Staphylococcus auricularis WK 811M is an obligate aerobe, Gram-positive, coccus-shaped bacterium that was isolated from human external ear.
Gram-positive coccus-shaped obligate aerobe genome sequence 16S sequence Bacteria| @ref 20215 |
|
|
| Domain Bacteria |
| Phylum Bacillota |
| Class Bacilli |
| Order Caryophanales |
| Family Staphylococcaceae |
| Genus Staphylococcus |
| Species Staphylococcus auricularis |
| Full scientific name Staphylococcus auricularis Kloos and Schleifer 1983 |
| BacDive ID | Other strains from Staphylococcus auricularis (4) | Type strain |
|---|---|---|
| 145551 | S. auricularis CCUG 28813 | |
| 145552 | S. auricularis CCUG 28814 | |
| 145553 | S. auricularis CCUG 28815 | |
| 155928 | S. auricularis CCUG 59667 |
| @ref | Name | Growth | Medium link | Composition | |
|---|---|---|---|---|---|
| 8957 | COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) | Medium recipe at MediaDive | Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base | ||
| 8957 | TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) | Medium recipe at MediaDive | Name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Yeast extract 3.0 g/l Distilled water | ||
| 34366 | MEDIUM 3 - Columbia agar | Columbia agar (39.000 g);distilled water (1000.000 ml) | |||
| 116634 | CIP Medium 3 | Medium recipe at CIP | |||
| 116634 | CIP Medium 72 | Medium recipe at CIP |
| 116634 | Oxygen toleranceobligate aerobe |
| @ref | Murein short key | Type | |
|---|---|---|---|
| 8957 | A11.03 | A3alpha L-Lys-Gly2-4-L-Ser1-2-Gly |
| @ref | Chebi-ID | Metabolite | Utilization activity | Kind of utilization tested | |
|---|---|---|---|---|---|
| 68371 | 27613 ChEBI | amygdalin | - | builds acid from | from API 50CH acid |
| 68371 | 18305 ChEBI | arbutin | - | builds acid from | from API 50CH acid |
| 68375 | 29016 ChEBI | arginine | - | hydrolysis | from API ID32STA |
| 68371 | 17057 ChEBI | cellobiose | - | builds acid from | from API 50CH acid |
| 68371 | 17108 ChEBI | D-arabinose | - | builds acid from | from API 50CH acid |
| 68371 | 18333 ChEBI | D-arabitol | - | builds acid from | from API 50CH acid |
| 68375 | 15824 ChEBI | D-fructose | + | fermentation | from API ID32STA |
| 68371 | 28847 ChEBI | D-fucose | - | builds acid from | from API 50CH acid |
| 68371 | 12936 ChEBI | D-galactose | - | builds acid from | from API 50CH acid |
| 68375 | 17634 ChEBI | D-glucose | + | fermentation | from API ID32STA |
| 68371 | 62318 ChEBI | D-lyxose | - | builds acid from | from API 50CH acid |
| 68371 | 16899 ChEBI | D-mannitol | - | builds acid from | from API 50CH acid |
| 68375 | 16024 ChEBI | D-mannose | - | fermentation | from API ID32STA |
| 68371 | 16024 ChEBI | D-mannose | - | builds acid from | from API 50CH acid |
| 68371 | 16988 ChEBI | D-ribose | - | builds acid from | from API 50CH acid |
| 68371 | 17924 ChEBI | D-sorbitol | - | builds acid from | from API 50CH acid |
| 68371 | 16443 ChEBI | D-tagatose | - | builds acid from | from API 50CH acid |
| 68371 | 65327 ChEBI | D-xylose | - | builds acid from | from API 50CH acid |
| 68371 | 17113 ChEBI | erythritol | - | builds acid from | from API 50CH acid |
| 68375 | 4853 ChEBI | esculin | - | hydrolysis | from API ID32STA |
| 68371 | 4853 ChEBI | esculin | - | builds acid from | from API 50CH acid |
| 68371 | 16813 ChEBI | galactitol | - | builds acid from | from API 50CH acid |
| 68371 | 28066 ChEBI | gentiobiose | - | builds acid from | from API 50CH acid |
| 68371 | 24265 ChEBI | gluconate | - | builds acid from | from API 50CH acid |
| 68371 | 28087 ChEBI | glycogen | - | builds acid from | from API 50CH acid |
| 116634 | 606565 ChEBI | hippurate | - | hydrolysis | |
| 68371 | 15443 ChEBI | inulin | - | builds acid from | from API 50CH acid |
| 68371 | 30849 ChEBI | L-arabinose | - | builds acid from | from API 50CH acid |
| 68371 | 18403 ChEBI | L-arabitol | - | builds acid from | from API 50CH acid |
| 68371 | 18287 ChEBI | L-fucose | - | builds acid from | from API 50CH acid |
| 68371 | 62345 ChEBI | L-rhamnose | - | builds acid from | from API 50CH acid |
| 68371 | 17266 ChEBI | L-sorbose | - | builds acid from | from API 50CH acid |
| 68371 | 65328 ChEBI | L-xylose | - | builds acid from | from API 50CH acid |
| 68375 | 17716 ChEBI | lactose | - | fermentation | from API ID32STA |
| 68371 | 17716 ChEBI | lactose | - | builds acid from | from API 50CH acid |
| 68375 | 17306 ChEBI | maltose | + | fermentation | from API ID32STA |
| 68371 | 6731 ChEBI | melezitose | - | builds acid from | from API 50CH acid |
| 68371 | 28053 ChEBI | melibiose | - | builds acid from | from API 50CH acid |
| 68371 | 320061 ChEBI | methyl alpha-D-glucopyranoside | - | builds acid from | from API 50CH acid |
| 68371 | 43943 ChEBI | methyl alpha-D-mannoside | - | builds acid from | from API 50CH acid |
| 68371 | 74863 ChEBI | methyl beta-D-xylopyranoside | - | builds acid from | from API 50CH acid |
| 68371 | 17268 ChEBI | myo-inositol | - | builds acid from | from API 50CH acid |
| 68371 | 59640 ChEBI | N-acetylglucosamine | - | builds acid from | from API 50CH acid |
| 68375 | 17632 ChEBI | nitrate | - | reduction | from API ID32STA |
| 116634 | 17632 ChEBI | nitrate | - | reduction | |
| 116634 | 16301 ChEBI | nitrite | - | reduction | |
| 68375 | 18257 ChEBI | ornithine | - | degradation | from API ID32STA |
| 68371 | Potassium 2-ketogluconate | - | builds acid from | from API 50CH acid | |
| 68371 | Potassium 5-ketogluconate | - | builds acid from | from API 50CH acid | |
| 68375 | 16634 ChEBI | raffinose | - | fermentation | from API ID32STA |
| 68371 | 16634 ChEBI | raffinose | - | builds acid from | from API 50CH acid |
| 68371 | 15963 ChEBI | ribitol | - | builds acid from | from API 50CH acid |
| 68371 | 17814 ChEBI | salicin | - | builds acid from | from API 50CH acid |
| 68371 | 28017 ChEBI | starch | - | builds acid from | from API 50CH acid |
| 68371 | 17992 ChEBI | sucrose | - | builds acid from | from API 50CH acid |
| 68375 | 27082 ChEBI | trehalose | + | fermentation | from API ID32STA |
| 68371 | 32528 ChEBI | turanose | - | builds acid from | from API 50CH acid |
| 68375 | 16199 ChEBI | urea | - | hydrolysis | from API ID32STA |
| 68371 | 17151 ChEBI | xylitol | - | builds acid from | from API 50CH acid |
| @ref | ChEBI | Metabolite | Is sensitive | Sensitivity conc. | |
|---|---|---|---|---|---|
| 68375 | 28368 | novobiocin | 1.8 µg | from API ID32STA |
| @ref | Value | Activity | Ec | |
|---|---|---|---|---|
| 68382 | acid phosphatase | + | 3.1.3.2 | from API zym |
| 116634 | alcohol dehydrogenase | - | 1.1.1.1 | |
| 68382 | alkaline phosphatase | + | 3.1.3.1 | from API zym |
| 68375 | alkaline phosphatase | - | 3.1.3.1 | from API ID32STA |
| 68382 | alpha-chymotrypsin | - | 3.4.21.1 | from API zym |
| 68382 | alpha-fucosidase | - | 3.2.1.51 | from API zym |
| 68382 | alpha-galactosidase | - | 3.2.1.22 | from API zym |
| 68382 | alpha-glucosidase | + | 3.2.1.20 | from API zym |
| 68382 | alpha-mannosidase | - | 3.2.1.24 | from API zym |
| 116634 | amylase | - | ||
| 68375 | arginine dihydrolase | - | 3.5.3.6 | from API ID32STA |
| 68382 | beta-galactosidase | + | 3.2.1.23 | from API zym |
| 68382 | beta-glucosidase | - | 3.2.1.21 | from API zym |
| 68375 | beta-glucosidase | - | 3.2.1.21 | from API ID32STA |
| 68382 | beta-glucuronidase | - | 3.2.1.31 | from API zym |
| 116634 | caseinase | - | 3.4.21.50 | |
| 8957 | catalase | + | 1.11.1.6 | |
| 116634 | catalase | + | 1.11.1.6 | |
| 116634 | coagulase | - | ||
| 68382 | cystine arylamidase | - | 3.4.11.3 | from API zym |
| 8957 | cytochrome-c oxidase | - | 1.9.3.1 | |
| 116634 | DNase | - | ||
| 68382 | esterase (C 4) | + | from API zym | |
| 68382 | esterase lipase (C 8) | + | from API zym | |
| 116634 | gamma-glutamyltransferase | - | 2.3.2.2 | |
| 116634 | gelatinase | - | ||
| 116634 | lecithinase | - | ||
| 68382 | leucine arylamidase | + | 3.4.11.1 | from API zym |
| 116634 | lipase | + | ||
| 68382 | lipase (C 14) | - | from API zym | |
| 116634 | lysine decarboxylase | - | 4.1.1.18 | |
| 68382 | N-acetyl-beta-glucosaminidase | - | 3.2.1.52 | from API zym |
| 68382 | naphthol-AS-BI-phosphohydrolase | + | from API zym | |
| 116634 | ornithine decarboxylase | - | 4.1.1.17 | |
| 68375 | ornithine decarboxylase | - | 4.1.1.17 | from API ID32STA |
| 116634 | oxidase | - | ||
| 116634 | phenylalanine ammonia-lyase | - | 4.3.1.24 | |
| 116634 | protease | - | ||
| 68375 | pyrrolidonyl arylamidase | - | 3.4.19.3 | from API ID32STA |
| 68382 | trypsin | + | 3.4.21.4 | from API zym |
| 116634 | tween esterase | - | ||
| 116634 | urease | - | 3.5.1.5 | |
| 68375 | urease | - | 3.5.1.5 | from API ID32STA |
| 68382 | valine arylamidase | - | from API zym |
| @ref | pathway | enzyme coverage | annotated reactions | external links | |
|---|---|---|---|---|---|
| 66794 | UDP-GlcNAc biosynthesis | 100 | 3 of 3 | ||
| 66794 | CDP-diacylglycerol biosynthesis | 100 | 2 of 2 | ||
| 66794 | teichoic acid biosynthesis | 100 | 1 of 1 | ||
| 66794 | adipate degradation | 100 | 2 of 2 | ||
| 66794 | ethanol fermentation | 100 | 2 of 2 | ||
| 66794 | coenzyme A metabolism | 100 | 4 of 4 | ||
| 66794 | acetate fermentation | 100 | 4 of 4 | ||
| 66794 | ppGpp biosynthesis | 100 | 4 of 4 | ||
| 66794 | pentose phosphate pathway | 100 | 11 of 11 | ||
| 66794 | acetoin degradation | 100 | 3 of 3 | ||
| 66794 | folate polyglutamylation | 100 | 1 of 1 | ||
| 66794 | anapleurotic synthesis of oxalacetate | 100 | 1 of 1 | ||
| 66794 | ribulose monophosphate pathway | 100 | 2 of 2 | ||
| 66794 | vitamin K metabolism | 100 | 5 of 5 | ||
| 66794 | palmitate biosynthesis | 95.45 | 21 of 22 | ||
| 66794 | peptidoglycan biosynthesis | 93.33 | 14 of 15 | ||
| 66794 | vitamin B1 metabolism | 92.31 | 12 of 13 | ||
| 66794 | valine metabolism | 88.89 | 8 of 9 | ||
| 66794 | chorismate metabolism | 88.89 | 8 of 9 | ||
| 66794 | gluconeogenesis | 87.5 | 7 of 8 | ||
| 66794 | C4 and CAM-carbon fixation | 87.5 | 7 of 8 | ||
| 66794 | tetrahydrofolate metabolism | 85.71 | 12 of 14 | ||
| 66794 | lipoate biosynthesis | 80 | 4 of 5 | ||
| 66794 | threonine metabolism | 80 | 8 of 10 | ||
| 66794 | flavin biosynthesis | 80 | 12 of 15 | ||
| 66794 | photosynthesis | 78.57 | 11 of 14 | ||
| 66794 | molybdenum cofactor biosynthesis | 77.78 | 7 of 9 | ||
| 66794 | sulfopterin metabolism | 75 | 3 of 4 | ||
| 66794 | ketogluconate metabolism | 75 | 6 of 8 | ||
| 66794 | butanoate fermentation | 75 | 3 of 4 | ||
| 66794 | cardiolipin biosynthesis | 71.43 | 5 of 7 | ||
| 66794 | reductive acetyl coenzyme A pathway | 71.43 | 5 of 7 | ||
| 66794 | heme metabolism | 71.43 | 10 of 14 | ||
| 66794 | glycolysis | 70.59 | 12 of 17 | ||
| 66794 | phenylalanine metabolism | 69.23 | 9 of 13 | ||
| 66794 | leucine metabolism | 69.23 | 9 of 13 | ||
| 66794 | purine metabolism | 68.09 | 64 of 94 | ||
| 66794 | glycolate and glyoxylate degradation | 66.67 | 4 of 6 | ||
| 66794 | CO2 fixation in Crenarchaeota | 66.67 | 6 of 9 | ||
| 66794 | cyanate degradation | 66.67 | 2 of 3 | ||
| 66794 | serine metabolism | 66.67 | 6 of 9 | ||
| 66794 | L-lactaldehyde degradation | 66.67 | 2 of 3 | ||
| 66794 | enterobactin biosynthesis | 66.67 | 2 of 3 | ||
| 66794 | alanine metabolism | 65.52 | 19 of 29 | ||
| 66794 | pyrimidine metabolism | 64.44 | 29 of 45 | ||
| 66794 | isoleucine metabolism | 62.5 | 5 of 8 | ||
| 66794 | 6-hydroxymethyl-dihydropterin diphosphate biosynthesis | 62.5 | 5 of 8 | ||
| 66794 | degradation of sugar alcohols | 62.5 | 10 of 16 | ||
| 66794 | urea cycle | 61.54 | 8 of 13 | ||
| 66794 | NAD metabolism | 61.11 | 11 of 18 | ||
| 66794 | glutamate and glutamine metabolism | 60.71 | 17 of 28 | ||
| 66794 | gallate degradation | 60 | 3 of 5 | ||
| 66794 | starch degradation | 60 | 6 of 10 | ||
| 66794 | methylglyoxal degradation | 60 | 3 of 5 | ||
| 66794 | glycogen metabolism | 60 | 3 of 5 | ||
| 66794 | methionine metabolism | 57.69 | 15 of 26 | ||
| 66794 | oxidative phosphorylation | 57.14 | 52 of 91 | ||
| 66794 | citric acid cycle | 57.14 | 8 of 14 | ||
| 66794 | cysteine metabolism | 55.56 | 10 of 18 | ||
| 66794 | aspartate and asparagine metabolism | 55.56 | 5 of 9 | ||
| 66794 | proline metabolism | 54.55 | 6 of 11 | ||
| 66794 | metabolism of disaccharids | 54.55 | 6 of 11 | ||
| 66794 | lysine metabolism | 52.38 | 22 of 42 | ||
| 66794 | biotin biosynthesis | 50 | 2 of 4 | ||
| 66794 | phenylmercury acetate degradation | 50 | 1 of 2 | ||
| 66794 | non-pathway related | 50 | 19 of 38 | ||
| 66794 | tryptophan metabolism | 50 | 19 of 38 | ||
| 66794 | Entner Doudoroff pathway | 50 | 5 of 10 | ||
| 66794 | CMP-KDO biosynthesis | 50 | 2 of 4 | ||
| 66794 | suberin monomers biosynthesis | 50 | 1 of 2 | ||
| 66794 | glycine metabolism | 50 | 5 of 10 | ||
| 66794 | cis-vaccenate biosynthesis | 50 | 1 of 2 | ||
| 66794 | glycogen biosynthesis | 50 | 2 of 4 | ||
| 66794 | dolichol and dolichyl phosphate biosynthesis | 50 | 1 of 2 | ||
| 66794 | arginine metabolism | 45.83 | 11 of 24 | ||
| 66794 | d-mannose degradation | 44.44 | 4 of 9 | ||
| 66794 | mevalonate metabolism | 42.86 | 3 of 7 | ||
| 66794 | glutathione metabolism | 42.86 | 6 of 14 | ||
| 66794 | propanol degradation | 42.86 | 3 of 7 | ||
| 66794 | degradation of aromatic, nitrogen containing compounds | 41.67 | 5 of 12 | ||
| 66794 | histidine metabolism | 41.38 | 12 of 29 | ||
| 66794 | metabolism of amino sugars and derivatives | 40 | 2 of 5 | ||
| 66794 | propionate fermentation | 40 | 4 of 10 | ||
| 66794 | 4-hydroxyphenylacetate degradation | 40 | 4 of 10 | ||
| 66794 | degradation of pentoses | 39.29 | 11 of 28 | ||
| 66794 | lipid metabolism | 38.71 | 12 of 31 | ||
| 66794 | isoprenoid biosynthesis | 38.46 | 10 of 26 | ||
| 66794 | dTDPLrhamnose biosynthesis | 37.5 | 3 of 8 | ||
| 66794 | vitamin B6 metabolism | 36.36 | 4 of 11 | ||
| 66794 | tyrosine metabolism | 35.71 | 5 of 14 | ||
| 66794 | (5R)-carbapenem carboxylate biosynthesis | 33.33 | 1 of 3 | ||
| 66794 | octane oxidation | 33.33 | 1 of 3 | ||
| 66794 | lipid A biosynthesis | 33.33 | 3 of 9 | ||
| 66794 | IAA biosynthesis | 33.33 | 1 of 3 | ||
| 66794 | acetyl CoA biosynthesis | 33.33 | 1 of 3 | ||
| 66794 | formaldehyde oxidation | 33.33 | 1 of 3 | ||
| 66794 | pantothenate biosynthesis | 33.33 | 2 of 6 | ||
| 66794 | selenocysteine biosynthesis | 33.33 | 2 of 6 | ||
| 66794 | degradation of hexoses | 33.33 | 6 of 18 | ||
| 66794 | myo-inositol biosynthesis | 30 | 3 of 10 | ||
| 66794 | arachidonic acid metabolism | 27.78 | 5 of 18 | ||
| 66794 | d-xylose degradation | 27.27 | 3 of 11 | ||
| 66794 | androgen and estrogen metabolism | 25 | 4 of 16 | ||
| 66794 | phenol degradation | 25 | 5 of 20 | ||
| 66794 | carnitine metabolism | 25 | 2 of 8 | ||
| 66794 | toluene degradation | 25 | 1 of 4 | ||
| 66794 | cyclohexanol degradation | 25 | 1 of 4 | ||
| 66794 | lactate fermentation | 25 | 1 of 4 | ||
| 66794 | nitrate assimilation | 22.22 | 2 of 9 | ||
| 66794 | polyamine pathway | 21.74 | 5 of 23 |
| @ref | ControlQ | GLY | ERY | DARA | LARA | RIB | DXYL | LXYL | ADO | MDX | GAL | GLU | FRU | MNE | SBE | RHA | DUL | INO | MAN | SOR | MDM | MDG | NAG | AMY | ARB | ESC | SAL | CEL | MAL | LAC | MEL | SAC | TRE | INU | MLZ | RAF | AMD | GLYG | XLT | GEN | TUR | LYX | TAG | DFUC | LFUC | DARL | LARL | GNT | 2KG | 5KG | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 116634 | not determinedn.d. | +/- | - | - | - | - | - | - | - | - | - | +/- | +/- | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | +/- | - | - | - | +/- | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| @ref | URE | ADH (Arg) | ODC | ESC | GLU | FRU | MNE | MAL | LAC | TRE | MAN | RAF | RIB | CEL | Reduction of nitrateNIT | Acetoin production (Voges Proskauer test)VP | beta GAL | L-arginine arylamidaseArgA | PAL | Pyrrolidonyl arylamidasePyrA | NOVO | SAC | NAG | TUR | ARA | beta GUR | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 8957 | - | - | - | - | + | + | - | + | - | + | - | - | - | - | - | - | - | + | - | - | - | +/- | - | - | - | - | |
| 8957 | - | - | - | - | + | + | - | + | - | + | - | - | - | - | - | - | - | + | - | - | - | + | + | +/- | - | - | |
| 8957 | - | - | - | - | + | + | - | + | - | + | - | - | - | - | - | - | - | + | - | - | - | + | + | +/- | + | - | |
| 8957 | - | - | - | - | + | + | - | + | - | + | + | - | + | + | - | + | + | + | - | - | - | + | + | + | + | + | |
| 8957 | - | - | - | - | + | + | - | + | - | + | - | - | - | - | - | - | - | +/- | - | - | - | - | - | - | - | - |
Global distribution of 16S sequence LC383924 (>99% sequence identity) for Staphylococcus from Microbeatlas ![]()
| @ref | Description | Assembly level | INSDC accession | BV-BRC accession | IMG accession | NCBI tax ID | Score | |
|---|---|---|---|---|---|---|---|---|
| 124043 | ASM1602829v1 assembly for Staphylococcus auricularis FDAARGOS_882 | complete | 29379 | 97.69 | ||||
| 66792 | ASM1832394v1 assembly for Staphylococcus auricularis JCM 2421 | complete | 29379 | 96.65 | ||||
| 66792 | 35910_E02 assembly for Staphylococcus auricularis NCTC12101 | complete | 29379 | 93.35 | ||||
| 67770 | ASM150031v1 assembly for Staphylococcus auricularis DSM 20609 | contig | 29379 | 63.89 | ||||
| 67770 | ASM290245v1 assembly for Staphylococcus auricularis NCTC 12101 | scaffold | 29379 | 53.23 |
| @ref | Description | Accession | Length | Database | NCBI tax ID | |
|---|---|---|---|---|---|---|
| 20218 | Staphylococcus auricularis strain DSM 20609 16S ribosomal RNA gene, partial sequence | AY688030 | 464 | 29379 | ||
| 20218 | Staphylococcus auricularis 16S ribosomal RNA gene, partial sequence | L37598 | 1470 | 29379 | ||
| 20218 | Staphylococcus auricularis ATCC 33753 16S rRNA gene, partial sequence | U02911 | 391 | 29379 | ||
| 8957 | Staphylococcus auricularis gene for 16S rRNA, partial sequence, strain: ATCC 33753 (= MAFF 911484) | D83358 | 1475 | 29379 | ||
| 67770 | Staphylococcus auricularis JCM 2421 gene for 16S ribosomal RNA, partial sequence | LC383924 | 1473 | 29379 | ||
| 124043 | S.auricularis gene for 16S ribosomal RNA | Z26889 | 771 | 29379 |
| 8957 | GC-content (mol%)38.8 |
| @ref | Trait | Model | Prediction | Confidence in % | In training data |
|---|---|---|---|---|---|
| 125439 | spore_formation | BacteriaNetⓘ | no | 87.80 | no |
| 125439 | motility | BacteriaNetⓘ | no | 74.00 | no |
| 125439 | gram_stain | BacteriaNetⓘ | positive | 67.80 | no |
| 125439 | oxygen_tolerance | BacteriaNetⓘ | microaerophile | 67.40 | no |
| @ref | Trait | Model | Prediction | Confidence in % | In training data |
|---|---|---|---|---|---|
| 125438 | gram-positive | gram-positiveⓘ | yes | 89.19 | no |
| 125438 | anaerobic | anaerobicⓘ | no | 97.27 | yes |
| 125438 | aerobic | aerobicⓘ | yes | 67.99 | yes |
| 125438 | spore-forming | spore-formingⓘ | no | 74.03 | no |
| 125438 | thermophilic | thermophileⓘ | no | 95.98 | yes |
| 125438 | flagellated | motile2+ⓘ | no | 81.12 | no |
| Topic | Title | Authors | Journal | DOI | Year | |
|---|---|---|---|---|---|---|
| Immunoinformatics and Biophysics Approaches to Design a Novel Multi-Epitopes Vaccine Design against Staphylococcus auricularis. | Attar R, Alatawi EA, Aba Alkhayl FF, Alharbi KN, Allemailem KS, Almatroudi A. | Vaccines (Basel) | 10.3390/vaccines10050637 | 2022 | ||
| Antioxidant, Cytotoxic, and Antimicrobial Activities of Glycyrrhiza glabra L., Paeonia lactiflora Pall., and Eriobotrya japonica (Thunb.) Lindl. Extracts. | Zhou JX, Braun MS, Wetterauer P, Wetterauer B, Wink M. | Medicines (Basel) | 10.3390/medicines6020043 | 2019 | ||
| Pathogenicity | Recombinant AfusinC, an anionic fungal CSalphabeta defensin from Aspergillus fumigatus, exhibits antimicrobial activity against gram-positive bacteria. | Contreras G, Braun MS, Schafer H, Wink M. | PLoS One | 10.1371/journal.pone.0205509 | 2018 | |
| Rapid Detection of mecA and femA Genes by Loop-Mediated Isothermal Amplification in a Microfluidic System for Discrimination of Different Staphylococcal Species and Prediction of Methicillin Resistance. | Meng X, Zhang G, Sun B, Liu S, Wang Y, Gao M, Fan Y, Zhang G, Shi G, Kang X. | Front Microbiol | 10.3389/fmicb.2020.01487 | 2020 | ||
| Enzymology | Development of a multiplex real-time PCR assay for the simultaneous detection of four bacterial pathogens causing pneumonia. | Lim HJ, Kang ER, Park MY, Kim BK, Kim MJ, Jung S, Roh KH, Sung N, Yang JH, Lee MW, Lee SH, Yang YJ. | PLoS One | 10.1371/journal.pone.0253402 | 2021 | |
| Novel Peptide from Commensal Staphylococcus simulans Blocks Methicillin-Resistant Staphylococcus aureus Quorum Sensing and Protects Host Skin from Damage. | Brown MM, Kwiecinski JM, Cruz LM, Shahbandi A, Todd DA, Cech NB, Horswill AR. | Antimicrob Agents Chemother | 10.1128/aac.00172-20 | 2020 | ||
| Enzymology | Performance of SaSelect, a chromogenic medium for detection of staphylococci in clinical specimens. | Hirvonen JJ, Kerttula AM, Kaukoranta SS. | J Clin Microbiol | 10.1128/jcm.03129-13 | 2014 | |
| Phylogeny | Comparative study using various methods for identification of Staphylococcus species in clinical specimens. | Layer F, Ghebremedhin B, Moder KA, Konig W, Konig B. | J Clin Microbiol | 10.1128/jcm.00226-06 | 2006 | |
| Phylogeny | Evaluation of a triplex PCR assay to discriminate Staphylococcus aureus from coagulase-negative Staphylococci and determine methicillin resistance from blood cultures. | Maes N, Magdalena J, Rottiers S, De Gheldre Y, Struelens MJ. | J Clin Microbiol | 10.1128/jcm.40.4.1514-1517.2002 | 2002 | |
| Phylogeny | Glyceraldehyde-3-phosphate dehydrogenase-encoding gene as a useful taxonomic tool for Staphylococcus spp. | Yugueros J, Temprano A, Berzal B, Sanchez M, Hernanz C, Luengo JM, Naharro G. | J Clin Microbiol | 10.1128/jcm.38.12.4351-4355.2000 | 2000 | |
| Pathogenicity | Real-time PCR assay for detection of fluoroquinolone resistance associated with grlA mutations in Staphylococcus aureus. | Lapierre P, Huletsky A, Fortin V, Picard FJ, Roy PH, Ouellette M, Bergeron MG. | J Clin Microbiol | 10.1128/jcm.41.7.3246-3251.2003 | 2003 | |
| Phylogeny | Development of a PCR assay for identification of staphylococci at genus and species levels. | Martineau F, Picard FJ, Ke D, Paradis S, Roy PH, Ouellette M, Bergeron MG. | J Clin Microbiol | 10.1128/jcm.39.7.2541-2547.2001 | 2001 | |
| Enzymology | Species-specific and ubiquitous-DNA-based assays for rapid identification of Staphylococcus aureus. | Martineau F, Picard FJ, Roy PH, Ouellette M, Bergeron MG. | J Clin Microbiol | 10.1128/jcm.36.3.618-623.1998 | 1998 | |
| Phylogeny | Rapid and accurate species-level identification of coagulase-negative staphylococci by using the sodA gene as a target. | Poyart C, Quesne G, Boumaila C, Trieu-Cuot P. | J Clin Microbiol | 10.1128/jcm.39.12.4296-4301.2001 | 2001 | |
| Phylogeny | Evaluation of Staph ID 32 system and Staph-Zym system for identification of coagulase-negative staphylococci. | Renneberg J, Rieneck K, Gutschik E. | J Clin Microbiol | 10.1128/jcm.33.5.1150-1153.1995 | 1995 | |
| Phylogeny | Identification of Staphylococcus species and subspecies by the chaperonin 60 gene identification method and reverse checkerboard hybridization. | Goh SH, Santucci Z, Kloos WE, Faltyn M, George CG, Driedger D, Hemmingsen SM. | J Clin Microbiol | 10.1128/jcm.35.12.3116-3121.1997 | 1997 | |
| PCR primers and probes for the 16S rRNA gene of most species of pathogenic bacteria, including bacteria found in cerebrospinal fluid. | Greisen K, Loeffelholz M, Purohit A, Leong D. | J Clin Microbiol | 10.1128/jcm.32.2.335-351.1994 | 1994 | ||
| Draft Genome Sequences of 64 Type Strains of 50 Species and 25 Subspecies of the Genus Staphylococcus Rosenbach 1884. | Cole K, Foster D, Russell JE, Golubchik T, Llewelyn M, Wilson DJ, Crook D, Paul J, Modernising Medical Microbiology Consortium. | Microbiol Resour Announc | 10.1128/mra.00062-19 | 2019 | ||
| Enzymology | Multiplex real-time PCR assay for detection of methicillin-resistant Staphylococcus aureus (MRSA) strains suitable in regions of high MRSA endemicity. | Kim JU, Cha CH, An HK, Lee HJ, Kim MN. | J Clin Microbiol | 10.1128/jcm.02495-12 | 2013 |
| #8957 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 20609 |
| #20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 ) |
| #20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 ) |
| #34366 | ; Curators of the CIP; |
| #66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) . |
| #66794 | Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg: BRENDA, the ELIXIR core data resource in 2021: new developments and updates. Nucleic Acids Res. 49: D498 - D508 2020 ( DOI 10.1093/nar/gkaa1025 , PubMed 33211880 ) |
| #67770 | Japan Collection of Microorganism (JCM) ; Curators of the JCM; |
| #68371 | Automatically annotated from API 50CH acid . |
| #68375 | Automatically annotated from API ID32STA . |
| #68382 | Automatically annotated from API zym . |
| #69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta . |
| #116634 | Collection of Institut Pasteur ; Curators of the CIP; CIP 103587 |
| #124043 | Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy . |
| #125438 | Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 ) |
| #125439 | Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 . |
| #126262 | A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 ) |
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BacDive in 2025: the core database for prokaryotic strain data