Staphylococcus hominis subsp. hominis (DSM 20328, ATCC 27844, JCM 31912)

Name: Staphylococcus hominis subsp. hominis (DSM 20328, ATCC 27844, JCM 31912)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 14636

Type strain

Strain Designation DM 122

Culture col. no. DSM 20328 ATCC 27844 JCM 31912 CCUG 35516 DM 122 14 more

NCBI tax ID(s) 1290 145391

Special Collections DSMZ CCUG JCM KCTC CIP

History <- K.H. Schleifer <- W.E. Kloos, DM 122 DSM 20328 <-- K. H. Schleifer <-- W. E. Kloos; DM 122. CIP <- 1981, J. Pillet, Inst. Pasteur, Paris, France, Staphylococcus hominis <- ATCC <- Kloos: strain DM 122

Links

Staphylococcus hominis subsp. hominis DM 122 is an aerobe, Gram-positive, motile bacterium that was isolated from human skin.

Gram-positive motile coccus-shaped aerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 7700

LMG 13348,ATCC 27844,DSM 20328,JCM 31912,PCM 2122,MTCC 6150,CCUG 35516,CCM 3474,CCUG 6468,JCM 2419,NCTC 11320,CCRC 12156,CECT 234,KCTC 3343,NRRL B-14737,BCRC 12156,CCT 7445,CIP 102258,CIP 81.57,VTT E-97769,CNCTC 5675

@ref 20215

Last LPSN update 2026-02-09 11:21:28

Domain Bacteria

Phylum Bacillota

Class Bacilli

Order Caryophanales

Family Staphylococcaceae

Genus Staphylococcus

Species Staphylococcus hominis subsp. hominis

Full scientific name Staphylococcus hominis subsp. hominis (Kloos and Schleifer 1975) Kloos et al. 1998

BacDive ID	Other strains from **Staphylococcus hominis subsp. hominis** (2)	Type strain
14637	S. hominis subsp. hominis KL 243, DSM 20329, ATCC 27845, CCM 2732
14638	S. hominis subsp. hominis MK 129, DSM 20330, ATCC 27846, CCM 2733

Morphology

Cell morphology

@ref	Gram stain	Cell shape	Motility	Confidence
119956	positive	coccus-shaped
125439	positive			93.1

Colony morphology

@ref	Incubation period	Hemolysis ability
8719	1-2 days
119956		1

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
8719	COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)	Medium recipe at MediaDive	Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base
8719	TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)	Medium recipe at MediaDive	Name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Yeast extract 3.0 g/l Distilled water
32816	MEDIUM 72- for trypto casein soja agar		Distilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g)
119956	CIP Medium 72	Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)
8719	positive	growth	37
32816	positive	growth	37
52786	positive	growth	37
67770	positive	growth	37
119956	positive	growth	22-45
119956	negative	growth	10

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
52786	aerobe
119956	facultative anaerobe
125439	obligate aerobe	92.3

Murein

@ref	Murein short key	Type
8719	A11.03	A3alpha L-Lys-Gly₂_-₄-L-Ser₁_-₂-Gly

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
68375	29016 ChEBI	arginine	-	hydrolysis	from API ID32STA
68375	17057 ChEBI	cellobiose	-	fermentation	from API ID32STA
68375	15824 ChEBI	D-fructose	+	fermentation	from API ID32STA
68375	17634 ChEBI	D-glucose	+	fermentation	from API ID32STA
68375	16024 ChEBI	D-mannose	-	fermentation	from API ID32STA
68375	16988 ChEBI	D-ribose	-	fermentation	from API ID32STA
68375	4853 ChEBI	esculin	-	hydrolysis	from API ID32STA
119956	606565 ChEBI	hippurate	-	hydrolysis
68375	17716 ChEBI	lactose	+	fermentation	from API ID32STA
68375	17306 ChEBI	maltose	+	fermentation	from API ID32STA
68375	17632 ChEBI	nitrate	+	reduction	from API ID32STA
119956	17632 ChEBI	nitrate	+	reduction
119956	16301 ChEBI	nitrite	-	reduction
68375	18257 ChEBI	ornithine	-	degradation	from API ID32STA
68375	16634 ChEBI	raffinose	-	fermentation	from API ID32STA
68375	17992 ChEBI	sucrose	+	fermentation	from API ID32STA
68375	27082 ChEBI	trehalose	+	fermentation	from API ID32STA
68375	16199 ChEBI	urea	+	hydrolysis	from API ID32STA

Metabolite production

@ref	Chebi-ID	Metabolite	Production
119956	35581 ChEBI	indole

Metabolite tests

@ref	Chebi-ID	Metabolite	Voges-proskauer-test
119956	15688 ChEBI	acetoin	-

Enzymes

@ref	Value	Activity	Ec
68382	acid phosphatase	+	3.1.3.2	from API zym
119956	alcohol dehydrogenase	-	1.1.1.1
68382	alkaline phosphatase	+	3.1.3.1	from API zym
68382	alpha-chymotrypsin	-	3.4.21.1	from API zym
68382	alpha-fucosidase	-	3.2.1.51	from API zym
68382	alpha-galactosidase	-	3.2.1.22	from API zym
68382	alpha-glucosidase	+	3.2.1.20	from API zym
68382	alpha-mannosidase	-	3.2.1.24	from API zym
68375	arginine dihydrolase	-	3.5.3.6	from API ID32STA
68382	beta-galactosidase	-	3.2.1.23	from API zym
119956	beta-galactosidase	+	3.2.1.23
68382	beta-glucosidase	-	3.2.1.21	from API zym
68375	beta-glucosidase	-	3.2.1.21	from API ID32STA
68382	beta-glucuronidase	-	3.2.1.31	from API zym
68375	beta-glucuronidase	-	3.2.1.31	from API ID32STA
8719	catalase	+	1.11.1.6
119956	catalase	+	1.11.1.6
119956	coagulase	-
68382	cystine arylamidase	+	3.4.11.3	from API zym
8719	cytochrome-c oxidase	-	1.9.3.1
119956	DNase	-
68382	esterase (C 4)	+		from API zym
68382	esterase lipase (C 8)	+		from API zym
119956	gamma-glutamyltransferase	-	2.3.2.2
119956	gelatinase	-
68375	L-arginine arylamidase	-		from API ID32STA
119956	lecithinase	-
68382	leucine arylamidase	-	3.4.11.1	from API zym
68382	lipase (C 14)	+		from API zym
119956	lysine decarboxylase	-	4.1.1.18
68382	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API zym
68382	naphthol-AS-BI-phosphohydrolase	+		from API zym
119956	ornithine decarboxylase	-	4.1.1.17
68375	ornithine decarboxylase	-	4.1.1.17	from API ID32STA
119956	oxidase	-
68382	trypsin	-	3.4.21.4	from API zym
119956	tween esterase	-
119956	urease	+	3.5.1.5
68375	urease	+	3.5.1.5	from API ID32STA
68382	valine arylamidase	-		from API zym

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
119956	-	+	+	+	+	-	-	+	-	-	+	+	-	-	-	+	-	-	-	-

API ID32STA

@ref	URE	ADH (Arg)	ODC	ESC	GLU	FRU	MNE	MAL	LAC	TRE	MAN	RAF	RIB	CEL	Reduction of nitrateNIT	Acetoin production (Voges Proskauer test)VP	beta GAL	L-arginine arylamidaseArgA	PAL	Pyrrolidonyl arylamidasePyrA	NOVO	SAC	NAG	TUR	ARA	beta GUR
8719	+	-	-	-	+	+	-	+	+	+	-	-	-	-	+	+	-	-	-	+/-	-	+	+/-	+	-	-
8719	+	-	-	-	+	+	-	+	+	+	-	-	-	-	+	-	+/-	-	+/-	+/-	-	+	+	+	-	-
8719	+	-	-	-	+	+	-	+	+	+	-	-	-	-	+	+	-	-	-	-	-	+	+	+	-	-
8719	+	-	-	-	+	+	-	+	+	+	-	-	-	-	not determinedn.d.	-	-	-	-	-	-	+	+	+	-	-
8719	+	-	-	-	+	+	-	+	+	+	-	-	-	-	+	+	-	-	-	-	-	+	+	+	-	-
8719	+	-	-	-	+	+	-	+	+	+	-	-	-	-	+	-	-	-	-	-	-	+	+	+	-	-
8719	+	-	-	-	+	+	-	+	+	+	+	-	-	-	+	+	+	-	-	-	+/-	+	+	+	+	-
8719	+	-	-	-	+	+	-	+	+	+	-	-	-	-	+	+	-	-	-	-	-	+	+	+	-	-
8719	+	-	-	-	+	+	-	+	+	+	-	-	-	-	+	+	-	-	-	+/-	-	+	+	+/-	-	-

API biotype100

@ref	ControlQ	D-glucose as carbon sourceGLU	D-fructose as carbon sourceFRU	D-galactose as carbon sourceGAL	D-trehalose as carbon sourceTRE	D-mannose as carbon sourceMNE	L-sorbose as carbon sourceSBE	D-melibiose as carbon sourceMEL	sucrose as carbon sourceSAC	D-raffinose as carbon sourceRAF	maltotriose as carbon sourceMTE	maltose as carbon sourceMAL	lactose as carbon sourceLAC	lactulose as carbon sourceLTE	1-O-methyl-beta-galactopyranoside as carbon sourceMbGa	1-O-methyl-alpha-galactopyranoside as carbon sourceMaGa	D-cellobiose as carbon sourceCEL	gentiobiose as carbon sourceGEN	1-O-methyl-beta-D-glucopyranoside as carbon sourceMbGu	esculin as carbon sourceESC	D-ribose as carbon sourceRIB	L-arabinose as carbon sourceARA	D-xylose as carbon sourceXYL	palatinose as carbon sourcePLE	L-rhamnose as carbon sourceRHA	L-fucose as carbon sourceFUC	D-melezitose as carbon sourceMLZ	D-arabitol as carbon sourceDARL	L-arabitol as carbon sourceLARL	xylitol as carbon sourceXLT	dulcitol as carbon sourceDUL	D-tagatose as carbon sourceTAG	glycerol as carbon sourceGLY	myo-inositol as carbon sourceINO	D-mannitol as carbon sourceMAN	maltitol as carbon sourceMTL	D-turanose as carbon sourceTUR	D-sorbitol as carbon sourceSOR	adonitol as carbon sourceADO	hydroxyquinoline-beta-glucuronide as carbon sourceHBG	D-lyxose as carbon sourceLYX	i-erythritol as carbon sourceERY	1-O-methyl-alpha-D-glucoside as carbon sourceMDG	3-O-methyl-D-glucose as carbon source3MDG	D-saccharate as carbon sourceSAT	mucate as carbon sourceMUC	L-tartrate as carbon sourceLTAT	D-tartrate as carbon sourceDTAT	meso-tartrate as carbon sourceMTAT	D-malate as carbon sourceDMLT	L-malate as carbon sourceLMLT	cis-aconitate as carbon sourceCATE	trans-aconitate as carbon sourceTATE	tricarballylate as carbon sourceTTE	citrate as carbon sourceCIT	D-glucuronate as carbon sourceGRT	D-galacturonate as carbon sourceGAT	2-ketogluconate as carbon source2KG	5-ketogluconate as carbon source5KG	tryptophan as carbon sourceTRY	N-acetyl-D-glucosamine as carbon sourceNAG	D-gluconate as carbon sourceGNT	phenylacetate as carbon sourcePAC	protocatechuate as carbon sourcePAT	4-hydroxybenzoate as carbon sourcepOBE	quinate as carbon sourceQAT	gentisate as carbon sourceGTE	3-hydroxybenzoate as carbon sourcemOBE	benzoate as carbon sourceBAT	3-phenylpropionate as carbon sourcePPAT	m-coumarate as carbon sourceCMT	trigonelline as carbon sourceTGE	betaine as carbon sourceBET	putrescine as carbon sourcePCE	4-aminobutyrate as carbon sourceABT	histamine as carbon sourceHIN	DL-lactate as carbon sourceLAT	caprate as carbon sourceCAP	caprylate as carbon sourceCYT	L-histidine as carbon sourceHIS	succinate as carbon sourceSUC	fumarate as carbon sourceFUM	glutarate as carbon sourceGRE	DL-glycerate as carbon sourceGYT	5-aminovalerate as carbon sourceAVT	ethanolamine as carbon sourceETN	tryptamine as carbon sourceTTN	D-glucosamine as carbon sourceGLN	itaconate as carbon sourceITA	3-hydroxybutyrate as carbon source3OBU	L-aspartate as carbon sourceAPT	L-glutamate as carbon sourceGTT	L-proline as carbon sourcePRO	D-alanine as carbon sourceDALA	L-alanine as carbon sourceLALA	L-serine as carbon sourceSER	malonate as carbon sourceMNT	propionate as carbon sourcePROP	L-tyrosine as carbon sourceTYR	2-ketoglutarate as carbon source2KT
119956	not determinedn.d.	+	+	+	+	-	-	-	+	-	+	+	+	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host	#Human	-
#Host Body-Site	#Organ	#Skin, Nail, Hair

Isolation

@ref	Sample type
8719	human skin
52786	Human skin
67770	Human skin
119956	Human, Skin

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
8719	2	Risk group (German classification) According to TRBA 466
119956	2	Risk group (French classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
67770	41665_G01 assembly for Staphylococcus hominis NCTC 11320	contig	GCA_900458635	1290.133	8115180594	1290	73.96
67770	ASM290184v1 assembly for Staphylococcus hominis subsp. hominis NCTC 11320	scaffold	GCA_002901845	145391.8	8052783282	145391	62.71

16S sequences

@ref	Description	Accession	Length	NCBI tax ID
20218	Staphylococcus hominis subsp. hominis strain DSM 20328 16S ribosomal RNA gene, partial sequence	AY688063	464	145391
20218	Staphylococcus hominis 16S ribosomal RNA (16S rRNA) gene	L37601	1468	1290
20218	S.hominis gene for 16S ribosomal RNA	Z26905	771	1290
8719	Staphylococcus hominis strain DM 122 16S ribosomal RNA, partial sequence	NR_036956	1544	1290
67770	S.hominis gene for 16S ribosomal RNA	X66101	1544	1290
124043	Staphylococcus hominis strain DSM 20328 16S ribosomal RNA gene, partial sequence.	MW227553	1427	1290
124043	Staphylococcus hominis strain DSM 20328 16S ribosomal RNA gene, partial sequence.	PQ524590	601	1290
124043	Staphylococcus hominis subsp. hominis strain DSM 20328 16S ribosomal RNA gene, partial sequence.	MF678939	1283	145391
124043	Staphylococcus hominis subsp. hominis strain DSM 20328 16S ribosomal RNA gene, partial sequence 16S-23S ribosomal RNA intergenic spacer, complete sequence and 23S ribosomal RNA gene, partial sequence.	MF678883	4339	145391

GC content

@ref	GC-content (mol%)	Method
8719	33.7
67770	33.7	thermal denaturation, midpoint method (Tm)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Staphylococcus hominis subsp. hominis NCTC 11320
NCBI: GCA_002901845

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	92.30	no
125439	gram_stain	BacteriaNetⓘ	positive	93.10	no
125439	motility	BacteriaNetⓘ	no	62.70	no
125439	spore_formation	BacteriaNetⓘ	no	84.70	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Staphylococcus hominis strain NCTC11320
PATRIC: 1290.133

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	89.47	no
125438	anaerobic	anaerobicⓘ	no	97.71	yes
125438	spore-forming	spore-formingⓘ	no	76.88	no
125438	aerobic	aerobicⓘ	yes	61.50	no
125438	thermophilic	thermophileⓘ	no	97.29	yes
125438	flagellated	motile2+ⓘ	no	85.05	no

Literature

Topic	Title	Authors	Journal	DOI	Year
	The Effect of Salvia tomentosa Miller Extracts, Rich in Rosmarinic, Salvianolic and Lithospermic Acids, on Bacteria Causing Opportunistic Infections.	Piatczak E, Kolniak-Ostek J, Gonciarz W, Lisiecki P, Kalinowska-Lis U, Szemraj M, Chmiela M, Zielinska S.	Molecules	10.3390/molecules29030590	2024
	Use of bacterial isolates in the treatment of textile dye wastewater: A review.	Moyo S, Makhanya BP, Zwane PE.	Heliyon	10.1016/j.heliyon.2022.e09632	2022
Phylogeny	Phenotypic and Genotypic Identification of Bacteria Isolated From Traditionally Prepared Dry Starters of the Eastern Himalayas.	Pradhan P, Tamang JP.	Front Microbiol	10.3389/fmicb.2019.02526	2019
Metabolism	Bacterial degradation of anthraquinone dyes.	Li HH, Wang YT, Wang Y, Wang HX, Sun KK, Lu ZM.	J Zhejiang Univ Sci B	10.1631/jzus.b1900165	2019
Phylogeny	Comparison of three amplicon sequencing approaches to determine staphylococcal populations on human skin.	Ahle CM, Stodkilde-Jorgensen K, Poehlein A, Streit WR, Hupeden J, Bruggemann H.	BMC Microbiol	10.1186/s12866-021-02284-1	2021
	Bacteria Modify Their Sensitivity to Chemerin-Derived Peptides by Hindering Peptide Association With the Cell Surface and Peptide Oxidation.	Godlewska U, Bilska B, Majewski P, Pyza E, Zabel BA, Cichy J.	Front Microbiol	10.3389/fmicb.2020.01819	2020
	The Bacterial Life Cycle in Textiles is Governed by Fiber Hydrophobicity.	Mollebjerg A, Palmen LG, Gori K, Meyer RL.	Microbiol Spectr	10.1128/spectrum.01185-21	2021
Transcriptome	Partial rpoB Gene Sequencing Identification and Probiotic Potential of Floricoccus penangensis ML061-4 Isolated from Assam Tea (Camellia sinensis var. assamica).	Rungsirivanich P, Inta A, Tragoolpua Y, Thongwai N.	Sci Rep	10.1038/s41598-019-52979-9	2019
	Influence of the densities and nutritional components of bacterial colonies on the culture-enriched gut bacterial community structure.	Gu Y, Yan D, Wu M, Li M, Li P, Wang J, Chang Y, Yang F, Di S, Ni S, Yang M, Liu J.	AMB Express	10.1186/s13568-021-01240-6	2021
Phylogeny	Identification of airborne microbiota in selected areas in a health-care setting in South Africa.	Setlhare G, Malebo N, Shale K, Lues R.	BMC Microbiol	10.1186/1471-2180-14-100	2014
Phylogeny	Phylogenetic affiliation and determination of bioactive compounds of bacterial population associated with organs of mud crab, Scylla olivacea.	Zote J, Passari AK, Zothanpuia, Siddaiah CN, Kumar NS, Abd Allah EF, Hashem A, Alqarawi AA, Malik JA, Singh BP.	Saudi J Biol Sci	10.1016/j.sjbs.2018.08.025	2018
Phylogeny	Development and Validation of a Reference Data Set for Assigning Staphylococcus Species Based on Next-Generation Sequencing of the 16S-23S rRNA Region.	Kosecka-Strojek M, Sabat AJ, Akkerboom V, Becker K, van Zanten E, Wisselink G, Miedzobrodzki J, Kooistra-Smid AMDM, Friedrich AW.	Front Cell Infect Microbiol	10.3389/fcimb.2019.00278	2019
Phylogeny	A primary assessment of the endophytic bacterial community in a xerophilous moss (Grimmia montana) using molecular method and cultivated isolates.	Liu XL, Liu SL, Liu M, Kong BH, Liu L, Li YH.	Braz J Microbiol	10.1590/s1517-83822014000100022	2014
Phylogeny	Evaluation of a triplex PCR assay to discriminate Staphylococcus aureus from coagulase-negative Staphylococci and determine methicillin resistance from blood cultures.	Maes N, Magdalena J, Rottiers S, De Gheldre Y, Struelens MJ.	J Clin Microbiol	10.1128/jcm.40.4.1514-1517.2002	2002
Enzymology	An Integrative Approach to Study Bacterial Enzymatic Degradation of Toxic Dyes.	Mishra A, Takkar S, Joshi NC, Shukla S, Shukla K, Singh A, Manikonda A, Varma A.	Front Microbiol	10.3389/fmicb.2021.802544	2021
Pathogenicity	Isolation and characterization of bacteria resistant to metallic copper surfaces.	Santo CE, Morais PV, Grass G.	Appl Environ Microbiol	10.1128/aem.01952-09	2010
	Differential Modulation of Skin Barrier Proteins and Lipid Synthesis by Staphylococcus aureus, Staphylococcus hominis, and Cutibacterium acnes.	Kim H, Kim A, Kim H, Seo D, Son S, Kim D, Shin JU.	Ann Dermatol	10.5021/ad.25.020	2025
	Protocol for the development, assembly, and testing of a synthetic skin microbial community.	Thiruppathy D, Lekbua A, Coker J, Weng Y, Askarian F, Kousha A, Marotz C, Hauw A, Tjuanta M, Nizet V, Zengler K.	STAR Protoc	10.1016/j.xpro.2025.103714	2025
	Green Synthesis of Hexagonal-like ZnO Nanoparticles Modified with Phytochemicals of Clove (Syzygium aromaticum) and Thymus capitatus Extracts: Enhanced Antibacterial, Antifungal, and Antioxidant Activities.	Haiouani K, Hegazy S, Alsaeedi H, Bechelany M, Barhoum A.	Materials (Basel)	10.3390/ma17174340	2024
	Determination of Biological Activity and Biochemical Content of Ethanol Extract from Fruiting Body of Tricholoma bufonium (Pers.) Gillet.	Benek A, Turu D, Canli K.	J Fungi (Basel)	10.3390/jof10110761	2024
	The prevalence of multidrug resistance in Staphylococcus hominis isolated from clinical materials.	Szemraj M, Glajzner P, Olszowiec K, Sienkiewicz M.	Sci Rep	10.1038/s41598-024-84500-2	2025
Pathogenicity	SkinCom, a synthetic skin microbial community, enables reproducible investigations of the human skin microbiome.	Lekbua A, Thiruppathy D, Coker J, Weng Y, Askarian F, Kousha A, Marotz C, Hauw A, Nizet V, Zengler K.	Cell Rep Methods	10.1016/j.crmeth.2024.100832	2024
	Phytochemical Profiles, Antimicrobial and Antioxidant Activity of Knautia integrifolia (L.) Bertol. subsp. integrifolia.	Kilinc H.	Plants (Basel)	10.3390/plants14030466	2025
	The abundance of the potential pathogen Staphylococcus hominis in the air microbiome in a dental clinic and its susceptibility to far-UVC light.	Aquino de Muro M, Shuryak I, Uhlemann AC, Tillman A, Seeram D, Zakaria J, Welch D, Erde SM, Brenner DJ.	Microbiologyopen	10.1002/mbo3.1348	2023
	Molecular Differentiation and Detection of AMR Genes from Nosocomial Staphylococcus spp.	Carneiro I, da Silva WLP, de Souza Santos DR, de Filippis I.	Pathogens	10.3390/pathogens14050403	2025
	Antimicrobial effect of methylene blue in microbiologic culture to diagnose periprosthetic joint infection: an in vitro study.	Liu K, Luo Y, Hao L, Chen J.	J Orthop Surg Res	10.1186/s13018-022-03475-w	2022
	Biochemical, Antioxidant Properties and Antimicrobial Activity of Epiphytic Leafy Liverwort Frullania dilatata (L.) Dumort.	Simsek O, Canli K, Benek A, Turu D, Altuner EM.	Plants (Basel)	10.3390/plants12091877	2023
	Selective Bacteriocins: A Promising Treatment for Staphylococcus aureus Skin Infections Reveals Insights into Resistant Mutants, Vancomycin Resistance, and Cell Wall Alterations.	Jaumaux F, Petit K, Martin A, Rodriguez-Villalobos H, Vermeersch M, Perez-Morga D, Gabant P.	Antibiotics (Basel)	10.3390/antibiotics12060947	2023
	Development and diagnostic performance of a sensitive multiplex pneumonia pathogen identification assay for emergency department patients with pneumonia.	Tsui P-Y, Hong C-W, Tsai Y-D, Chien C-Y, Chen Y-L, Huang H-H, Hung C-M, Lin F-P, Liang C-C, Lin C-Y, Tsai S, Hsu H-L.	Microbiol Spectr	10.1128/spectrum.00811-25	2025
	Conyza canadensis from Jordan: Phytochemical Profiling, Antioxidant, and Antimicrobial Activity Evaluation.	Barhoumi LM, Shakya AK, Al-Fawares O, Al-Jaber HI.	Molecules	10.3390/molecules29102403	2024
	Rapid and sensitive detection of methicillin-resistant Staphylococcus aureus through the RPA-PfAgo system.	Chen W, Zhang J, Wei H, Su J, Lin J, Liang X, Chen J, Zhou R, Li L, Lu Z, Sun G.	Front Microbiol	10.3389/fmicb.2024.1422574	2024
	Rapid Detection of mecA and femA Genes by Loop-Mediated Isothermal Amplification in a Microfluidic System for Discrimination of Different Staphylococcal Species and Prediction of Methicillin Resistance.	Meng X, Zhang G, Sun B, Liu S, Wang Y, Gao M, Fan Y, Zhang G, Shi G, Kang X.	Front Microbiol	10.3389/fmicb.2020.01487	2020
	Berberine and its nanoformulations and extracts: potential strategies and future perspectives against multi-drug resistant bacterial infections.	Yang X, Wang Y, Li L, Tang D, Yan Z, Li M, Jiang J, Bi D.	Front Microbiol	10.3389/fmicb.2025.1643409	2025
	A Boron-Dependent Antibiotic Derived from a Calcium-Dependent Antibiotic.	Chiou SL, Chen YJ, Lee CT, Ho MN, Miao J, Kuo PC, Hsu CC, Lin YS, Chu J.	Angew Chem Int Ed Engl	10.1002/anie.202317522	2024
	In Vitro Antimicrobial Activity of Frankincense Oils from Boswellia sacra Grown in Different Locations of the Dhofar Region (Oman).	Di Stefano V, Schillaci D, Cusimano MG, Rishan M, Rashan L.	Antibiotics (Basel)	10.3390/antibiotics9040195	2020
	Biological Activities and Biochemical Composition of Endemic Achillea fraasii.	Tunca-Pinarli Y, Benek A, Turu D, Bozyel ME, Canli K, Altuner EM.	Microorganisms	10.3390/microorganisms11040978	2023
Metabolism	Staphylococcus hominis subspecies can be identified by SDS-PAGE or MALDI-TOF MS profiles.	Pereira EM, de Mattos CS, Dos Santos OC, Ferreira DC, de Oliveira TLR, Laport MS, de Oliveira Ferreira E, Dos Santos KRN.	Sci Rep	10.1038/s41598-019-48248-4	2019
	A Rapid Antimicrobial Resistance Diagnostic Platform for Staphylococcus aureus Using Recombinase Polymerase Amplification.	Lin C, Zeng Y, Zhu Z, Liao J, Yang T, Liu Y, Wei H, Li J, Ma J, Wu X, Lin G, Lin L, Chen L, Huang H, Chen W, Wang J, Wen F, Lin M.	Microbiol Spectr	10.1128/spectrum.04476-22	2023
	Coagulase-Negative Staphylococci Clones Are Widely Distributed in the Hospital and Community.	Pinheiro-Hubinger L, Moraes Riboli DF, Abraao LM, Pereira Franchi EPL, Ribeiro de Souza da Cunha ML.	Pathogens	10.3390/pathogens10070792	2021
	Does Use of Lidocaine Affect Culture of Synovial Fluid Obtained to Diagnose Periprosthetic Joint Infection (PJI)? An In Vitro Study.	Liu K, Ye L, Sun W, Hao L, Luo Y, Chen J.	Med Sci Monit	10.12659/msm.908585	2018
Biotechnology	Validation of the Peel Plate Staphylococcus Aureus (SA) Test for Enumeration of S. aureus in Selected Foods and Non-Cultured Dairy Products: AOAC Performance Tested MethodSM 082401.	Salter RS, Durbin GW, Li S, Gilbert M, Crowley ES, Deterding A, Bastin B.	J AOAC Int	10.1093/jaoacint/qsae083	2025
	A Rapid and Sensitive Detection Method for Pseudomonas aeruginosa Using Visualized Recombinase Polymerase Amplification and Lateral Flow Strip Technology.	Yang H, Wang Y, Yang Q, Fan H, Wang L, Zhang T, Li Z, Liu G, Zhao P, Wu H, Dong J, Liang W.	Front Cell Infect Microbiol	10.3389/fcimb.2021.698929	2021
	Staphylococcal Biofilm on the Surface of Catheters: Electron Microscopy Evaluation of the Inhibition of Biofilm Growth by RNAIII Inhibiting Peptide.	de Oliveira A, Pinheiro-Hubinger L, Pereira VC, Riboli DFM, Martins KB, Romero LC, Cunha MLRSD.	Antibiotics (Basel)	10.3390/antibiotics10070879	2021
	Whole-Genome Sequence and Classification of 11 Endophytic Bacteria from Poison Ivy (Toxicodendron radicans).	Tran PN, Tan NE, Lee YP, Gan HM, Polter SJ, Dailey LK, Hudson AO, Savka MA.	Genome Announc	10.1128/genomea.01319-15	2015
Pathogenicity	Antibiotic Susceptibility of Biofilm Cells and Molecular Characterisation of Staphylococcus hominis Isolates from Blood.	Mendoza-Olazaran S, Morfin-Otero R, Villarreal-Trevino L, Rodriguez-Noriega E, Llaca-Diaz J, Camacho-Ortiz A, Gonzalez GM, Casillas-Vega N, Garza-Gonzalez E.	PLoS One	10.1371/journal.pone.0144684	2015
	Skin-penetrating nematodes exhibit life-stage-specific interactions with host-associated and environmental bacteria.	Chavez IN, Brown TM, Assie A, Bryant AS, Samuel BS, Hallem EA.	BMC Biol	10.1186/s12915-021-01153-7	2021
	The carriage of interleukin-1B-31*C allele plus Staphylococcus aureus and Haemophilus influenzae increases the risk of recurrent tonsillitis in a Mexican population.	Gonzalez-Andrade B, Santos-Lartigue R, Flores-Trevino S, Ramirez-Ochoa NS, Bocanegra-Ibarias P, Huerta-Torres FJ, Mendoza-Olazaran S, Villarreal-Trevino L, Camacho-Ortiz A, Villarreal-Vazquez H, Garza-Gonzalez E.	PLoS One	10.1371/journal.pone.0178115	2017
Pathogenicity	Microbiological and molecular characterization of Staphylococcus hominis isolates from blood.	Mendoza-Olazaran S, Morfin-Otero R, Rodriguez-Noriega E, Llaca-Diaz J, Flores-Trevino S, Gonzalez-Gonzalez GM, Villarreal-Trevino L, Garza-Gonzalez E.	PLoS One	10.1371/journal.pone.0061161	2013
Transcriptome	Rapid pathogen identification using a novel microarray-based assay with purulent meningitis in cerebrospinal fluid.	Hou Y, Zhang X, Hou X, Wu R, Wang Y, He X, Wang L, Wang Z.	Sci Rep	10.1038/s41598-018-34051-0	2018
Pathogenicity	Staphylococcal species less frequently isolated from human clinical specimens - are they a threat for hospital patients?	Szemraj M, Grazul M, Balcerczak E, Szewczyk EM.	BMC Infect Dis	10.1186/s12879-020-4841-2	2020
	Multilocus sequence typing and further genetic characterization of the enigmatic pathogen, Staphylococcus hominis.	Zhang L, Thomas JC, Miragaia M, Bouchami O, Chaves F, d'Azevedo PA, Aanensen DM, de Lencastre H, Gray BM, Robinson DA.	PLoS One	10.1371/journal.pone.0066496	2013
Phylogeny	Evaluation of Sensititre plates for identification of clinically relevant coagulase-negative staphylococci.	Garza-Gonzalez E, Morfin-Otero R, Macedo P, Gonzalez GM, Llaca-Diaz JM, Perez-Gomez R, Rodriguez-Noriega E.	J Clin Microbiol	10.1128/jcm.02086-09	2010
Enzymology	Performance of SaSelect, a chromogenic medium for detection of staphylococci in clinical specimens.	Hirvonen JJ, Kerttula AM, Kaukoranta SS.	J Clin Microbiol	10.1128/jcm.03129-13	2014
	Marine Pseudovibrio sp. as a novel source of antimicrobials.	Crowley SP, O'Gara F, O'Sullivan O, Cotter PD, Dobson AD.	Mar Drugs	10.3390/md12125916	2014
	Synthesis and antibacterial activities of antibacterial peptides with a spiropyran fluorescence probe.	Chen L, Zhu Y, Yang D, Zou R, Wu J, Tian H.	Sci Rep	10.1038/srep06860	2014
	Multiple staphylococcal cassette chromosomes and allelic variants of cassette chromosome recombinases in Staphylococcus aureus and coagulase-negative staphylococci from Norway.	Hanssen AM, Sollid JU.	Antimicrob Agents Chemother	10.1128/aac.00978-06	2007
Phylogeny	Detection of methicillin-resistant Staphylococcus aureus by a duplex droplet digital PCR assay.	Kelley K, Cosman A, Belgrader P, Chapman B, Sullivan DC.	J Clin Microbiol	10.1128/jcm.00196-13	2013
Pathogenicity	Cationic Intrinsically Disordered Antimicrobial Peptides (CIDAMPs) Represent a New Paradigm of Innate Defense with a Potential for Novel Anti-Infectives.	Latendorf T, Gerstel U, Wu Z, Bartels J, Becker A, Tholey A, Schroder JM.	Sci Rep	10.1038/s41598-019-39219-w	2019
Phylogeny	A 16S rRNA Gene and Draft Genome Database for the Murine Oral Bacterial Community.	Joseph S, Aduse-Opoku J, Hashim A, Hanski E, Streich R, Knowles SCL, Pedersen AB, Wade WG, Curtis MA.	mSystems	10.1128/msystems.01222-20	2021
Phylogeny	Glyceraldehyde-3-phosphate dehydrogenase-encoding gene as a useful taxonomic tool for Staphylococcus spp.	Yugueros J, Temprano A, Berzal B, Sanchez M, Hernanz C, Luengo JM, Naharro G.	J Clin Microbiol	10.1128/jcm.38.12.4351-4355.2000	2000
	Novel non-mecA-containing staphylococcal chromosomal cassette composite island containing pbp4 and tagF genes in a commensal staphylococcal species: a possible reservoir for antibiotic resistance islands in Staphylococcus aureus.	Mongkolrattanothai K, Boyle S, Murphy TV, Daum RS.	Antimicrob Agents Chemother	10.1128/aac.48.5.1823-1836.2004	2004
	Sphygmomanometers and thermometers as potential fomites of Staphylococcus haemolyticus: biofilm formation in the presence of antibiotics.	Sued BP, Pereira PM, Faria YV, Ramos JN, Binatti VB, Santos KR, Seabra SH, Hirata R, Vieira VV, Mattos-Guaraldi AL, Pereira JA.	Mem Inst Oswaldo Cruz	10.1590/0074-02760160381	2017
Enzymology	Development of a rapid PCR assay specific for Staphylococcus saprophyticus and application to direct detection from urine samples.	Martineau F, Picard FJ, Menard C, Roy PH, Ouellette M, Bergeron MG.	J Clin Microbiol	10.1128/jcm.38.9.3280-3284.2000	2000
Enzymology	Use of the VITEK 2 system for rapid identification of clinical isolates of Staphylococci from bloodstream infections.	Spanu T, Sanguinetti M, Ciccaglione D, D'Inzeo T, Romano L, Leone F, Fadda G.	J Clin Microbiol	10.1128/jcm.41.9.4259-4263.2003	2003
Pathogenicity	Real-time PCR assay for detection of fluoroquinolone resistance associated with grlA mutations in Staphylococcus aureus.	Lapierre P, Huletsky A, Fortin V, Picard FJ, Roy PH, Ouellette M, Bergeron MG.	J Clin Microbiol	10.1128/jcm.41.7.3246-3251.2003	2003
Phylogeny	Rapid and accurate species-level identification of coagulase-negative staphylococci by using the sodA gene as a target.	Poyart C, Quesne G, Boumaila C, Trieu-Cuot P.	J Clin Microbiol	10.1128/jcm.39.12.4296-4301.2001	2001
	AOAC-OMA/MicroVal Harmonized Validation of Peel PlateTM EB (Enterobacteriaceae Bacteria), First Action 2018.05.	Salter RS, Durbin GW, Martinez D, Bird P, Bastin B, Crowley E.	J AOAC Int	10.1093/jaoacint/qsaa067	2020
Phylogeny	Lysostaphin disk test for routine presumptive identification of staphylococci.	Poutrel B, Caffin JP.	J Clin Microbiol	10.1128/jcm.13.6.1023-1025.1981	1981
Phylogeny	Development of a PCR assay for identification of staphylococci at genus and species levels.	Martineau F, Picard FJ, Ke D, Paradis S, Roy PH, Ouellette M, Bergeron MG.	J Clin Microbiol	10.1128/jcm.39.7.2541-2547.2001	2001
Enzymology	Evaluation of the Staph-Zym system with staphylococci isolated from bovine intramammary infections.	Watts JL, Washburn PJ.	J Clin Microbiol	10.1128/jcm.29.1.59-61.1991	1991
Enzymology	An improved small-molecule inhibitor of FtsZ with superior in vitro potency, drug-like properties, and in vivo efficacy.	Stokes NR, Baker N, Bennett JM, Berry J, Collins I, Czaplewski LG, Logan A, Macdonald R, Macleod L, Peasley H, Mitchell JP, Nayal N, Yadav A, Srivastava A, Haydon DJ.	Antimicrob Agents Chemother	10.1128/aac.01580-12	2013
Enzymology	Evaluation of MicroScan Rapid Pos Combo panels for identification of staphylococci.	Stoakes L, Schieven BC, Ofori E, Ewan P, Lannigan R, Hussain Z.	J Clin Microbiol	10.1128/jcm.30.1.93-95.1992	1992
Enzymology	Use of tuf sequences for genus-specific PCR detection and phylogenetic analysis of 28 streptococcal species.	Picard FJ, Ke D, Boudreau DK, Boissinot M, Huletsky A, Richard D, Ouellette M, Roy PH, Bergeron MG.	J Clin Microbiol	10.1128/jcm.42.8.3686-3695.2004	2004
Enzymology	Rapid concentration and molecular enrichment approach for sensitive detection of Escherichia coli and Shigella species in potable water samples.	Maheux AF, Bissonnette L, Boissinot M, Bernier JL, Huppe V, Picard FJ, Berube E, Bergeron MG.	Appl Environ Microbiol	10.1128/aem.02337-10	2011
	Development of a PCR assay for rapid detection of enterococci.	Ke D, Picard FJ, Martineau F, Menard C, Roy PH, Ouellette M, Bergeron MG.	J Clin Microbiol	10.1128/jcm.37.11.3497-3503.1999	1999
Enzymology	Species-specific and ubiquitous-DNA-based assays for rapid identification of Staphylococcus aureus.	Martineau F, Picard FJ, Roy PH, Ouellette M, Bergeron MG.	J Clin Microbiol	10.1128/jcm.36.3.618-623.1998	1998
Phylogeny	Identification of Staphylococcus species and subspecies by the chaperonin 60 gene identification method and reverse checkerboard hybridization.	Goh SH, Santucci Z, Kloos WE, Faltyn M, George CG, Driedger D, Hemmingsen SM.	J Clin Microbiol	10.1128/jcm.35.12.3116-3121.1997	1997
	Evaluation of the Minitek gram-positive set for identification of staphylococci isolated from the bovine mammary gland.	Watts JL, Owens WE, Nickerson SC.	J Clin Microbiol	10.1128/jcm.23.5.873-875.1986	1986
Phylogeny	Rapid test for the serological separation of staphylococci from micrococci.	Seidl PH, Schleifer KH.	Appl Environ Microbiol	10.1128/aem.35.3.479-482.1978	1978
	The gene encoding a new mitogenic factor in a Streptococcus pyogenes strain is distributed only in group A streptococci.	Yutsudo T, Okumura K, Iwasaki M, Hara A, Kamitani S, Minamide W, Igarashi H, Hinuma Y.	Infect Immun	10.1128/iai.62.9.4000-4004.1994	1994
Enzymology	Evaluation of the Staph-Ident and STAPHase systems for identification of staphylococci from bovine intramammary infections.	Watts JL, Pankey JW, Nickerson SC.	J Clin Microbiol	10.1128/jcm.20.3.448-452.1984	1984
	Evaluation of restriction endonuclease fingerprinting of chromosomal DNA and plasmid profile analysis for characterization of multiresistant coagulase-negative staphylococci in bacteremic neonates.	Bialkowska-Hobrzanska H, Jaskot D, Hammerberg O.	J Clin Microbiol	10.1128/jcm.28.2.269-275.1990	1990
Phylogeny	Use of trehalose-mannitol-phosphatase agar to differentiate Staphylococcus epidermidis and Staphylococcus saprophyticus from other coagulase-negative staphylococci.	Stevens DL, Jones C.	J Clin Microbiol	10.1128/jcm.20.5.977-980.1984	1984
Phylogeny	Comparison of methods for identifying Staphylococcus and Micrococcus spp.	Gunn BA, Singleton FL, Peele ER, Colwell RR, Keiser JK, Kapper CO.	J Clin Microbiol	10.1128/jcm.14.2.195-200.1981	1981
Metabolism	Intracellular mannitol, a product of glucose metabolism in staphylococci.	Edwards KG, Blumenthal HJ, Khan M, Slodki ME.	J Bacteriol	10.1128/jb.146.3.1020-1029.1981	1981
	One-step loop-mediated isothermal amplification system for Mycobacterium marinum detection.	Okumura K, Miyamoto Y, Mitarai S, Ato M.	Microbiol Spectr	10.1128/spectrum.02906-24	2025
	Draft Genome Sequences of 64 Type Strains of 50 Species and 25 Subspecies of the Genus Staphylococcus Rosenbach 1884.	Cole K, Foster D, Russell JE, Golubchik T, Llewelyn M, Wilson DJ, Crook D, Paul J, Modernising Medical Microbiology Consortium.	Microbiol Resour Announc	10.1128/mra.00062-19	2019
	Lysyl-Phosphatidylglycerol: A Lipid Involved in the Resistance of Staphylococcus aureus to Antimicrobial Peptide Activity.	Vasquez A, Leidy C, Manrique-Moreno M.	Antibiotics (Basel)	10.3390/antibiotics14040349	2025
Pathogenicity	Antibiofilm Activity of the Brown Alga Halidrys siliquosa against Clinically Relevant Human Pathogens.	Busetti A, Thompson TP, Tegazzini D, Megaw J, Maggs CA, Gilmore BF.	Mar Drugs	10.3390/md13063581	2015
Phylogeny	Propionibacterium acnes types I and II represent phylogenetically distinct groups.	McDowell A, Valanne S, Ramage G, Tunney MM, Glenn JV, McLorinan GC, Bhatia A, Maisonneuve JF, Lodes M, Persing DH, Patrick S.	J Clin Microbiol	10.1128/jcm.43.1.326-334.2005	2005
Pathogenicity	Antibacterial activity of mupirocin (pseudomonic acid), a new antibiotic for topical use.	Sutherland R, Boon RJ, Griffin KE, Masters PJ, Slocombe B, White AR.	Antimicrob Agents Chemother	10.1128/aac.27.4.495	1985
Phylogeny	Evaluation of Staph ID 32 system and Staph-Zym system for identification of coagulase-negative staphylococci.	Renneberg J, Rieneck K, Gutschik E.	J Clin Microbiol	10.1128/jcm.33.5.1150-1153.1995	1995
Genetics	Identification in methicillin-susceptible Staphylococcus hominis of an active primordial mobile genetic element for the staphylococcal cassette chromosome mec of methicillin-resistant Staphylococcus aureus.	Katayama Y, Takeuchi F, Ito T, Ma XX, Ui-Mizutani Y, Kobayashi I, Hiramatsu K	J Bacteriol	10.1128/JB.185.9.2711-2722.2003	2003

References

#8719	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 20328
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#20218	Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )
#32816	; Curators of the CIP;
#52786	Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 35516
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#68375	Automatically annotated from API ID32STA .
#68382	Automatically annotated from API zym .
#119956	Collection of Institut Pasteur ; Curators of the CIP; CIP 81.57
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Staphylococcus hominis subsp. hominis (DSM 20328, ATCC 27844, JCM 31912)

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Genome browser: GCA_900458635

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