Actinobaculum suis (DSM 20639, ATCC 33144, CCUG 19206)

Name: Actinobaculum suis (DSM 20639, ATCC 33144, CCUG 19206)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 144

Type strain

Culture col. no. DSM 20639 ATCC 33144 CCUG 19206 CIP 105361 LMG 18291 1 more

NCBI tax ID(s) 1657

Special Collections DSMZ CCUG CIP Literature strains

History DSMZ <- ATCC <- M.A. Soltys, 50052 (Corynebacterium suis) CIP <- 1997, DSM <- ATCC <- J.G. Wegienek and C.A. Reddy: strain 50052, Corynebacterium suis <- M.A. Soltys

Links

Actinobaculum suis DSM 20639 is an anaerobe, Gram-positive, rod-shaped animal pathogen that forms circular colonies and was isolated from cystitis and pyelonephritis of pig.

Gram-positive rod-shaped colony-forming anaerobe animal pathogen genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 92512

LMG 18291,ATCC 33144,CCUG 19206,DSM 20639,CIP 105361,BCRC 12980,CCRC 12980

@ref 20215

Last LPSN update 2026-05-29 08:24:57

Domain Bacteria

Phylum Actinomycetota

Class Actinomycetes

Order Actinomycetales

Family Actinomycetaceae

Genus Actinobaculum

Species Actinobaculum suis

Full scientific name Actinobaculum suis (Wegienek and Reddy 1982 ex Soltys and Spratling 1957) Lawson et al. 1997

Synonyms (2)

Eubacterium suis
Actinomyces suis

BacDive ID	Other strains from **Actinobaculum suis** (5)	Type strain
143456	A. suis CCUG 19370
143457	A. suis CCUG 19371
143458	A. suis CCUG 19372
143459	A. suis CCUG 19373
149507	A. suis CCUG 37879, NCTC 10373

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape	Confidence
23353	positive	1.0-3.0 µm	0.5 µm	rod-shaped
23354	positive	2.0-3.0 µm	0.3-0.5 µm	rod-shaped
123376	positive			rod-shaped
125438					95.5
125438	positive				92.364

Colony morphology

@ref	Type of hemolysis	Colony size	Colony color	Colony shape	Incubation period	Medium used
23354	gamma	0.3-0.5 mm	white	circular	2 days	Columbia blood agar
23354	gamma	3.0-5.0 mm	grey and opaque		7 days	Columbia blood agar
123376

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
23354	Columbia blood agar
23353	Peptone-yeast extract-starch broth
8985	CHOPPED MEAT MEDIUM WITH CARBOHYDRATES (DSMZ Medium 110)	Medium recipe at MediaDive	Name: CHOPPED MEAT MEDIUM WITH CARBOHYDRATES (DSMZ Medium 110) Composition: Ground beef 500.0 g/l Casitone 30.0 g/l Agar 15.0 g/l K2HPO4 5.0 g/l Yeast extract 5.0 g/l D-Glucose 4.0 g/l Starch 1.0 g/l Maltose 1.0 g/l Cellobiose 1.0 g/l L-Cysteine HCl 0.5 g/l Ethanol 0.19 g/l Vitamin K3 0.05 g/l Hemin 0.005 g/l Sodium resazurin 0.0005 g/l Vitamin K1 NaOH Distilled water
33054	MEDIUM 243 - for Actinobaculum suis		Distilled water make up to (1000.000 ml);Maltose (1.000 g);Agar (15.000g);Glucose (4.000 g);Yeast extract (5.000 g);Potassium di-hydrogen phosphate (5.000 g);Resazurin (1.000 mg);Cooked meat medium (125.000 g);Cellobiose (1.000 g);Starch maize (1.000 g);C
123376	CIP Medium 243	Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)
8985	positive	growth	37
23353	negative	growth	<23
23353	positive	optimum	37
23353	positive	minimum	30
23353	positive	maximum	43
23354	negative	growth	22-23
23354	positive	optimum	37
23354	positive	growth	30-43
33054	positive	growth	37
46981	positive	growth	37
123376	positive	growth	30-41
123376	negative	growth	10
123376	negative	growth	25
123376	negative	growth	45

Culture pH

@ref	Ability	Type	PH
23353	positive	optimum	7.0-8.0
23354	positive	optimum	7.0-8.0
23353		growth	<5.0
23354		growth	<5.0

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance
8985	anaerobe
23353	anaerobe
23354	obligate anaerobe
46981	anaerobe

Spore formation

@ref	Spore formation	Confidence
23354
125438		90.37

Halophily

@ref	Salt	Growth	Tested relation	Concentration
123376	NaCl	positive	growth	0 %
123376	NaCl		growth	2 %
123376	NaCl		growth	4 %
123376	NaCl		growth	6 %
123376	NaCl		growth	8 %
123376	NaCl		growth	10 %

Murein

@ref	Murein short key	Type
8985	A11.53	A5alpha L-Lys-L-Ala-L-Lys-D-Glu
23353		A5alpha L-Lys-L-Ala-L-Lys-D-Glu

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
23354	27613 ChEBI	amygdalin	-	builds acid from
23353	27613 ChEBI	amygdalin	-	fermentation
23353	22599 ChEBI	arabinose	-	fermentation
68380	29016 ChEBI	arginine	-	hydrolysis	from API rID32A
23354	17057 ChEBI	cellobiose	-	builds acid from
23353	17057 ChEBI	cellobiose	-	fermentation
23354	17634 ChEBI	D-glucose	-	builds acid from
68379	16899 ChEBI	D-mannitol	-	fermentation	from API Coryne
68380	16024 ChEBI	D-mannose	-	fermentation	from API rID32A
23354	16988 ChEBI	D-ribose	+	builds acid from
68379	16988 ChEBI	D-ribose	+	fermentation	from API Coryne
23354	65327 ChEBI	D-xylose	+	builds acid from
68379	65327 ChEBI	D-xylose	+	fermentation	from API Coryne
23354	17113 ChEBI	erythritol	-	builds acid from
23353	17113 ChEBI	erythritol	-	fermentation
23353	4853 ChEBI	esculin	-	fermentation
23353	4853 ChEBI	esculin	-	hydrolysis
23354	4853 ChEBI	esculin	-	hydrolysis
68379	4853 ChEBI	esculin	-	hydrolysis	from API Coryne
123376	4853 ChEBI	esculin	-	hydrolysis
23354	28757 ChEBI	fructose	-	builds acid from
23353	28757 ChEBI	fructose	-	fermentation
23354	16813 ChEBI	galactitol	-	builds acid from
23353	16813 ChEBI	galactitol	-	fermentation
23354	28260 ChEBI	galactose	-	builds acid from
23353	28260 ChEBI	galactose	-	fermentation
23353	5291 ChEBI	gelatin	-	hydrolysis
23354	5291 ChEBI	gelatin	-	hydrolysis
68379	5291 ChEBI	gelatin	-	hydrolysis	from API Coryne
23353	17234 ChEBI	glucose	-	fermentation
23354	17754 ChEBI	glycerol	-	builds acid from
23353	17754 ChEBI	glycerol	-	fermentation
23354	28087 ChEBI	glycogen	+	builds acid from
23353	28087 ChEBI	glycogen	+	fermentation
68379	28087 ChEBI	glycogen	+	fermentation	from API Coryne
23354	606565 ChEBI	hippurate	+	hydrolysis
123376	606565 ChEBI	hippurate	+	hydrolysis
23354	15443 ChEBI	inulin	-	builds acid from
23353	15443 ChEBI	inulin	-	fermentation
23354	30849 ChEBI	L-arabinose	-	builds acid from
68380	29985 ChEBI	L-glutamate	-	degradation	from API rID32A
23353	24996 ChEBI	lactate	-	fermentation
23354	17716 ChEBI	lactose	-	builds acid from
23353	17716 ChEBI	lactose	-	fermentation
68379	17716 ChEBI	lactose	-	fermentation	from API Coryne
23354	17306 ChEBI	maltose	+	builds acid from
23353	17306 ChEBI	maltose	+	fermentation
68379	17306 ChEBI	maltose	+	fermentation	from API Coryne
23354	29864 ChEBI	mannitol	-	builds acid from
23353	29864 ChEBI	mannitol	-	fermentation
23354	37684 ChEBI	mannose	-	builds acid from
23353	37684 ChEBI	mannose	-	fermentation
23354	6731 ChEBI	melezitose	-	builds acid from
23353	6731 ChEBI	melezitose	-	fermentation
23354	28053 ChEBI	melibiose	-	builds acid from
23353	28053 ChEBI	melibiose	-	fermentation
23354	17268 ChEBI	myo-inositol	-	builds acid from
23353	17268 ChEBI	myo-inositol	-	fermentation
23353	17632 ChEBI	nitrate	-	reduction
68379	17632 ChEBI	nitrate	-	reduction	from API Coryne
68380	17632 ChEBI	nitrate	-	reduction	from API rID32A
123376	17632 ChEBI	nitrate	-	reduction
123376	17632 ChEBI	nitrate	+	respiration
123376	16301 ChEBI	nitrite	-	reduction
23353	15361 ChEBI	pyruvate	-	fermentation
23354	16634 ChEBI	raffinose	-	builds acid from
23353	16634 ChEBI	raffinose	-	fermentation
23354	26546 ChEBI	rhamnose	-	builds acid from
23353	26546 ChEBI	rhamnose	-	fermentation
23354	15963 ChEBI	ribitol	-	builds acid from
23353	15963 ChEBI	ribitol	-	fermentation
23354	17814 ChEBI	salicin	-	builds acid from
23353	17814 ChEBI	salicin	-	fermentation
23354	30911 ChEBI	sorbitol	-	builds acid from
23353	30911 ChEBI	sorbitol	-	fermentation
23354	28017 ChEBI	starch	+	builds acid from
23353	28017 ChEBI	starch	+	fermentation
23354	17992 ChEBI	sucrose	-	builds acid from
23353	17992 ChEBI	sucrose	-	fermentation
68379	17992 ChEBI	sucrose	-	fermentation	from API Coryne
23354	26986 ChEBI	threonine	-	builds acid from
23353	26986 ChEBI	threonine	-	fermentation
23354	27082 ChEBI	trehalose	-	builds acid from
23353	27082 ChEBI	trehalose	-	fermentation
23353	27897 ChEBI	tryptophan	-	energy source
68380	27897 ChEBI	tryptophan	-	energy source	from API rID32A
68379	16199 ChEBI	urea	+	hydrolysis	from API Coryne
68380	16199 ChEBI	urea	+	hydrolysis	from API rID32A

Metabolite production

@ref	Chebi-ID	Metabolite
23353	35581 ChEBI	indole
68380	35581 ChEBI	indole	from API rID32A
123376	35581 ChEBI	indole

Metabolite tests

@ref	Chebi-ID	Metabolite	Indole test	Voges-proskauer-test	Methylred-test
123376	15688 ChEBI	acetoin		-
123376	17234 ChEBI	glucose			-
23353	35581 ChEBI	indole	-
68380	35581 ChEBI	indole	-			from API rID32A

Enzymes

@ref	Value	Activity	Ec
23354	acid phosphatase	+	3.1.3.2
68382	acid phosphatase	+	3.1.3.2	from API zym
68380	alanine arylamidase	+	3.4.11.2	from API rID32A
123376	alcohol dehydrogenase	-	1.1.1.1
23354	alkaline phosphatase	+	3.1.3.1
68382	alkaline phosphatase	+	3.1.3.1	from API zym
68379	alkaline phosphatase	+	3.1.3.1	from API Coryne
68380	alpha-arabinosidase	-	3.2.1.55	from API rID32A
23354	alpha-chymotrypsin	-	3.4.21.1
68382	alpha-chymotrypsin	-	3.4.21.1	from API zym
23354	alpha-fucosidase	-	3.2.1.51
68382	alpha-fucosidase	-	3.2.1.51	from API zym
68380	alpha-fucosidase	-	3.2.1.51	from API rID32A
23354	alpha-galactosidase	-	3.2.1.22
68382	alpha-galactosidase	-	3.2.1.22	from API zym
68380	alpha-galactosidase	-	3.2.1.22	from API rID32A
23354	alpha-glucosidase	+	3.2.1.20
68382	alpha-glucosidase	+	3.2.1.20	from API zym
68380	alpha-glucosidase	+	3.2.1.20	from API rID32A
68379	alpha-glucosidase	+	3.2.1.20	from API Coryne
23354	alpha-mannosidase	+	3.2.1.24
68382	alpha-mannosidase	-	3.2.1.24	from API zym
123376	amylase	+
23354	arginine dihydrolase	-	3.5.3.6
68380	arginine dihydrolase	-	3.5.3.6	from API rID32A
23354	beta-galactosidase	-	3.2.1.23
68382	beta-galactosidase	-	3.2.1.23	from API zym
123376	beta-galactosidase	-	3.2.1.23
68380	beta-galactosidase	-	3.2.1.23	from API rID32A
68379	beta-galactosidase	-	3.2.1.23	from API Coryne
68380	beta-Galactosidase 6-phosphate	-		from API rID32A
23354	beta-glucosidase	-	3.2.1.21
68382	beta-glucosidase	-	3.2.1.21	from API zym
68380	beta-glucosidase	-	3.2.1.21	from API rID32A
68379	beta-glucosidase	-	3.2.1.21	from API Coryne
23354	beta-glucuronidase	+	3.2.1.31
68382	beta-glucuronidase	+	3.2.1.31	from API zym
68379	beta-glucuronidase	+	3.2.1.31	from API Coryne
68380	beta-glucuronidase	+	3.2.1.31	from API rID32A
123376	caseinase	-	3.4.21.50
23354	catalase	-	1.11.1.6
123376	catalase	-	1.11.1.6
68379	catalase	-	1.11.1.6	from API Coryne
23354	cystine arylamidase	-	3.4.11.3
68382	cystine arylamidase	+	3.4.11.3	from API zym
23354	cytochrome oxidase	-	1.9.3.1
123376	DNase	-
23354	esterase (C 4)	-
68382	esterase (C 4)	+		from API zym
23354	esterase lipase (C 8)	+
68382	esterase lipase (C 8)	+		from API zym
123376	gamma-glutamyltransferase	-	2.3.2.2
123376	gelatinase	-
68379	gelatinase	-		from API Coryne
68380	glutamate decarboxylase	-	4.1.1.15	from API rID32A
68380	glutamyl-glutamate arylamidase	-		from API rID32A
68380	glycin arylamidase	+		from API rID32A
68380	histidine arylamidase	+		from API rID32A
123376	lecithinase	-
23354	leucine arylamidase	+	3.4.11.1
68382	leucine arylamidase	+	3.4.11.1	from API zym
68380	leucine arylamidase	+	3.4.11.1	from API rID32A
68380	leucyl glycin arylamidase	+	3.4.11.1	from API rID32A
123376	lipase	-
23354	lipase (C 14)	-
68382	lipase (C 14)	-		from API zym
123376	lysine decarboxylase	-	4.1.1.18
23354	N-acetyl-beta-glucosaminidase	+	3.2.1.52
68382	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API zym
68380	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API rID32A
68379	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API Coryne
23354	naphthol-AS-BI-phosphohydrolase	+
68382	naphthol-AS-BI-phosphohydrolase	+		from API zym
123376	ornithine decarboxylase	-	4.1.1.17
123376	oxidase	-
123376	phenylalanine ammonia-lyase	-	4.3.1.24
68380	phenylalanine arylamidase	+		from API rID32A
68380	proline-arylamidase	+	3.4.11.5	from API rID32A
123376	protease	-
23354	pyrazinamidase	-	3.5.1.B15
68379	pyrazinamidase	-	3.5.1.B15	from API Coryne
23354	pyrrolidonyl arylamidase	+	3.4.19.3
68380	pyrrolidonyl arylamidase	+	3.4.19.3	from API rID32A
68379	pyrrolidonyl arylamidase	+	3.4.19.3	from API Coryne
68380	serine arylamidase	+		from API rID32A
23354	trypsin	-	3.4.21.4
68382	trypsin	-	3.4.21.4	from API zym
23353	tryptophan deaminase	-	4.1.99.1
123376	tryptophan deaminase	+
68380	tryptophan deaminase	-	4.1.99.1	from API rID32A
123376	tween esterase	-
68380	tyrosine arylamidase	+		from API rID32A
23353	urease	+	3.5.1.5
123376	urease	+	3.5.1.5
68380	urease	+	3.5.1.5	from API rID32A
68379	urease	+	3.5.1.5	from API Coryne
23354	valine arylamidase	-
68382	valine arylamidase	-		from API zym

Pathway annotation

Computationally determined by

@ref	pathway	enzyme coverage	annotated reactions
66794	formaldehyde oxidation	100	3 of 3
66794	anapleurotic synthesis of oxalacetate	100	1 of 1
66794	UDP-GlcNAc biosynthesis	100	3 of 3
66794	folate polyglutamylation	100	1 of 1
66794	CDP-diacylglycerol biosynthesis	100	2 of 2
66794	ppGpp biosynthesis	100	4 of 4
66794	L-lactaldehyde degradation	100	3 of 3
66794	coenzyme A metabolism	100	4 of 4
66794	starch degradation	90	9 of 10
66794	chorismate metabolism	88.89	8 of 9
66794	peptidoglycan biosynthesis	86.67	13 of 15
66794	threonine metabolism	80	8 of 10
66794	Entner Doudoroff pathway	80	8 of 10
66794	glycogen metabolism	80	4 of 5
66794	valine metabolism	77.78	7 of 9
66794	palmitate biosynthesis	77.27	17 of 22
66794	phenylalanine metabolism	76.92	10 of 13
66794	pyrimidine metabolism	75.56	34 of 45
66794	ketogluconate metabolism	75	6 of 8
66794	acetate fermentation	75	3 of 4
66794	gluconeogenesis	75	6 of 8
66794	C4 and CAM-carbon fixation	75	6 of 8
66794	sulfopterin metabolism	75	3 of 4
66794	isoleucine metabolism	75	6 of 8
66794	photosynthesis	71.43	10 of 14
66794	ubiquinone biosynthesis	71.43	5 of 7
66794	leucine metabolism	69.23	9 of 13
66794	purine metabolism	67.02	63 of 94
66794	d-mannose degradation	66.67	6 of 9
66794	acetoin degradation	66.67	2 of 3
66794	aspartate and asparagine metabolism	66.67	6 of 9
66794	NAD metabolism	66.67	12 of 18
66794	octane oxidation	66.67	2 of 3
66794	glycolysis	64.71	11 of 17
66794	pentose phosphate pathway	63.64	7 of 11
66794	dTDPLrhamnose biosynthesis	62.5	5 of 8
66794	6-hydroxymethyl-dihydropterin diphosphate biosynthesis	62.5	5 of 8
66794	degradation of sugar alcohols	62.5	10 of 16
66794	vitamin B1 metabolism	61.54	8 of 13
66794	factor 420 biosynthesis	60	3 of 5
66794	lipoate biosynthesis	60	3 of 5
66794	metabolism of amino sugars and derivatives	60	3 of 5
66794	degradation of aromatic, nitrogen containing compounds	58.33	7 of 12
66794	reductive acetyl coenzyme A pathway	57.14	4 of 7
66794	benzoyl-CoA degradation	57.14	4 of 7
66794	oxidative phosphorylation	57.14	52 of 91
66794	mevalonate metabolism	57.14	4 of 7
66794	degradation of sugar acids	56	14 of 25
66794	serine metabolism	55.56	5 of 9
66794	CO2 fixation in Crenarchaeota	55.56	5 of 9
66794	degradation of hexoses	55.56	10 of 18
66794	d-xylose degradation	54.55	6 of 11
66794	metabolism of disaccharids	54.55	6 of 11
66794	urea cycle	53.85	7 of 13
66794	degradation of pentoses	53.57	15 of 28
66794	histidine metabolism	51.72	15 of 29
66794	adipate degradation	50	1 of 2
66794	ethanol fermentation	50	1 of 2
66794	glutathione metabolism	50	7 of 14
66794	suberin monomers biosynthesis	50	1 of 2
66794	cis-vaccenate biosynthesis	50	1 of 2
66794	butanoate fermentation	50	2 of 4
66794	glycogen biosynthesis	50	2 of 4
66794	cysteine metabolism	50	9 of 18
66794	pantothenate biosynthesis	50	3 of 6
66794	alanine metabolism	48.28	14 of 29
66794	tryptophan metabolism	47.37	18 of 38
66794	glutamate and glutamine metabolism	46.43	13 of 28
66794	methionine metabolism	46.15	12 of 26
66794	proline metabolism	45.45	5 of 11
66794	non-pathway related	44.74	17 of 38
66794	tetrahydrofolate metabolism	42.86	6 of 14
66794	propanol degradation	42.86	3 of 7
66794	heme metabolism	42.86	6 of 14
66794	cardiolipin biosynthesis	42.86	3 of 7
66794	lipid metabolism	41.94	13 of 31
66794	arginine metabolism	41.67	10 of 24
66794	glycine metabolism	40	4 of 10
66794	isoprenoid biosynthesis	38.46	10 of 26
66794	carnitine metabolism	37.5	3 of 8
66794	tyrosine metabolism	35.71	5 of 14
66794	citric acid cycle	35.71	5 of 14
66794	glycolate and glyoxylate degradation	33.33	2 of 6
66794	IAA biosynthesis	33.33	1 of 3
66794	sphingosine metabolism	33.33	2 of 6
66794	lysine metabolism	33.33	14 of 42
66794	flavin biosynthesis	33.33	5 of 15
66794	acetyl CoA biosynthesis	33.33	1 of 3
66794	lipid A biosynthesis	33.33	3 of 9
66794	sulfoquinovose degradation	33.33	1 of 3
66794	selenocysteine biosynthesis	33.33	2 of 6
66794	myo-inositol biosynthesis	30	3 of 10
66794	vitamin B6 metabolism	27.27	3 of 11
66794	dolichyl-diphosphooligosaccharide biosynthesis	27.27	3 of 11
66794	toluene degradation	25	1 of 4
66794	cyclohexanol degradation	25	1 of 4
66794	lactate fermentation	25	1 of 4
66794	CMP-KDO biosynthesis	25	1 of 4
66794	androgen and estrogen metabolism	25	4 of 16
66794	ascorbate metabolism	22.73	5 of 22
66794	nitrate assimilation	22.22	2 of 9
66794	molybdenum cofactor biosynthesis	22.22	2 of 9
66794	polyamine pathway	21.74	5 of 23

API coryne

@ref	Reduction of nitrateNIT	PYZ	PYRA	PAL	beta GUR	beta GAL	alpha GLU	beta NAG	ESC	URE	GEL	Control fermentationControl	GLU	RIB	XYL	MAN	MAL	LAC	SAC	GLYG	CAT
46981	-	-	+	+	+	-	+	-	-	+	-	-	not determinedn.d.	+	+	-	+	-	-	+	-

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
123376	-	+	+	+	-	+	-	+	-	-	+	+	-	-	+	+	-	-	-	-

API rID32A

@ref	URE	ADH (Arg)	alpha GAL	beta GAL	beta-Galactosidase 6-phosphatebeta GP	alpha GLU	beta GLU	alpha ARA	beta GUR	beta-N-Acetyl-beta-glucosaminidasebeta NAG	MNE	RAF	GDC	alpha FUC	Reduction of nitrateNIT	IND	PAL	L-arginine arylamidaseArgA	ProA	LGA	Phenylalanine arylamidasePheA	Leucine arylamidaseLeuA	PyrA	Tyrosine arylamidaseTyrA	Alanine arylamidaseAlaA	Glycin arylamidaseGlyA	Histidine arylamidaseHisA	Glutamyl-glutamate arylamidaseGGA	Serine arylamidaseSerA
8985	+	-	-	-	-	+	-	-	+	-	-	+/-	-	-	-	-	+/-	+/-	+	+	+	+	+	+	+	+	+	-	+

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Infection	#Disease	-
#Host Body-Site	#Urogenital tract	-
#Host	#Mammals	#Suidae (Pig,Swine)

Isolation

@ref	Sample type
8985	cystitis and pyelonephritis of pig
23354	from swine
46981	Swine cystitis and pyelonephritis
123376	Animal, Swine, cystitis

Taxonmaps

69479

Global distribution of 16S sequence S83623 (>99% sequence identity) for Actinobaculum suis subclade from Microbeatlas

Aquatic Samples	15
Soil Samples	21
Animal Samples	399
Plant Samples	7
Total Samples	442

Interaction and safety

Risk assessment

@ref	Pathogenicity animal	Biosafety level	Biosafety level comment
8985		2	Risk group (German classification) According to TRBA 466
123376		1	Risk group (French classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	IMG-taxon 2675903157 annotated assembly for Actinobaculum suis DSM 20639	contig	GCA_900102025	1657.8	2675903157	1657	68.86

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
8985	Actinobaculum suis strain DSM 20639 16S ribosomal RNA gene, partial sequence	S83623	1506		1657

GC content

@ref	GC-content (mol%)	Method
8985	55.0	thermal denaturation, midpoint method (Tm)
23353	55.0	Thermal denaturation, fluorometry

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: IMG-taxon 2675903157 annotated assembly for Actinobaculum suis DSM 20639
NCBI: GCA_900102025

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	63.63	no
125439	gram_stain	BacteriaNetⓘ	variable	63.83	no
125439	motility	BacteriaNetⓘ	no	78.63	no
125439	spore_formation	BacteriaNetⓘ	no	83.63	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Actinobaculum suis strain DSM 20639
PATRIC: 1657.8

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	92.36	no
125438	anaerobic	anaerobicⓘ	no	58.26	yes
125438	spore-forming	spore-formingⓘ	no	90.37	yes
125438	aerobic	aerobicⓘ	no	72.65	yes
125438	thermophilic	thermophileⓘ	no	93.85	yes
125438	flagellated	motile2+ⓘ	no	95.50	yes

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Actinomyces denticolens as a causative agent of actinomycosis in animals.	Murakami S, Kobayashi T, Sekigawa Y, Torii Y, Kanesaki Y, Ishige T, Yokoyama E, Ishiwata H, Hamada M, Tamura T.	J Vet Med Sci	10.1292/jvms.18-0207	2018
Genetics	Ancrocorticia populi gen. nov., sp. nov, isolated from the symptomatic bark of Populus × euramericana canker.	Xu GT, Xue H, Piao CG, Guo MW, Li Y.	Microbiologyopen	10.1002/mbo3.792	2019
Phylogeny	Development of amplified 16S ribosomal DNA restriction analysis for identification of Actinomyces species and comparison with pyrolysis-mass spectrometry and conventional biochemical tests.	Hall V, O'Neill GL, Magee JT, Duerden BI.	J Clin Microbiol	10.1128/jcm.37.7.2255-2261.1999	1999
Metabolism	Quantification of the flavonoid-degrading bacterium Eubacterium ramulus in human fecal samples with a species-specific oligonucleotide hybridization probe.	Simmering R, Kleessen B, Blaut M.	Appl Environ Microbiol	10.1128/aem.65.8.3705-3709.1999	1999
	A case report: Actinobaculum suis infection associated with formation of pyogranuloma, epididymitis and azoospermia in a boar.	Arnold M, Richard O, Gurtner C, Nathues H, Grahofer A.	BMC Vet Res	10.1186/s12917-020-02680-1	2021
Genetics	Phenotypic, molecular and genomic characterization of Actinobaculum suis isolated from swine in Brazil.	Amigo CR, Moreno LZ, Ferreira TSP, Gomes VTM, Poor AP, de Oliveira CH, Parra BM, Silva APS, Moreno AM.	Anaerobe	10.1016/j.anaerobe.2019.01.004	2019
	Evaluation of urine dipstick tests in experimental porcine urinary tract infection with uropathogenic Escherichia coli.	Staerk K, Jensen LK, Andersen TE.	Sci Rep	10.1038/s41598-023-39239-7	2023
	Detection of Cyclomodulin CNF-1 Toxin-Producing Strains of Escherichia coli in Pig Kidneys at a Slaughterhouse.	Herrera-Vazquez A, Arellano-Aranda R, Hernandez-Cueto D, Rodriguez-Miranda E, Lopez-Briones S, Hernandez-Luna MA.	Microorganisms	10.3390/microorganisms11082065	2023
	Cystitis: significant associations between pathology, histology, and quantitative bacteriology in sows, a cross-sectional study.	Tolstrup LK, Leifsson PS, Guardabassi L, Nielsen JP, Pedersen KS.	Porcine Health Manag	10.1186/s40813-023-00336-8	2023
	Urinary tract infections in culled sows from Greek herds: prevalence and associations between findings of histopathology, bacteriology and urinalysis.	Cernat M, Skampardonis V, Papadopoulos GA, Kroustallas F, Chalvatzi S, Petridou E, Psychas V, Marouda C, Fortomaris P, Leontides L.	Porcine Health Manag	10.1186/s40813-021-00212-3	2021
	Urolithiasis Problems in Finishing Pigs.	Vrielinck J, Janssens GPJ, Chantziaras I, Cools A, Maes D.	Vet Sci	10.3390/vetsci10120688	2023
	A 2-Year Retrospective Case Series on Isolates of the Emerging Pathogen Actinotignum schaalii from a Canadian Tertiary Care Hospital.	Kakodkar P, Hamula C.	Microorganisms	10.3390/microorganisms10081608	2022
Phylogeny	Microbiological Characterization of Actinotignum schaalii Strains Causing Invasive Infections during a Multiyear Period in a Large Canadian Health Care Region.	Lieu A, Mah J, Peirano G, Somayaji R, Church D.	Microbiol Spectr	10.1128/spectrum.03442-22	2022
	Actinobaculum schaalii: A truly emerging pathogen?: Actinobaculum schaalii: un pathogène réellement émergent?	Prigent G, Perillaud C, Amara M, Coutard A, Blanc C, Pangon B.	New Microbes New Infect	10.1016/j.nmni.2015.10.012	2016
Phylogeny	Beyond the usual suspects: emerging uropathogens in the microbiome age.	Moreland RB, Choi BI, Geaman W, Gonzalez C, Hochstedler-Kramer BR, John J, Kaindl J, Kesav N, Lamichhane J, Lucio L, Saxena M, Sharma A, Tinawi L, Vanek ME, Putonti C, Brubaker L, Wolfe AJ.	Front Urol	10.3389/fruro.2023.1212590	2023
	Actinobaculum suis detection using polymerase chain reaction.	Amigo CR, Sena de Gobbi DD, Gomes VT, Perina Ddo P, Nogueira de Lima Filsner PH, Costa BL, Spindola MG, Ferreira TS, Brandao PE, Moreno AM.	ScientificWorldJournal	10.1100/2012/572732	2012
Enzymology	Actinobaculum schaalii causing Fournier's gangrene.	Vanden Bempt I, Van Trappen S, Cleenwerck I, De Vos P, Camps K, Celens A, Van De Vyvere M.	J Clin Microbiol	10.1128/jcm.00272-11	2011
	[The prevalence of Actinobaculum suis in boars of breeding herds in the Omsk region (Russian Federation) by indirect immunofluorescence technique].	Pleschakowa V, Leibold W, Amtsberg G, Konine D, Wendt M.	Dtsch Tierarztl Wochenschr		2004
	Microscopic and ultrastructural lesions of the ureter and renal pelvis in sows with regard to Actinobaculum suis infection.	Woldemeskel M, Drommer W, Wendt M.	J Vet Med A Physiol Pathol Clin Med	10.1046/j.1439-0442.2002.00453.x	2002
Phylogeny	Cultivation of Peptidiphaga gingivicola from subgingival plaque: The first representative of a novel genus of Actinomycetaceae.	Beall CJ, Mokrzan EM, Griffen AL, Leys EJ.	Mol Oral Microbiol	10.1111/omi.12205	2018
	The Pathogenic Role of Actinomyces spp. and Related Organisms in Genitourinary Infections: Discoveries in the New, Modern Diagnostic Era.	Gajdacs M, Urban E.	Antibiotics (Basel)	10.3390/antibiotics9080524	2020
Phylogeny	"Actinobaculum massiliae," a new species causing chronic urinary tract infection.	Greub G, Raoult D.	J Clin Microbiol	10.1128/jcm.40.11.3938-3941.2002	2002
	Assessment of animal diseases caused by bacteria resistant to antimicrobials: Swine.	EFSA Panel on Animal Health and Welfare (AHAW), Nielsen SS, Bicout DJ, Calistri P, Canali E, Drewe JA, Garin-Bastuji B, Gonzales Rojas JL, Gortazar Schmidt C, Herskin M, Michel V, Miranda Chueca MA, Padalino B, Pasquali P, Roberts HC, Sihvonen LH, Spoolder H, Stahl K, Velarde A, Viltrop A, Winckler C, Dewulf J, Guardabassi L, Hilbert F, Mader R, Baldinelli F, Alvarez J.	EFSA J	10.2903/j.efsa.2021.7113	2021
Enzymology	Isolation of Actinobaculum schaalii and Actinobaculum urinale from a patient with chronic renal failure.	Fendukly F, Osterman B.	J Clin Microbiol	10.1128/jcm.43.7.3567-3569.2005	2005
Enzymology	Urosepsis with Actinobaculum schaalii and Aerococcus urinae.	Sturm PD, Van Eijk J, Veltman S, Meuleman E, Schulin T.	J Clin Microbiol	10.1128/jcm.44.2.652-654.2006	2006
	Influence of farm application of oregano on performances of sows.	Amrik B, Bilkei G.	Can Vet J		2004
	The effect of postparturient urogenital diseases on the lifetime reproductive performance of sows.	Glock XT, Bilkei G.	Can Vet J		2005
Genetics	Draft genome sequence of Actinotignum schaalii DSM 15541T: Genetic insights into the lifestyle, cell fitness and virulence.	Yassin AF, Langenberg S, Huntemann M, Clum A, Pillay M, Palaniappan K, Varghese N, Mikhailova N, Mukherjee S, Reddy TBK, Daum C, Shapiro N, Ivanova N, Woyke T, Kyrpides NC.	PLoS One	10.1371/journal.pone.0188914	2017
	Pyelonephritis in slaughter pigs and sows: morphological characterization and aspects of pathogenesis and aetiology.	Isling LK, Aalbaek B, Schroder M, Leifsson PS.	Acta Vet Scand	10.1186/1751-0147-52-48	2010
Pathogenicity	Antimicrobial Resistance in Clostridium and Brachyspira spp. and Other Anaerobes.	Archambault M, Rubin JE.	Microbiol Spectr	10.1128/microbiolspec.arba-0020-2017	2020
	Genomic diversity and relatedness of bifidobacteria isolated from a porcine cecum.	Simpson PJ, Stanton C, Fitzgerald GF, Ross RP.	J Bacteriol	10.1128/jb.185.8.2571-2581.2003	2003
Phylogeny	Quantification of different Eubacterium spp. in human fecal samples with species-specific 16S rRNA-targeted oligonucleotide probes.	Schwiertz A, Le Blay G, Blaut M.	Appl Environ Microbiol	10.1128/aem.66.1.375-382.2000	2000
Genetics	Genome-Based Taxonomic Classification of the Phylum Actinobacteria.	Nouioui I, Carro L, Garcia-Lopez M, Meier-Kolthoff JP, Woyke T, Kyrpides NC, Pukall R, Klenk HP, Goodfellow M, Goker M.	Front Microbiol	10.3389/fmicb.2018.02007	2018
Pathogenicity	In vitro sensitivity of Hungarian Actinobaculum suis strains to selected antimicrobials.	Biksi I, Major A, Fodor L, Szenci O, Vetesi F	Acta Vet Hung	10.1556/AVet.51.2003.1.5	2003
Phylogeny	Phylogenetic evidence for the transfer of Eubacterium suis to the genus Actinomyces as Actinomyces suis comb. nov.	Ludwig W, Kirchhof G, Weizenegger M, Weiss N	Int J Syst Bacteriol	10.1099/00207713-42-1-161	1992
Phylogeny	Actinobaculum urinale sp. nov., from human urine.	Hall V, Collins MD, Hutson RA, Falsen E, Inganas E, Duerden BI.	Int J Syst Evol Microbiol	10.1099/ijs.0.02422-0	2003
Phylogeny	Characterization of some Actinomyces-like isolates from human clinical specimens: reclassification of Actinomyces suis (Soltys and Spratling) as Actinobaculum suis comb. nov. and description of Actinobaculum schaalii sp. nov.	Lawson PA, Falsen E, Akervall E, Vandamme P, Collins MD.	Int J Syst Bacteriol	10.1099/00207713-47-3-899	1997

References

#8985	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 20639
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#23353	Paul A. Lawson, Enevold Falsen, Eva Akervall, Peter Vandamme, Matthew D. Collins: Characterization of Some Actinomyces-Like Isolates from Human Clinical Specimens: Reclassification of Actinomyces suis (Soltys and Spratling) as Actinobaculum suis comb. nov. and Description of Actinobaculum schaalii sp. nov.. IJSEM 47: 899 - 903 1997 ( DOI 10.1099/00207713-47-3-899 , PubMed 9226926 )
#23354	A. F. Yassin, C. Spröer, R. Pukall, M. Sylvester, C. Siering, P. Schumann: Dissection of the genus Actinobaculum: Reclassification of Actinobaculum schaalii Lawson et al. 1997 and Actinobaculum urinale Hall et al. 2003 as Actinotignum schaalii gen. nov., comb. nov. and Actinotignum urinale comb. nov., description of Actinotignum sanguinis sp. nov. and emended descriptions of the genus Actinobaculum and Actinobaculum suis; and re-examination of the culture deposited as Actinobaculum massiliense CCUG 47753T (=DSM 19118T), revealing that it does not represent a strain of this species. IJSEM 65: 615 - 624 2015 ( DOI 10.1099/ijs.0.069294-0 , PubMed 25406238 )
#33054	; Curators of the CIP;
#46981	Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 19206
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#66794	Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg: BRENDA, the ELIXIR core data resource in 2021: new developments and updates. Nucleic Acids Res. 49: D498 - D508 2020 ( DOI 10.1093/nar/gkaa1025 , PubMed 33211880 )
#68379	Automatically annotated from API Coryne .
#68380	Automatically annotated from API rID32A .
#68382	Automatically annotated from API zym .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#123376	Collection of Institut Pasteur ; Curators of the CIP; CIP 105361
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Actinobaculum suis (DSM 20639, ATCC 33144, CCUG 19206)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Culture and growth conditions

Culture medium

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Murein

Metabolite utilization

Metabolite production

Metabolite tests

Enzymes

Pathway annotation

API coryne

API zym

API rID32A

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_900102025

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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