.: DSM 20480, ATCC 33317, NCDO 597, NCTC 8177, WDCM 00133, JCM 5802, ACM 3539, CCUG 17828, CCUG 34832, CECT 213, CECT 974, CGMCC 1.2502, CIP 102302, JCM 7877, LMG 8518, NCIMB 700597

straininfo link

  • @ref: 83837
  • straininfo: 92503

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny1128308516S ribosomal DNA sequence analysis distinguishes biotypes of Streptococcus bovis: Streptococcus bovis Biotype II/2 is a separate genospecies and the predominant clinical isolate in adult males.Clarridge JE 3rd, Attorri SM, Zhang Q, Bartell JJ Clin Microbiol10.1128/JCM.39.4.1549-1552.20012001Adult, *Bacterial Typing Techniques, Child, DNA, Bacterial/genetics, DNA, Ribosomal/genetics, *Genes, rRNA, Genotype, Humans, Male, Molecular Sequence Data, Phenotype, RNA, Ribosomal, 16S/*genetics, Sequence Analysis, DNA, Streptococcal Infections/*microbiology, Streptococcus bovis/*classification/genetics/isolation & purificationGenetics
Genetics25301652Draft Genome Sequences of Streptococcus bovis Strains ATCC 33317 and JB1.Benahmed FH, Gopinath GR, Harbottle H, Cotta MA, Luo Y, Henderson C, Teri P, Soppet D, Rasmussen M, Whitehead TR, Davidson MGenome Announc10.1128/genomeA.01012-142014

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
8849Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 20480)https://www.dsmz.de/collection/catalogue/details/culture/DSM-20480
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
38102Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/13973
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
68381Automatically annotated from API rID32STR
68382Automatically annotated from API zym
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch10.21203/rs.3.rs-2527258/v1Predictions based on the model GenomeNet Sporulation v. 1
83837Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID92503.1StrainInfo: A central database for resolving microbial strain identifiers
119123Curators of the CIPCollection of Institut Pasteur (CIP 102302)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20102302