Actinotignum schaalii B 5329 is a microaerophile, Gram-positive, rod-shaped bacterium that was isolated from human blood, chronic pyelonephritis, 64-yr-old man.
Gram-positive rod-shaped microaerophile genome sequence 16S sequence Bacteria| @ref 20215 |
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| Domain Bacteria |
| Phylum Actinomycetota |
| Class Actinomycetes |
| Order Actinomycetales |
| Family Actinomycetaceae |
| Genus Actinotignum |
| Species Actinotignum schaalii |
| Full scientific name Actinotignum schaalii (Lawson et al. 1997) Yassin et al. 2015 |
| Synonyms (1) |
| @ref | Name | Growth | Medium link | Composition | |
|---|---|---|---|---|---|
| 5990 | BHI/2 MEDIUM (DSMZ Medium 217) | Medium recipe at MediaDive | Name: BHI/2 MEDIUM (DSMZ Medium 217) Composition: Brain heart infusion 37.0 g/l Casein hydrolysate 10.0 g/l Glucose 5.0 g/l Yeast extract 5.0 g/l Distilled water | ||
| 5990 | COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) | Medium recipe at MediaDive | Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base | ||
| 23353 | 5% horse blood agar | ||||
| 32828 | MEDIUM 10 - Chocolate medium for Actinobacillus pleuropneumoniae, Capnocytophaga cynodegmi, Haemophilus and Neisseria | Distilled water make up to (1000.000 ml);Columbia agar (39.000 g);Horseblood (100.000 ml);PolyVitex mischung (10.000 ml) | |||
| 122503 | CIP Medium 10 | Medium recipe at CIP |
| 23353 | TypeA5alpha L-Lys-L-Lys-D-Glu |
| @ref | Chebi-ID | Metabolite | Utilization activity | Kind of utilization tested | |
|---|---|---|---|---|---|
| 68381 | 40585 ChEBI | alpha-cyclodextrin | - | builds acid from | from API rID32STR |
| 68381 | 29016 ChEBI | arginine | - | hydrolysis | from API rID32STR |
| 122503 | 16947 ChEBI | citrate | - | carbon source | |
| 23353 | 23456 ChEBI | cyclodextrin | - | builds acid from | |
| 23353 | 18333 ChEBI | D-arabitol | - | builds acid from | |
| 68381 | 18333 ChEBI | D-arabitol | - | builds acid from | from API rID32STR |
| 23354 | 17634 ChEBI | D-glucose | + | builds acid from | |
| 68381 | 16899 ChEBI | D-mannitol | - | builds acid from | from API rID32STR |
| 68381 | 16988 ChEBI | D-ribose | + | builds acid from | from API rID32STR |
| 23353 | 16443 ChEBI | D-tagatose | - | builds acid from | |
| 68381 | 16443 ChEBI | D-tagatose | - | builds acid from | from API rID32STR |
| 23353 | 65327 ChEBI | D-xylose | + | builds acid from | |
| 23354 | 65327 ChEBI | D-xylose | + | builds acid from | |
| 23353 | 4853 ChEBI | esculin | - | hydrolysis | |
| 23354 | 4853 ChEBI | esculin | - | hydrolysis | |
| 122503 | 4853 ChEBI | esculin | - | hydrolysis | |
| 23353 | 5291 ChEBI | gelatin | - | hydrolysis | |
| 23354 | 5291 ChEBI | gelatin | - | hydrolysis | |
| 23353 | 17234 ChEBI | glucose | + | builds acid from | |
| 23353 | 28087 ChEBI | glycogen | - | builds acid from | |
| 23354 | 28087 ChEBI | glycogen | - | builds acid from | |
| 68381 | 28087 ChEBI | glycogen | - | builds acid from | from API rID32STR |
| 23353 | 606565 ChEBI | hippurate | + | hydrolysis | |
| 23354 | 606565 ChEBI | hippurate | + | hydrolysis | |
| 68381 | 606565 ChEBI | hippurate | - | hydrolysis | from API rID32STR |
| 122503 | 606565 ChEBI | hippurate | + | hydrolysis | |
| 23354 | 15443 ChEBI | inulin | - | builds acid from | |
| 23354 | 30849 ChEBI | L-arabinose | + | builds acid from | |
| 23353 | 30849 ChEBI | L-arabinose | +/- | builds acid from | |
| 68381 | 30849 ChEBI | L-arabinose | + | builds acid from | from API rID32STR |
| 23353 | 17716 ChEBI | lactose | - | builds acid from | |
| 23354 | 17716 ChEBI | lactose | - | builds acid from | |
| 68381 | 17716 ChEBI | lactose | - | builds acid from | from API rID32STR |
| 23353 | 17306 ChEBI | maltose | + | builds acid from | |
| 23354 | 17306 ChEBI | maltose | + | builds acid from | |
| 68381 | 17306 ChEBI | maltose | + | builds acid from | from API rID32STR |
| 23353 | 29864 ChEBI | mannitol | - | builds acid from | |
| 23354 | 29864 ChEBI | mannitol | - | builds acid from | |
| 23353 | 37684 ChEBI | mannose | +/- | builds acid from | |
| 23353 | 6731 ChEBI | melezitose | - | builds acid from | |
| 68381 | 6731 ChEBI | melezitose | - | builds acid from | from API rID32STR |
| 23353 | 28053 ChEBI | melibiose | - | builds acid from | |
| 68381 | 28053 ChEBI | melibiose | - | builds acid from | from API rID32STR |
| 23353 | 320055 ChEBI | methyl beta-D-glucopyranoside | - | builds acid from | |
| 68381 | 320055 ChEBI | methyl beta-D-glucopyranoside | - | builds acid from | from API rID32STR |
| 23353 | 506227 ChEBI | N-acetylglucosamine | - | builds acid from | |
| 23353 | 17632 ChEBI | nitrate | - | reduction | |
| 122503 | 17632 ChEBI | nitrate | - | reduction | |
| 122503 | 17632 ChEBI | nitrate | + | respiration | |
| 122503 | 16301 ChEBI | nitrite | - | reduction | |
| 23353 | 27941 ChEBI | pullulan | - | builds acid from | |
| 68381 | 27941 ChEBI | pullulan | - | builds acid from | from API rID32STR |
| 23353 | 16634 ChEBI | raffinose | - | builds acid from | |
| 23354 | 16634 ChEBI | raffinose | - | builds acid from | |
| 68381 | 16634 ChEBI | raffinose | - | builds acid from | from API rID32STR |
| 23353 | 33942 ChEBI | ribose | + | builds acid from | |
| 23354 | 33942 ChEBI | ribose | + | builds acid from | |
| 23353 | 30911 ChEBI | sorbitol | - | builds acid from | |
| 23354 | 30911 ChEBI | sorbitol | - | builds acid from | |
| 68381 | 30911 ChEBI | sorbitol | - | builds acid from | from API rID32STR |
| 23354 | 28017 ChEBI | starch | - | builds acid from | |
| 23353 | 28017 ChEBI | starch | +/- | builds acid from | |
| 23354 | 17992 ChEBI | sucrose | + | builds acid from | |
| 23353 | 17992 ChEBI | sucrose | +/- | builds acid from | |
| 68381 | 17992 ChEBI | sucrose | + | builds acid from | from API rID32STR |
| 23354 | 27082 ChEBI | trehalose | - | builds acid from | |
| 23353 | 27082 ChEBI | trehalose | +/- | builds acid from | |
| 68381 | 27082 ChEBI | trehalose | + | builds acid from | from API rID32STR |
| 23353 | 16199 ChEBI | urea | - | hydrolysis | |
| 68381 | 16199 ChEBI | urea | - | hydrolysis | from API rID32STR |
| @ref | Metabolite | Is sensitive | Is resistant | |
|---|---|---|---|---|
| 122503 | 0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate) |
| @ref | Value | Activity | Ec | |
|---|---|---|---|---|
| 68382 | acid phosphatase | - | 3.1.3.2 | from API zym |
| 68381 | Alanyl-Phenylalanyl-Proline arylamidase | + | from API rID32STR | |
| 122503 | alcohol dehydrogenase | - | 1.1.1.1 | |
| 23353 | alkaline phosphatase | - | 3.1.3.1 | |
| 68382 | alkaline phosphatase | - | 3.1.3.1 | from API zym |
| 68381 | alkaline phosphatase | - | 3.1.3.1 | from API rID32STR |
| 23354 | alpha-chymotrypsin | - | 3.4.21.1 | |
| 68382 | alpha-chymotrypsin | - | 3.4.21.1 | from API zym |
| 23354 | alpha-fucosidase | - | 3.2.1.51 | |
| 68382 | alpha-fucosidase | - | 3.2.1.51 | from API zym |
| 23353 | alpha-galactosidase | - | 3.2.1.22 | |
| 23354 | alpha-galactosidase | - | 3.2.1.22 | |
| 68382 | alpha-galactosidase | - | 3.2.1.22 | from API zym |
| 68381 | alpha-galactosidase | + | 3.2.1.22 | from API rID32STR |
| 68382 | alpha-glucosidase | + | 3.2.1.20 | from API zym |
| 68382 | alpha-mannosidase | - | 3.2.1.24 | from API zym |
| 23353 | arginine dihydrolase | - | 3.5.3.6 | |
| 23354 | arginine dihydrolase | - | 3.5.3.6 | |
| 68381 | arginine dihydrolase | - | 3.5.3.6 | from API rID32STR |
| 23353 | beta-galactosidase | - | 3.2.1.23 | |
| 23354 | beta-galactosidase | - | 3.2.1.23 | |
| 68382 | beta-galactosidase | - | 3.2.1.23 | from API zym |
| 122503 | beta-galactosidase | - | 3.2.1.23 | |
| 68381 | beta-galactosidase | - | 3.2.1.23 | from API rID32STR |
| 68382 | beta-glucosidase | - | 3.2.1.21 | from API zym |
| 68381 | beta-glucosidase | - | 3.2.1.21 | from API rID32STR |
| 23353 | beta-glucuronidase | - | 3.2.1.31 | |
| 68381 | beta-glucuronidase | - | 3.2.1.31 | from API rID32STR |
| 68382 | beta-glucuronidase | - | 3.2.1.31 | from API zym |
| 23353 | beta-mannosidase | - | 3.2.1.25 | |
| 68381 | beta-mannosidase | - | 3.2.1.25 | from API rID32STR |
| 23354 | catalase | - | 1.11.1.6 | |
| 122503 | catalase | - | 1.11.1.6 | |
| 23354 | cystine arylamidase | - | 3.4.11.3 | |
| 68382 | cystine arylamidase | + | 3.4.11.3 | from API zym |
| 23354 | cytochrome oxidase | - | 1.9.3.1 | |
| 23354 | esterase (C 4) | - | ||
| 68382 | esterase (C 4) | - | from API zym | |
| 68382 | esterase lipase (C 8) | - | from API zym | |
| 122503 | gamma-glutamyltransferase | + | 2.3.2.2 | |
| 122503 | gelatinase | - | ||
| 68381 | glycyl tryptophan arylamidase | - | from API rID32STR | |
| 68382 | leucine arylamidase | + | 3.4.11.1 | from API zym |
| 23354 | lipase (C 14) | - | ||
| 68382 | lipase (C 14) | - | from API zym | |
| 122503 | lysine decarboxylase | - | 4.1.1.18 | |
| 68382 | N-acetyl-beta-glucosaminidase | - | 3.2.1.52 | from API zym |
| 68381 | N-acetyl-beta-glucosaminidase | - | 3.2.1.52 | from API rID32STR |
| 68382 | naphthol-AS-BI-phosphohydrolase | + | from API zym | |
| 122503 | ornithine decarboxylase | - | 4.1.1.17 | |
| 122503 | oxidase | - | ||
| 122503 | phenylalanine ammonia-lyase | - | 4.3.1.24 | |
| 23353 | pyrazinamidase | +/- | 3.5.1.B15 | |
| 23354 | pyrazinamidase | - | 3.5.1.B15 | |
| 23353 | pyrrolidonyl arylamidase | +/- | 3.4.19.3 | |
| 68381 | pyrrolidonyl arylamidase | + | 3.4.19.3 | from API rID32STR |
| 23354 | trypsin | - | 3.4.21.4 | |
| 68382 | trypsin | - | 3.4.21.4 | from API zym |
| 122503 | tryptophan deaminase | - | ||
| 122503 | urease | - | 3.5.1.5 | |
| 68381 | urease | - | 3.5.1.5 | from API rID32STR |
| 23354 | valine arylamidase | - | ||
| 68382 | valine arylamidase | - | from API zym |
| @ref | ADH (Arg) | beta GLU | beta GAR | beta GUR | alpha GAL | PAL | RIB | MAN | SOR | LAC | TRE | RAF | SAC | LARA | DARL | Acid from alpha-cyclodextrinCDEX | Acetoin production (Voges Proskauer test)VP | Alanyl-Phenylalanyl-Proline arylamidaseAPPA | beta GAL | Pyrrolidonyl arylamidasePyrA | N-Acetyl-glucosaminidasebeta NAG | Glycyl-tryptophan arylamidaseGTA | HIP | GLYG | PUL | MAL | MEL | MLZ | Acidification of methyl beta-D-glucopyranosideMbeta DG | TAG | beta MAN | URE | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 5990 | - | - | - | - | + | - | + | - | - | - | + | - | + | + | - | - | + | + | - | + | - | - | - | - | - | + | - | - | - | - | - | - |
| Cat1 | Cat2 | Cat3 | |
|---|---|---|---|
| #Infection | #Disease | - | |
| #Host | #Human | #Male | |
| #Host Body-Site | #Urogenital tract | #Kidney | |
| #Host Body Product | #Fluids | #Blood |
| @ref | Sample type | Sampling date | Geographic location | Country | Country ISO 3 Code | Continent | Isolation date | |
|---|---|---|---|---|---|---|---|---|
| 5990 | human blood, chronic pyelonephritis, 64-yr-old man | Sweden | SWE | Europe | ||||
| 48774 | Human blood,chronic pyelonephritis,64-yr-old man | 1990-10-30 | Kristianstad | Sweden | SWE | Europe | ||
| 122503 | Human, Blood | Kristianstad | Sweden | SWE | Europe | 1990 |
Global distribution of 16S sequence Y12329 (>99% sequence identity) for Actinotignum schaalii from Microbeatlas ![]()
| @ref | Description | Assembly level | INSDC accession | BV-BRC accession | IMG accession | NCBI tax ID | Score | |
|---|---|---|---|---|---|---|---|---|
| 124043 | ASM3455533v1 assembly for Actinotignum schaalii CCUG 27420 | complete | 59505 | 98.91 | ||||
| 66792 | ASM72460v1 assembly for Actinotignum schaalii CCUG 27420 | complete | 59505 | 96.58 | ||||
| 66792 | ASM42920v1 assembly for Actinotignum schaalii DSM 15541 | scaffold | 1120932 | 73.56 |
| @ref | GC-content (mol%) | Method | |
|---|---|---|---|
| 23353 | 57.0 | Thermal denaturation, fluorometry |
| @ref | Trait | Model | Prediction | Confidence in % | In training data |
|---|---|---|---|---|---|
| 125439 | oxygen_tolerance | BacteriaNetⓘ | anaerobe | 91.10 | no |
| 125439 | gram_stain | BacteriaNetⓘ | positive | 85.10 | no |
| 125439 | motility | BacteriaNetⓘ | no | 88.60 | no |
| 125439 | spore_formation | BacteriaNetⓘ | no | 71.60 | no |
| @ref | Trait | Model | Prediction | Confidence in % | In training data |
|---|---|---|---|---|---|
| 125438 | gram-positive | gram-positiveⓘ | yes | 90.35 | yes |
| 125438 | anaerobic | anaerobicⓘ | no | 55.26 | no |
| 125438 | aerobic | aerobicⓘ | no | 87.22 | yes |
| 125438 | spore-forming | spore-formingⓘ | no | 89.74 | no |
| 125438 | thermophilic | thermophileⓘ | no | 94.68 | no |
| 125438 | flagellated | motile2+ⓘ | no | 93.38 | yes |
| Topic | Title | Authors | Journal | DOI | Year | |
|---|---|---|---|---|---|---|
| Metabolism | Actinobaculum massiliense Proteome Profiled in Polymicrobial Urethral Catheter Biofilms. | Yu Y, Tsitrin T, Singh H, Doerfert SN, Sizova MV, Epstein SS, Pieper R. | Proteomes | 10.3390/proteomes6040052 | 2018 | |
| A Rare Case of Sacrococcygeal Pilonidal Abscess Caused by Coinfection of Actinomyces Turicensis and Actinotignum Schaalii: A Case Report. | Ye J, Zhao S, Xie Y, Mao Q, Chen L, Shen B, Xu Y. | Infect Drug Resist | 10.2147/idr.s550162 | 2025 | ||
| An invasive macrolide/lincosamide-resistant Corynebacterium mucifaciens isolate from a patient with diabetic gangrene: Colonies with mucoid appearance harboring a fragment of erm(X). | Ebihara T, Baba K, Yoshida H, Hirose Y, Goto M, Takahashi T. | Jpn J Infect Dis | 10.7883/yoken.jjid.2025.034 | 2025 | ||
| Bacterial Synergism in Breast Necrotizing Fasciitis: A Case Report on Diagnostic Dilemmas, Therapeutic Challenges, and Reconstructive Management. | Essid L, See LA, Tarris G, Zwetyenga N, Moris V. | Case Rep Infect Dis | 10.1155/crdi/3731779 | 2025 | ||
| Hyperammonemia and Impaired Consciousness Caused by Non-Urease-Producing Actinotignum schaalii in Obstructive Urinary Tract Infection. | Nakamura A, Odo M. | Cureus | 10.7759/cureus.76167 | 2024 | ||
| One case of Actinotignum schaalii-induced repeated infections at periumbilical scar accompanied by abscess formation and literature review. | Li C, Yang L, Xu M, Zhou T, He J, Yin Y, Liu Y. | BMC Infect Dis | 10.1186/s12879-024-10329-9 | 2024 | ||
| The EFLM European Urinalysis Guideline 2023. | Kouri TT, Hofmann W, Falbo R, Oyaert M, Schubert S, Gertsen JB, Merens A, Pestel-Caron M, Task and Finish Group for Urinalysis (TFG-U), European Federation of Clinical Chemistry and Laboratory Medicine (EFLM). | Clin Chem Lab Med | 10.1515/cclm-2024-0070 | 2024 | ||
| Actinotignum schaalii pyelonephritis in a young adult with ureteric calculus: case report. | Jayaweera JAAS, Ranasinghe G. | Germs | 10.18683/germs.2024.1422 | 2024 | ||
| [A New Case of Fournier's Gangrene Caused by Actinotignum schaalii]. | Tutan H, Kutsal C, Gul O, Tanriverdi ES, Baris A, Bulut ME, Aktas E. | Mikrobiyol Bul | 10.5578/mb.20249908 | 2024 | ||
| Phylogeny | Actinotignum schaalii infection: Challenges in diagnosis and treatment. | Sahuquillo-Arce JM, Suarez-Urquiza P, Hernandez-Cabezas A, Tofan L, Chouman-Arcas R, Garcia-Hita M, Sabalza-Baztan O, Selles-Sanchez A, Lozano-Rodriguez N, Marti-Cunat J, Lopez-Hontangas JL. | Heliyon | 10.1016/j.heliyon.2024.e28589 | 2024 | |
| Phylogeny | The Role of Urinary Microbiome Analysis in the Diagnostic Approach and Management of Urinary Incontinence: A Systematic Review. | Shaker P, Roshani Z, Timajchi E, Sharifi Z, Nikzadfar Goli S, Broumand B, Shafiee MA. | Life (Basel) | 10.3390/life15020309 | 2025 | |
| Phylogeny | Characterizing Actinotignum schaalii infections in a large Canadian healthcare region. | Mah J, Lieu A, Somayaji R, Church D. | Future Microbiol | 10.2217/fmb-2022-0049 | 2022 | |
| Acute Pyelonephritis with Bacteremia in an 89-Year-Old Woman Caused by Two Slow-Growing Bacteria: Aerococcus urinae and Actinotignum schaalii. | Lotte L, Durand C, Chevalier A, Gaudart A, Cheddadi Y, Ruimy R, Lotte R. | Microorganisms | 10.3390/microorganisms11122908 | 2023 | ||
| Spontaneous dislodgment of a peritoneal dialysis catheter inserted using the Seldinger technique: A case report. | Wu RY, Tan Y, Li H, Zou YR, Chen XL, Chen J. | World J Clin Cases | 10.12998/wjcc.v12.i21.4789 | 2024 | ||
| [Actinotignum schaalii: Report of two cases of bacteremia in Argentina]. | Gallo R, Tamborini AL, Di Bella H, Scarone N, Morante M, Prieto M, Casabona LM. | Rev Argent Microbiol | 10.1016/j.ram.2021.10.001 | 2022 | ||
| Pathogenicity | Unraveling the Skin Microbiome in Hidradenitis Suppurativa: Implications for Treatment and Disease Progression. | Cucu CI, Giurcaneanu C, Mihai MM, Andronic T, Ancuta I, Popa MI, Macovei IS, Popa LG. | J Clin Med | 10.3390/jcm14072424 | 2025 | |
| Clinical characteristics of Actinotignum schaalii bacteremia in a Japanese tertiary hospital. | Nakaoka Y, Kitagawa H, Kitano H, Koba Y, Hara T, Nagaoka R, Tadera K, Kashiyama S, Nomura T, Omori K, Shigemoto N, Yokozaki M, Ohge H. | Anaerobe | 10.1016/j.anaerobe.2022.102513 | 2022 | ||
| Infectious hematogenous lumbar spondylodiscitis caused by Actinotignum schaalii in a 74-year-old man: A case report. | Ropke EF, Chwoika M, Treber T, Meyer J, Paasch C. | Int J Surg Case Rep | 10.1016/j.ijscr.2022.107453 | 2022 | ||
| Actinotignum schaalii infection - a case series from a tertiary hospital in Greece. | Ioannou P, Karakonstantis S, Tavlas E, Kontopodis N, Maraki S, Chamilos G, Kofteridis DP. | Germs | 10.18683/germs.2022.1343 | 2022 | ||
| Actinotignum schaalii Can Be an Uropathogen of "Culture-Negative" Febrile Urinary Tract Infections in Children with Urinary Tract Abnormalities. | Washio M, Harada N, Nishima D, Takemoto M. | Case Rep Nephrol Dial | 10.1159/000526398 | 2022 | ||
| A 2-Year Retrospective Case Series on Isolates of the Emerging Pathogen Actinotignum schaalii from a Canadian Tertiary Care Hospital. | Kakodkar P, Hamula C. | Microorganisms | 10.3390/microorganisms10081608 | 2022 | ||
| Phylogeny | Microbiological Characterization of Actinotignum schaalii Strains Causing Invasive Infections during a Multiyear Period in a Large Canadian Health Care Region. | Lieu A, Mah J, Peirano G, Somayaji R, Church D. | Microbiol Spectr | 10.1128/spectrum.03442-22 | 2022 | |
| Genetics | Limitations of MALDI-TOF MS in identifying anaerobic bacteremia: challenges in polymicrobial infections and the role of whole-genome sequencing. | Hosoda T, Suzuki M, Matsuno T, Matsui K, Ohyama K, Doi Y. | Microbiol Spectr | 10.1128/spectrum.01014-25 | 2025 | |
| In-depth Microbiological Characterization of Urine From Subjects With Type 2 Diabetes. | Calvigioni M, Biancalana E, Mazzantini D, Celandroni F, Rossi C, Mengozzi A, Ghelardi E, Solini A. | J Clin Endocrinol Metab | 10.1210/clinem/dgae389 | 2024 | ||
| Laparoscopic multi-bipolar radiofrequency ablation of fibroids: impact on quality of life. | Niddam R, Netter A, Courbiere B, Agostini A, Miquel L. | Arch Gynecol Obstet | 10.1007/s00404-025-08082-8 | 2025 | ||
| Fournier's Gangrene Mimicking Acute Epididymo-Orchitis in an Undiagnosed Diabetic Patient. | Soares Dionisio A, Duarte J, Guia Lopes ML, Camacho C. | Cureus | 10.7759/cureus.32588 | 2022 | ||
| Case Report: Emphysematous Pyelonephritis With a Congenital Giant Ureterocele. | Kitano H, Hieda K, Kitagawa H, Nakaoka Y, Koba Y, Ota K, Shigemoto N, Hayashi T, Kashiyama S, Teishima J, Shime N, Ohge H, Hinata N. | Front Pediatr | 10.3389/fped.2021.775468 | 2021 | ||
| Actinotignum schaalii Caught for the Second Time in Fournier's Gangrene! | Sahra S, Jahangir A, Kandlakunta H, Glaser A. | Cureus | 10.7759/cureus.13288 | 2021 | ||
| Emerging and Fastidious Uropathogens Were Detected by M-PCR with Similar Prevalence and Cell Density in Catheter and Midstream Voided Urine Indicating the Importance of These Microbes in Causing UTIs. | Wang D, Haley E, Luke N, Mathur M, Festa RA, Zhao X, Anderson LA, Allison JL, Stebbins KL, Diaz MJ, Baunoch D. | Infect Drug Resist | 10.2147/idr.s429990 | 2023 | ||
| Cultivation | Improving the diagnosis of urinary tract infections by the use of enriched media and a 48-hour incubation period. | Benjumea C, Navarro F, Alonso-Tarres C. | J Med Microbiol | 10.1099/jmm.0.001846 | 2024 | |
| Presumed Septic Shock Caused by Actinotignum schaalii Bacteremia. | Hashimoto T, Ando M, Komiya K, Usagawa Y, Yamasue M, Umeki K, Nureki SI, Hiramatsu K, Kadota JI. | Intern Med | 10.2169/internalmedicine.4351-19 | 2021 | ||
| Actinotignum schaalii Abscess in a Patient with Common Variable Immunodeficiency. | Panganiban CM, Gupta S. | Pathogens | 10.3390/pathogens9060494 | 2020 | ||
| Antimicrobial Susceptibility Profile of Rare Anaerobic Bacteria. | Wolf LJ, Stingu CS. | Antibiotics (Basel) | 10.3390/antibiotics12010063 | 2022 | ||
| A case report of necrotizing fasciitis with growth of Actinomyces europaeus and Actinotignum schaalii. | Kus NJ, Kim BJ, Ross HM. | J Surg Case Rep | 10.1093/jscr/rjz286 | 2019 | ||
| Empirical Antibiotic Therapy in Chronic Endometritis With and Without Focal Lesions: A Prospective Cohort Study. | Gawron I, Zaborowska L, Derbisz K, Ludwin I, Ludwin A. | Med Sci (Basel) | 10.3390/medsci13040278 | 2025 | ||
| Enzymology | Native aortic endocarditis due to an unusual pathogen: Actinotignum schaalii. | Loiez C, Pilato R, Mambie A, Hendricx S, Faure K, Wallet F. | APMIS | 10.1111/apm.12803 | 2018 | |
| Emerging Presence of Culturable Microorganisms in Clinical Samples of the Genitourinary System: Systematic Review and Experience in Specialized Care of a Regional Hospital. | Rosales-Castillo A, Jimenez-Guerra G, Ruiz-Gomez L, Exposito-Ruiz M, Navarro-Mari JM, Gutierrez-Fernandez J. | J Clin Med | 10.3390/jcm11051348 | 2022 | ||
| Phylogeny | Cervicovaginal microbial features predict Chlamydia trachomatis spread to the upper genital tract of infected women. | Jeong S, Tollison T, Brochu H, Chou H, Huntress I, Yount KS, Zheng X, Darville T, O'Connell CM, Peng X. | Infect Immun | 10.1128/iai.00057-25 | 2025 | |
| A rare case of abdominal wall necrotizing fasciitis caused by Actinomyces europaeus-a novel pathogen. | Allen N, James G, Jain Y. | J Surg Case Rep | 10.1093/jscr/rjab533 | 2021 | ||
| Emerging pathogens Aerococcus urinae and Aerococcus sanguinicola from a Canadian tertiary care hospital. | Kakodkar P, Scott J, Tariq J, Du L, Wu F, Mehta N, Hamula C. | Future Microbiol | 10.1080/17460913.2024.2383503 | 2024 | ||
| Comparing Prescribing Behaviors and Clinician Experiences Between Multiplex PCR/Pooled Antibiotic Susceptibility Testing and Standard Urine Culture in Complicated UTI Cases. | Haley E, Luke N, Korman H, Rao GS, Baunoch D, Chen X, Havrilla J, Mathur M. | J Clin Med | 10.3390/jcm13237453 | 2024 | ||
| A case report: Actinobaculum suis infection associated with formation of pyogranuloma, epididymitis and azoospermia in a boar. | Arnold M, Richard O, Gurtner C, Nathues H, Grahofer A. | BMC Vet Res | 10.1186/s12917-020-02680-1 | 2021 | ||
| Enzymology | Actinotignum schaalii subcutaneous abscesses in a patient with hidradenitis suppurativa: Case report and literature review. | Maraki S, Evangelou G, Stafylaki D, Scoulica E. | Anaerobe | 10.1016/j.anaerobe.2016.11.010 | 2017 | |
| Preanalytical, Analytical and Postanalytical Analyses on Corynebacterium spp. and Actinomycetaceae in Urine Samples of Patients with Suspected Urinary Tract Infection-A Hypothesis-Forming Observational Study. | Frickmann H, Schwinge K, Podbielski A, Warnke P. | Diagnostics (Basel) | 10.3390/diagnostics14070746 | 2024 | ||
| Treatment considerations for potential uropathogens detected by precision microbiological testing. | Hemenway AN, Christensen A, Schriever C. | Am J Health Syst Pharm | 10.2146/ajhp180208 | 2018 | ||
| Case report: A rare case of skin abscess caused by coinfection of Actinobaculum schaalii and Actinomyces turicensis. | Liu P, Sun K, Li R, Chen X. | Front Cell Infect Microbiol | 10.3389/fcimb.2024.1378197 | 2024 | ||
| Actinotignum schaalii Infection: A Clandestine Cause of Sterile Pyuria? | Horton LE, Mehta SR, Aganovic L, Fierer J. | Open Forum Infect Dis | 10.1093/ofid/ofy015 | 2018 | ||
| Phylogeny | Propionimicrobium lymphophilum and Actinotignum schaalii bacteraemia: a case report. | Ikeda M, Kobayashi T, Suzuki T, Wakabayashi Y, Ohama Y, Maekawa S, Takahashi S, Homma Y, Tatsuno K, Sato T, Okugawa S, Moriya K, Yotsuyanagi H. | New Microbes New Infect | 10.1016/j.nmni.2017.03.004 | 2017 | |
| Enzymology | The Brief Case: An Unusual Cause of Infective Endocarditis after a Urological Procedure. | Diallo K, Ferrand J, Goehringer F, Selton-Suty C, Folliguet T, Alauzet C, Lozniewski A. | J Clin Microbiol | 10.1128/jcm.01400-17 | 2018 | |
| Enzymology | Actinotignum (formerly Actinobaculum) schaalii: a review of MALDI-TOF for identification of clinical isolates, and a proposed method for presumptive phenotypic identification. | Stevens RP, Taylor PC. | Pathology | 10.1016/j.pathol.2016.03.006 | 2016 | |
| Survey of the infant male urobiome and genomic analysis of Actinotignum spp. | Reasoner SA, Flores V, Van Horn G, Morales G, Peard LM, Abelson B, Manuel C, Lee J, Baker B, Williams T, Schmitz JE, Clayton DB, Hadjifrangiskou M. | NPJ Biofilms Microbiomes | 10.1038/s41522-023-00457-6 | 2023 | ||
| Enzymology | Actinotignum schaalii (formerly Actinobaculum schaalii): a newly recognized pathogen-review of the literature. | Lotte R, Lotte L, Ruimy R. | Clin Microbiol Infect | 10.1016/j.cmi.2015.10.038 | 2016 | |
| Actinotignum schaalii: Relation to Concomitants and Connection to Patients' Conditions in Polymicrobial Biofilms of Urinary Tract Catheters and Urines. | Kotaskova I, Syrovatka V, Obrucova H, Videnska P, Zwinsova B, Hola V, Blastikova E, Ruzicka F, Freiberger T. | Microorganisms | 10.3390/microorganisms9030669 | 2021 | ||
| Enzymology | A validation of the Danish microbiology database (MiBa) and incidence rate of Actinotignum schaalii (Actinobaculum schaalii) bacteraemia in Denmark. | Bank S, Soby KM, Kristensen LH, Voldstedlund M, Prag J. | Clin Microbiol Infect | 10.1016/j.cmi.2015.08.006 | 2015 | |
| Resistance to first-line antibiotic therapy among patients with uncomplicated acute cystitis in Melbourne, Australia: prevalence, predictors and clinical impact. | Curtis SJ, Kwong JC, Chaung YL, Mazza D, Walsh CJ, Chua KY, Stewardson AJ. | JAC Antimicrob Resist | 10.1093/jacamr/dlad145 | 2024 | ||
| Phylogeny | 16S rRNA deep sequencing identifies Actinotignum schaalii as the major component of a polymicrobial intra-abdominal infection and implicates a urinary source. | Bryan A, Kirkpatrick LM, Manaloor JJ, Salipante SJ. | JMM Case Rep | 10.1099/jmmcr.0.005091 | 2017 | |
| Pooled Antibiotic Susceptibility Testing for Polymicrobial UTI Performs Within CLSI Validation Standards. | Festa RA, Cockerill FR, Pesano RL, Haley E, Luke N, Mathur M, Chen X, Havrilla J, Percaccio M, Magallon J, Erickson S, Ghashghaie M, Rosas A, Baunoch D. | Antibiotics (Basel) | 10.3390/antibiotics14020143 | 2025 | ||
| Enzymology | Significant increase in cultivation of Gardnerella vaginalis, Alloscardovia omnicolens, Actinotignum schaalii, and Actinomyces spp. in urine samples with total laboratory automation. | Klein S, Nurjadi D, Horner S, Heeg K, Zimmermann S, Burckhardt I. | Eur J Clin Microbiol Infect Dis | 10.1007/s10096-018-3250-6 | 2018 | |
| Acute Esophageal Necrosis in a Patient With Prostate Cancer Postchemotherapy. | Grisham E, Abu Khalaf S, Kuwajima V. | ACG Case Rep J | 10.14309/crj.0000000000000366 | 2020 | ||
| Pathogenicity | Antimicrobial susceptibility of clinical isolates of Actinomyces and related genera reveals an unusual clindamycin resistance among Actinomyces urogenitalis strains. | Barberis C, Budia M, Palombarani S, Rodriguez CH, Ramirez MS, Arias B, Bonofiglio L, Famiglietti A, Mollerach M, Almuzara M, Vay C. | J Glob Antimicrob Resist | 10.1016/j.jgar.2016.11.007 | 2017 | |
| Comparison Shows that Multiplex Polymerase Chain Reaction Identifies Infection-associated Urinary Biomarker-positive Urinary Tract Infections That Are Missed by Standard Urine Culture. | Haley E, Luke N, Mathur M, Festa RA, Wang J, Jiang Y, Anderson L, Baunoch D. | Eur Urol Open Sci | 10.1016/j.euros.2023.10.008 | 2023 | ||
| Emerging Technologies for the Diagnosis of Urinary Tract Infections: Advances in Molecular Detection and Resistance Profiling. | Baimakhanova B, Sadanov A, Berezin V, Baimakhanova G, Trenozhnikova L, Orasymbet S, Seitimova G, Kalmakhanov S, Xetayeva G, Shynykul Z, Seidakhmetova A, Turgumbayeva A. | Diagnostics (Basel) | 10.3390/diagnostics15192469 | 2025 | ||
| Urine biomarkers individually and as a consensus model show high sensitivity and specificity for detecting UTIs. | Akhlaghpour M, Haley E, Parnell L, Luke N, Mathur M, Festa RA, Percaccio M, Magallon J, Remedios-Chan M, Rosas A, Wang J, Jiang Y, Anderson L, Baunoch D. | BMC Infect Dis | 10.1186/s12879-024-09044-2 | 2024 | ||
| Elevated UTI Biomarkers in Symptomatic Patients with Urine Microbial Densities of 10,000 CFU/mL Indicate a Lower Threshold for Diagnosing UTIs. | Parnell LKS, Luke N, Mathur M, Festa RA, Haley E, Wang J, Jiang Y, Anderson L, Baunoch D. | Diagnostics (Basel) | 10.3390/diagnostics13162688 | 2023 | ||
| Total Laboratory Automation and Three Shifts Reduce Turnaround Time of Cerebrospinal Fluid Culture Results in the Chinese Clinical Microbiology Laboratory. | Zhang W, Wu S, Deng J, Liao Q, Liu Y, Xiong L, Shu L, Yuan Y, Xiao Y, Ma Y, Kang M, Li D, Xie Y. | Front Cell Infect Microbiol | 10.3389/fcimb.2021.765504 | 2021 | ||
| Urine and vaginal microbiota compositions of postmenopausal and premenopausal women differ regardless of recurrent urinary tract infection and renal transplant status. | Hugenholtz F, van der Veer C, Terpstra ML, Borgdorff H, van Houdt R, Bruisten S, Geerlings SE, van de Wijgert JHHM. | Sci Rep | 10.1038/s41598-022-06646-1 | 2022 | ||
| Concordance Between Antibiotic Resistance Genes and Susceptibility in Symptomatic Urinary Tract Infections. | Baunoch D, Luke N, Wang D, Vollstedt A, Zhao X, Ko DSC, Huang S, Cacdac P, Sirls LT. | Infect Drug Resist | 10.2147/idr.s323095 | 2021 | ||
| Enzymology | Clinical and microbiological features of Actinotignum bacteremia: a retrospective observational study of 57 cases. | Pedersen H, Senneby E, Rasmussen M. | Eur J Clin Microbiol Infect Dis | 10.1007/s10096-016-2862-y | 2017 | |
| Actinobaculum schaalii: A truly emerging pathogen?: Actinobaculum schaalii: un pathogène réellement émergent? | Prigent G, Perillaud C, Amara M, Coutard A, Blanc C, Pangon B. | New Microbes New Infect | 10.1016/j.nmni.2015.10.012 | 2016 | ||
| Urinary microbiota of women with recurrent urinary tract infection: collection and culture methods. | Hochstedler BR, Burnett L, Price TK, Jung C, Wolfe AJ, Brubaker L. | Int Urogynecol J | 10.1007/s00192-021-04780-4 | 2022 | ||
| Assessment of the Urinary Microbiota of MSM Using Urine Culturomics Reveals a Diverse Microbial Environment. | Sawhney SS, Johnson C, Shupe A, Fine J, Dantas G, Burnham CD, Yarbrough ML. | Clin Chem | 10.1093/clinchem/hvab199 | 2021 | ||
| Transcriptome | Enhanced Hemolytic Activity of Mesophilic Aeromonas salmonicida SRW-OG1 Is Brought about by Elevated Temperatures. | Chen Y, Wang J, Cai H, Lin M, Zhang Y, Huang L. | Microorganisms | 10.3390/microorganisms10102033 | 2022 | |
| Phylogeny | Clinical Significance of Commensal Gram-Positive Rods Routinely Isolated from Patient Samples. | Leal SM, Jones M, Gilligan PH. | J Clin Microbiol | 10.1128/jcm.01393-16 | 2016 | |
| Molecular Techniques Complement Culture-Based Assessment of Bacteria Composition in Mixed Biofilms of Urinary Tract Catheter-Related Samples. | Kotaskova I, Obrucova H, Malisova B, Videnska P, Zwinsova B, Peroutkova T, Dvorackova M, Kumstat P, Trojan P, Ruzicka F, Hola V, Freiberger T. | Front Microbiol | 10.3389/fmicb.2019.00462 | 2019 | ||
| The urobiome of continent adult women: a cross-sectional study. | Price TK, Hilt EE, Thomas-White K, Mueller ER, Wolfe AJ, Brubaker L. | BJOG | 10.1111/1471-0528.15920 | 2020 | ||
| Phylogeny | Cultivation of Peptidiphaga gingivicola from subgingival plaque: The first representative of a novel genus of Actinomycetaceae. | Beall CJ, Mokrzan EM, Griffen AL, Leys EJ. | Mol Oral Microbiol | 10.1111/omi.12205 | 2018 | |
| The urinary microbiota: a paradigm shift for bladder disorders? | Brubaker L, Wolfe A. | Curr Opin Obstet Gynecol | 10.1097/gco.0000000000000298 | 2016 | ||
| A multicentre study investigating parameters which influence direct bacterial identification from urine. | Zboromyrska Y, Bosch J, Aramburu J, Cuadros J, Garcia-Riestra C, Guzman-Puche J, Liebana Martos C, Loza E, Munoz-Algarra M, Ruiz de Alegria C, Sanchez-Hellin V, Vila J. | PLoS One | 10.1371/journal.pone.0207822 | 2018 | ||
| Actinomyces and related organisms in human infections. | Kononen E, Wade WG. | Clin Microbiol Rev | 10.1128/cmr.00100-14 | 2015 | ||
| Phylogeny | An Update on the Novel Genera and Species and Revised Taxonomic Status of Bacterial Organisms Described in 2016 and 2017. | Munson E, Carroll KC. | J Clin Microbiol | 10.1128/jcm.01181-18 | 2019 | |
| Genetics | Draft genome sequence of Actinotignum schaalii DSM 15541T: Genetic insights into the lifestyle, cell fitness and virulence. | Yassin AF, Langenberg S, Huntemann M, Clum A, Pillay M, Palaniappan K, Varghese N, Mikhailova N, Mukherjee S, Reddy TBK, Daum C, Shapiro N, Ivanova N, Woyke T, Kyrpides NC | PLoS One | 10.1371/journal.pone.0188914 | 2017 | |
| Genetics | Complete Genome Sequence of Actinobaculum schaalii Strain CCUG 27420. | Kristiansen R, Dueholm MS, Bank S, Nielsen PH, Karst SM, Cattoir V, Lienhard R, Grisold AJ, Olsen AB, Reinhard M, Soby KM, Christensen JJ, Prag J, Thomsen TR | Genome Announc | 10.1128/genomeA.00880-14 | 2014 | |
| 'Actinotignum timonense' sp. nov., a new bacterial species isolated from a human urine sample. | Brahimi S, Cadoret F, Fournier PE, Moal V, Raoult D. | New Microbes New Infect | 10.1016/j.nmni.2017.01.002 | 2017 | ||
| Phylogeny | Fudania jinshanensis gen. nov., sp. nov., isolated from faeces of the Tibetan antelope (Pantholops hodgsonii) in China. | Zhu W, Yang J, Lu S, Lai XH, Jin D, Pu J, Wang X, Huang Y, Zhang S, Huang Y, Tao Y, Ren Z, Wu X, Zhang X, Xu J, Xu J. | Int J Syst Evol Microbiol | 10.1099/ijsem.0.003586 | 2019 | |
| Phylogeny | Dissection of the genus Actinobaculum: Reclassification of Actinobaculum schaalii Lawson et al. 1997 and Actinobaculum urinale Hall et al. 2003 as Actinotignum schaalii gen. nov., comb. nov. and Actinotignum urinale comb. nov., description of Actinotignum sanguinis sp. nov. and emended descriptions of the genus Actinobaculum and Actinobaculum suis; and re-examination of the culture deposited as Actinobaculum massiliense CCUG 47753T ( = DSM 19118T), revealing that it does not represent a strain of this species. | Yassin AF, Sproer C, Pukall R, Sylvester M, Siering C, Schumann P | Int J Syst Evol Microbiol | 10.1099/ijs.0.069294-0 | 2014 | |
| Phylogeny | Characterization of some Actinomyces-like isolates from human clinical specimens: reclassification of Actinomyces suis (Soltys and Spratling) as Actinobaculum suis comb. nov. and description of Actinobaculum schaalii sp. nov. | Lawson PA, Falsen E, Akervall E, Vandamme P, Collins MD | Int J Syst Bacteriol | 10.1099/00207713-47-3-899 | 1997 |
| #5990 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 15541 |
| #20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 ) |
| #20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 ) |
| #23353 | Paul A. Lawson, Enevold Falsen, Eva Akervall, Peter Vandamme, Matthew D. Collins: Characterization of Some Actinomyces-Like Isolates from Human Clinical Specimens: Reclassification of Actinomyces suis (Soltys and Spratling) as Actinobaculum suis comb. nov. and Description of Actinobaculum schaalii sp. nov.. IJSEM 47: 899 - 903 1997 ( DOI 10.1099/00207713-47-3-899 , PubMed 9226926 ) |
| #23354 | A. F. Yassin, C. Spröer, R. Pukall, M. Sylvester, C. Siering, P. Schumann: Dissection of the genus Actinobaculum: Reclassification of Actinobaculum schaalii Lawson et al. 1997 and Actinobaculum urinale Hall et al. 2003 as Actinotignum schaalii gen. nov., comb. nov. and Actinotignum urinale comb. nov., description of Actinotignum sanguinis sp. nov. and emended descriptions of the genus Actinobaculum and Actinobaculum suis; and re-examination of the culture deposited as Actinobaculum massiliense CCUG 47753T (=DSM 19118T), revealing that it does not represent a strain of this species. IJSEM 65: 615 - 624 2015 ( DOI 10.1099/ijs.0.069294-0 , PubMed 25406238 ) |
| #32828 | ; Curators of the CIP; |
| #48774 | Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 27420 |
| #66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) . |
| #68381 | Automatically annotated from API rID32STR . |
| #68382 | Automatically annotated from API zym . |
| #69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta . |
| #122503 | Collection of Institut Pasteur ; Curators of the CIP; CIP 105739 |
| #124043 | Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy . |
| #125438 | Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 ) |
| #125439 | Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 . |
| #126262 | A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 ) |
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