Staphylococcus hominis (DSM 104142, MRS-249-WT-4B)

Name: Staphylococcus hominis (DSM 104142, MRS-249-WT-4B)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 159396

Type strain

Strain Designation MRS-249-WT-4B

Culture col. no. DSM 104142 MRS-249-WT-4B

NCBI tax ID(s) 1290

Special Collections DSMZ Pig DZIF

Links

Staphylococcus hominis MRS-249-WT-4B is a mesophilic prokaryote that was isolated from feces; pig, 10 month old, wild type.

mesophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 403135

DSM 104142

@ref 20215

Last LPSN update 2025-12-16 10:08:15

Domain Bacillati

Phylum Bacillota

Class Bacilli

Order Caryophanales

Family Staphylococcaceae

Genus Staphylococcus

Species Staphylococcus hominis

Full scientific name Staphylococcus hominis Kloos and Schleifer 1975 (Approved Lists 1980)

BacDive ID	Other strains from **Staphylococcus hominis** (53)	Type strain
14639	S. hominis ES1-308-4, DSM 30574
14640	S. hominis ES1-134, DSM 30515
14641	S. hominis ES1-209-2, DSM 30549
14642	S. hominis ES1-305-3, DSM 30565
14643	S. hominis ES1-308-7, DSM 30576
14644	S. hominis ES2-AirT6-2, DSM 30667
14645	S. hominis K1-5, DSM 30894
14646	S. hominis K1-12, DSM 30900
14647	S. hominis K2-2, DSM 30903
24595	S. hominis A11.1, DSM 30970
24596	S. hominis A5, DSM 30940
130701	S. hominis T2_17, DSM 30984
130702	S. hominis T2_19, DSM 30986
130703	S. hominis T2_22, DSM 30988
130704	S. hominis T2_24, DSM 30990
130705	S. hominis T2_26, DSM 30991
131073	S. hominis T4_18, DSM 100547
134988	S. hominis 93.87, CIP 102833
138622	S. hominis CIP 82.3, NCTC 10649
139256	S. hominis 78.354, CIP 104689
147100	S. hominis CCUG 32856
147170	S. hominis CCUG 32983
147171	S. hominis CCUG 32984
148227	S. hominis CCUG 35071
149121	S. hominis CCUG 36890
149578	S. hominis CCUG 38005
150422	S. hominis CCUG 39873
151487	S. hominis CCUG 44139
152174	S. hominis CCUG 45970
152188	S. hominis CCUG 46005
152234	S. hominis CCUG 46179
152694	S. hominis CCUG 47389
152695	S. hominis CCUG 47390
152767	S. hominis CCUG 47576
153366	S. hominis CCUG 49354
153367	S. hominis CCUG 49355
153781	S. hominis CCUG 50963
153890	S. hominis CCUG 51538
153990	S. hominis CCUG 51862
154328	S. hominis CCUG 53108
154329	S. hominis CCUG 53109
154445	S. hominis CCUG 53639
154674	S. hominis CCUG 54810
154914	S. hominis CCUG 55675
155572	S. hominis CCUG 58194
155620	S. hominis CCUG 58453
156065	S. hominis CCUG 60252
158003	S. hominis H69, DSM 103553
172935	S. hominis BM9376, CRBIP21.61
172936	S. hominis BM9389, CRBIP21.62
172937	S. hominis BM9415, CRBIP21.63
172938	S. hominis BM9429, CRBIP21.65
175041	S. hominis 113674, DSM 113674

Morphology

Cell morphology

@ref	Gram stain	Confidence
125438	positive	90.294

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
66219	TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)		Medium recipe at MediaDive	Name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Yeast extract 3.0 g/l Distilled water
66219	COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)		Medium recipe at MediaDive	Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
66219	positive	growth	37	mesophilic

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125439	obligate aerobe	93.1

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
68375	22599 ChEBI	arabinose	-	fermentation	from API ID32STA
68375	29016 ChEBI	arginine	-	hydrolysis	from API ID32STA
68375	17057 ChEBI	cellobiose	-	fermentation	from API ID32STA
68375	15824 ChEBI	D-fructose	-	fermentation	from API ID32STA
68375	17634 ChEBI	D-glucose	+	fermentation	from API ID32STA
68375	16899 ChEBI	D-mannitol	+	fermentation	from API ID32STA
68375	16024 ChEBI	D-mannose	-	fermentation	from API ID32STA
68375	16988 ChEBI	D-ribose	-	fermentation	from API ID32STA
68375	4853 ChEBI	esculin	-	hydrolysis	from API ID32STA
68375	17716 ChEBI	lactose	-	fermentation	from API ID32STA
68375	17306 ChEBI	maltose	+	fermentation	from API ID32STA
68375	59640 ChEBI	N-acetylglucosamine	+	fermentation	from API ID32STA
68375	17632 ChEBI	nitrate	+	reduction	from API ID32STA
68375	18257 ChEBI	ornithine	-	degradation	from API ID32STA
68375	16634 ChEBI	raffinose	-	fermentation	from API ID32STA
68375	17992 ChEBI	sucrose	+	fermentation	from API ID32STA
68375	27082 ChEBI	trehalose	-	fermentation	from API ID32STA
68375	32528 ChEBI	turanose	+	fermentation	from API ID32STA
68375	16199 ChEBI	urea	+	hydrolysis	from API ID32STA

Antibiotic resistance

@ref	ChEBI	Metabolite	Is resistant	Resistance conc.
68375	28368	novobiocin		1.8 µg	from API ID32STA

Metabolite production

@ref	Chebi-ID	Metabolite	Production
68375	15688 ChEBI	acetoin		from API ID32STA

Metabolite tests

@ref	Chebi-ID	Metabolite	Voges-proskauer-test
68375	15688 ChEBI	acetoin	+	from API ID32STA

Enzymes

@ref	Value	Activity	Ec
68375	alkaline phosphatase	+	3.1.3.1	from API ID32STA
68375	arginine dihydrolase	-	3.5.3.6	from API ID32STA
68375	beta-galactosidase	-	3.2.1.23	from API ID32STA
68375	beta-glucosidase	-	3.2.1.21	from API ID32STA
68375	beta-glucuronidase	-	3.2.1.31	from API ID32STA
68375	L-arginine arylamidase	-		from API ID32STA
68375	ornithine decarboxylase	-	4.1.1.17	from API ID32STA
68375	pyrrolidonyl arylamidase	+	3.4.19.3	from API ID32STA
68375	urease	+	3.5.1.5	from API ID32STA

API ID32STA

@ref	URE	ADH (Arg)	ODC	ESC	GLU	FRU	MNE	MAL	LAC	TRE	MAN	RAF	RIB	CEL	Reduction of nitrateNIT	Acetoin production (Voges Proskauer test)VP	beta GAL	L-arginine arylamidaseArgA	PAL	Pyrrolidonyl arylamidasePyrA	NOVO	SAC	NAG	TUR	ARA	beta GUR
66219	+	-	-	-	+	-	-	+	-	-	+	-	-	-	+	+	-	-	+	+	+	+	+	+	-	-

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host Body Product	#Gastrointestinal tract	#Feces (Stool)
#Host	#Mammals	#Suidae (Pig,Swine)

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
66219	feces; pig, 10 month old, wild type	Kranzberg (Bavaria)	Germany	DEU	Europe

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	NCBI tax ID	Score
66792	ASM1284336v1 assembly for Staphylococcus hominis MRS-249-WT-4B	contig	GCA_012843365	1290.285	1290	64.36

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
66219	Staphylococcus sp. strain DSM 104142 16S ribosomal RNA gene, partial sequence	MN537464	1458		29387

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Staphylococcus hominis MRS-249-WT-4B
NCBI: GCA_012843365

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	73.50	no
125439	motility	BacteriaNetⓘ	no	55.40	no
125439	gram_stain	BacteriaNetⓘ	positive	83.70	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	93.10	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Staphylococcus hominis MRS-249-WT-4B
NCBI: GCA_012843365.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	90.29	no
125438	anaerobic	anaerobicⓘ	no	98.38	no
125438	aerobic	aerobicⓘ	yes	60.37	no
125438	spore-forming	spore-formingⓘ	no	74.36	no
125438	thermophilic	thermophileⓘ	no	95.79	no
125438	flagellated	motile2+ⓘ	no	74.05	no

Literature

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#66219	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 104142
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#68375	Automatically annotated from API ID32STA .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

Rate our new design

Content

About us