Staphylococcus hominis (CIP 82.3, NCTC 10649)

Name: Staphylococcus hominis (CIP 82.3, NCTC 10649)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 138622

Type strain

Culture col. no. CIP 82.3 NCTC 10649

NCBI tax ID(s) 1290

Special Collections CIP

History CIP <- 1982, NCTC <- 1969, A.C. Scott: M

Links

Staphylococcus hominis CIP 82.3 is a mesophilic prokaryote of the family Staphylococcaceae.

mesophilic genome sequence

Name and taxonomic classification

SI-ID 42774

ATCC 49951,NCTC 10649,CIP 82.3

@ref 20215

Last LPSN update 2025-12-16 10:03:07

Domain Bacillati

Phylum Bacillota

Class Bacilli

Order Caryophanales

Family Staphylococcaceae

Genus Staphylococcus

Species Staphylococcus hominis

Full scientific name Staphylococcus hominis Kloos and Schleifer 1975 (Approved Lists 1980)

BacDive ID	Other strains from **Staphylococcus hominis** (53)	Type strain
14639	S. hominis ES1-308-4, DSM 30574
14640	S. hominis ES1-134, DSM 30515
14641	S. hominis ES1-209-2, DSM 30549
14642	S. hominis ES1-305-3, DSM 30565
14643	S. hominis ES1-308-7, DSM 30576
14644	S. hominis ES2-AirT6-2, DSM 30667
14645	S. hominis K1-5, DSM 30894
14646	S. hominis K1-12, DSM 30900
14647	S. hominis K2-2, DSM 30903
24595	S. hominis A11.1, DSM 30970
24596	S. hominis A5, DSM 30940
130701	S. hominis T2_17, DSM 30984
130702	S. hominis T2_19, DSM 30986
130703	S. hominis T2_22, DSM 30988
130704	S. hominis T2_24, DSM 30990
130705	S. hominis T2_26, DSM 30991
131073	S. hominis T4_18, DSM 100547
134988	S. hominis 93.87, CIP 102833
139256	S. hominis 78.354, CIP 104689
147100	S. hominis CCUG 32856
147170	S. hominis CCUG 32983
147171	S. hominis CCUG 32984
148227	S. hominis CCUG 35071
149121	S. hominis CCUG 36890
149578	S. hominis CCUG 38005
150422	S. hominis CCUG 39873
151487	S. hominis CCUG 44139
152174	S. hominis CCUG 45970
152188	S. hominis CCUG 46005
152234	S. hominis CCUG 46179
152694	S. hominis CCUG 47389
152695	S. hominis CCUG 47390
152767	S. hominis CCUG 47576
153366	S. hominis CCUG 49354
153367	S. hominis CCUG 49355
153781	S. hominis CCUG 50963
153890	S. hominis CCUG 51538
153990	S. hominis CCUG 51862
154328	S. hominis CCUG 53108
154329	S. hominis CCUG 53109
154445	S. hominis CCUG 53639
154674	S. hominis CCUG 54810
154914	S. hominis CCUG 55675
155572	S. hominis CCUG 58194
155620	S. hominis CCUG 58453
156065	S. hominis CCUG 60252
158003	S. hominis H69, DSM 103553
159396	S. hominis MRS-249-WT-4B, DSM 104142
172935	S. hominis BM9376, CRBIP21.61
172936	S. hominis BM9389, CRBIP21.62
172937	S. hominis BM9415, CRBIP21.63
172938	S. hominis BM9429, CRBIP21.65
175041	S. hominis 113674, DSM 113674

Morphology

Culture and growth conditions

Culture medium

@ref	Name	Growth	Composition	Medium link
40204	MEDIUM 3 - Columbia agar		Columbia agar (39.000 g);distilled water (1000.000 ml)
40204	CIP Medium 3			Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
40204	positive	growth	37	mesophilic

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125439	facultative anaerobe	90.9

Spore formation

@ref	Spore formation	Confidence
125439		96.6

Isolation, sampling and environmental information

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent	Isolation date
40204		Glasgow	United Kingdom	GBR	Europe
40204	Hand laceration	Glasgow, Scotland	United Kingdom	GBR	Europe	1969

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
40204	1	Risk group (French classification)

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	NCBI tax ID	Score
66792	43941_A01 assembly for Staphylococcus aureus NCTC10649	contig	GCA_900457455	1280.18043	1280	75.35

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Staphylococcus aureus NCTC10649
NCBI: GCA_900457455

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	facultative anaerobe	90.90	no
125439	gram_stain	BacteriaNetⓘ	positive	89.20	no
125439	motility	BacteriaNetⓘ	no	71.20	no
125439	spore_formation	BacteriaNetⓘ	no	96.60	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Staphylococcus aureus strain NCTC10649
PATRIC: 1280.18043

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	84.63	no
125438	anaerobic	anaerobicⓘ	no	99.44	no
125438	spore-forming	spore-formingⓘ	no	73.04	no
125438	aerobic	aerobicⓘ	no	52.60	no
125438	thermophilic	thermophileⓘ	no	94.24	no
125438	flagellated	motile2+ⓘ	no	80.89	no

Literature

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#40204	Collection of Institut Pasteur ; Curators of the CIP; CIP 82.3
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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