Name: Actinobaculum suis DSM 20639
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 144

Type strain:

Species: Actinobaculum suis

Culture col. no.: DSM 20639, ATCC 33144, CCUG 19206, CIP 105361, LMG 18291, Soltys 50052

Strain history: CIP <- 1997, DSM <- ATCC <- J.G. Wegienek and C.A. Reddy: strain 50052, Corynebacterium suis <- M.A. Soltys

NCBI tax ID(s): 1657 (species)

SI-ID 92512

LMG 18291, ATCC 33144, CCUG 19206, DSM 20639, CIP 105361, BCRC 12980, CCRC 12980

Other strains from Actinobaculum suis

A. suis CCUG 19370
A. suis CCUG 19371
A. suis CCUG 19372
A. suis CCUG 19373
A. suis CCUG 37879, NCTC 10373

Section

Actinobaculum suis DSM 20639 is an anaerobe, psychrophilic, Gram-positive animal pathogen that forms circular colonies and was isolated from cystitis and pyelonephritis of pig.

colony-forming
Gram-positive
rod-shaped
anaerobe
animal pathogen
psychrophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Actinomycetales*
	Family	*Actinomycetaceae*
	Genus	*Actinobaculum*
	Species	**Actinobaculum suis**
	Full Scientific Name (LPSN)	Actinobaculum suis (Wegienek and Reddy 1982 ex Soltys and Spratling 1957) Lawson et al. 1997

	Synonym	Actinomyces suis
	Synonym	Eubacterium suis

Information on morphological and physiological properties Morphology

[Ref.: #23353]	Gram stain	positive
[Ref.: #23354]	Gram stain	positive
[Ref.: #123376]	Gram stain	positive
[Ref.: #69480]	Gram stain	positive Confidence in %99.999

[Ref.: #23353]	Cell length	1.0-3.0 µm
[Ref.: #23354]	Cell length	2.0-3.0 µm

[Ref.: #23353]	Cell width	0.5 µm
[Ref.: #23354]	Cell width	0.3-0.5 µm

[Ref.: #23353]	Cell shape	rod-shaped
[Ref.: #23354]	Cell shape	rod-shaped
[Ref.: #123376]	Cell shape	rod-shaped

[Ref.: #23353]	Motility	no
[Ref.: #23354]	Motility	no
[Ref.: #123376]	Motility	no

[Ref.: #23354]	Type of hemolysis	gamma
[Ref.: #23354]	Colony size	0.3-0.5 mm
[Ref.: #23354]	Colony color	white
[Ref.: #23354]	Colony shape	circular
[Ref.: #23354]	Incubation period	2 days
[Ref.: #23354]	Cultivation medium used	Columbia blood agar

[Ref.: #23354]	Type of hemolysis	gamma
[Ref.: #23354]	Colony size	3.0-5.0 mm
[Ref.: #23354]	Colony color	grey and opaque
[Ref.: #23354]	Incubation period	7 days
[Ref.: #23354]	Cultivation medium used	Columbia blood agar

Information on culture and growth conditions Culture and growth conditions

[Ref.: #23354]

Culture medium

Columbia blood agar

[Ref.: #23354]

Culture medium growth

[Ref.: #23353]

Culture medium

Peptone-yeast extract-starch broth

[Ref.: #23353]

Culture medium growth

[Ref.: #8985]

Culture medium

CHOPPED MEAT MEDIUM WITH CARBOHYDRATES (DSMZ Medium 110)

[Ref.: #8985]

Culture medium growth

[Ref.: #8985]

Culture medium link

Medium recipe at MediaDive

[Ref.: #8985]

Culture medium composition

expand / minimize

[Ref.: #33054]

Culture medium

MEDIUM 243 - for Actinobaculum suis

[Ref.: #33054]

Culture medium growth

[Ref.: #33054]

Culture medium composition

expand / minimize

[Ref.: #123376]

Culture medium

CIP Medium 243

[Ref.: #123376]

Culture medium growth

[Ref.: #123376]

Culture medium link

Medium recipe provided by DSMZ

	Kind of temperature		Temperature
[Ref.: #8985]		growth	37 °C
[Ref.: #23353]	no	growth	<23 °C
[Ref.: #23353]		optimum	37 °C
[Ref.: #23353]		minimum	30 °C
[Ref.: #23353]		maximum	43 °C
[Ref.: #23354]	no	growth	22-23 °C
[Ref.: #23354]		optimum	37 °C
[Ref.: #23354]		growth	30-43 °C
[Ref.: #33054]		growth	37 °C
[Ref.: #46981]		growth	37 °C
[Ref.: #123376]		growth	30-41 °C
[Ref.: #123376]	no	growth	10 °C
[Ref.: #123376]	no	growth	25 °C
[Ref.: #123376]	no	growth	45 °C

[Ref.: #8985]	Temperature range	mesophilic
[Ref.: #23353]	Temperature range	psychrophilic
[Ref.: #23353]	Temperature range	mesophilic
[Ref.: #23353]	Temperature range	thermophilic
[Ref.: #23354]	Temperature range	psychrophilic
[Ref.: #23354]	Temperature range	mesophilic
[Ref.: #33054]	Temperature range	mesophilic
[Ref.: #46981]	Temperature range	mesophilic
[Ref.: #123376]	Temperature range	psychrophilic
[Ref.: #123376]	Temperature range	mesophilic
[Ref.: #123376]	Temperature range	thermophilic

	Kind of pH		pH
[Ref.: #23353]		optimum	7.0-8.0
[Ref.: #23354]		optimum	7.0-8.0
[Ref.: #23353]	no	growth	<5.0
[Ref.: #23354]	no	growth	<5.0

Information on physiology and metabolism Physiology and metabolism

[Ref.: #8985]	Oxygen tolerance	anaerobe
[Ref.: #23353]	Oxygen tolerance	anaerobe
[Ref.: #23354]	Oxygen tolerance	obligate anaerobe
[Ref.: #46981]	Oxygen tolerance	anaerobe
[Ref.: #69480]	Oxygen tolerance	anaerobe Confidence in %97.059

[Ref.: #23354]	Ability of spore formation	no
[Ref.: #69481]	Ability of spore formation	no Confidence in %99
[Ref.: #69480]	Ability of spore formation	no Confidence in %100

	Salt	Tested relation		Salt conc.
[Ref.: #123376]	NaCl		growth	0	%
[Ref.: #123376]	NaCl	no	growth	2	%
[Ref.: #123376]	NaCl	no	growth	4	%
[Ref.: #123376]	NaCl	no	growth	6	%
[Ref.: #123376]	NaCl	no	growth	8	%
[Ref.: #123376]	NaCl	no	growth	10	%

[Ref.: #8985]	Murein short key	A11.53
[Ref.: #8985]	Murein types	A5alpha L-Lys-L-Ala-L-Lys-D-Glu
[Ref.: #23353]	Murein types	A5alpha L-Lys-L-Ala-L-Lys-D-Glu

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #23354]	amygdalin ChEBI	-	builds acid from
[Ref.: #23353]	amygdalin ChEBI	-	fermentation
[Ref.: #23353]	arabinose ChEBI	-	fermentation
[Ref.: #68380]	arginine ChEBI	-	hydrolysis	* from API rID32A
[Ref.: #23354]	cellobiose ChEBI	-	builds acid from
[Ref.: #23353]	cellobiose ChEBI	-	fermentation
[Ref.: #23354]	D-glucose ChEBI	-	builds acid from
[Ref.: #68379]	D-mannitol ChEBI	-	fermentation	* from API Coryne
[Ref.: #68380]	D-mannose ChEBI	-	fermentation	* from API rID32A
[Ref.: #23354]	D-ribose ChEBI	+	builds acid from
[Ref.: #68379]	D-ribose ChEBI	+	fermentation	* from API Coryne
[Ref.: #23354]	D-xylose ChEBI	+	builds acid from
[Ref.: #68379]	D-xylose ChEBI	+	fermentation	* from API Coryne
[Ref.: #23354]	erythritol ChEBI	-	builds acid from
[Ref.: #23353]	erythritol ChEBI	-	fermentation
[Ref.: #23353]	esculin ChEBI	-	fermentation
[Ref.: #23353]	esculin ChEBI	-	hydrolysis
[Ref.: #23354]	esculin ChEBI	-	hydrolysis
[Ref.: #123376]	esculin ChEBI	-	hydrolysis
[Ref.: #68379]	esculin ChEBI	-	hydrolysis	* from API Coryne
[Ref.: #23354]	fructose ChEBI	-	builds acid from
[Ref.: #23353]	fructose ChEBI	-	fermentation
[Ref.: #23354]	galactitol ChEBI	-	builds acid from
[Ref.: #23353]	galactitol ChEBI	-	fermentation
[Ref.: #23354]	galactose ChEBI	-	builds acid from
[Ref.: #23353]	galactose ChEBI	-	fermentation
[Ref.: #23353]	gelatin ChEBI	-	hydrolysis
[Ref.: #23354]	gelatin ChEBI	-	hydrolysis
[Ref.: #68379]	gelatin ChEBI	-	hydrolysis	* from API Coryne
[Ref.: #23353]	glucose ChEBI	-	fermentation
[Ref.: #23354]	glycerol ChEBI	-	builds acid from
[Ref.: #23353]	glycerol ChEBI	-	fermentation
[Ref.: #23354]	glycogen ChEBI	+	builds acid from
[Ref.: #23353]	glycogen ChEBI	+	fermentation
[Ref.: #68379]	glycogen ChEBI	+	fermentation	* from API Coryne
[Ref.: #23354]	hippurate ChEBI	+	hydrolysis
[Ref.: #123376]	hippurate ChEBI	+	hydrolysis
[Ref.: #23354]	inulin ChEBI	-	builds acid from
[Ref.: #23353]	inulin ChEBI	-	fermentation
[Ref.: #23354]	L-arabinose ChEBI	-	builds acid from
[Ref.: #68380]	L-glutamate ChEBI	-	degradation	* from API rID32A
[Ref.: #23353]	lactate ChEBI	-	fermentation
[Ref.: #23354]	lactose ChEBI	-	builds acid from
[Ref.: #23353]	lactose ChEBI	-	fermentation
[Ref.: #68379]	lactose ChEBI	-	fermentation	* from API Coryne
[Ref.: #23354]	maltose ChEBI	+	builds acid from
[Ref.: #23353]	maltose ChEBI	+	fermentation
[Ref.: #68379]	maltose ChEBI	+	fermentation	* from API Coryne
[Ref.: #23354]	mannitol ChEBI	-	builds acid from
[Ref.: #23353]	mannitol ChEBI	-	fermentation
[Ref.: #23354]	mannose ChEBI	-	builds acid from
[Ref.: #23353]	mannose ChEBI	-	fermentation
[Ref.: #23354]	melezitose ChEBI	-	builds acid from
[Ref.: #23353]	melezitose ChEBI	-	fermentation
[Ref.: #23354]	melibiose ChEBI	-	builds acid from
[Ref.: #23353]	melibiose ChEBI	-	fermentation
[Ref.: #23354]	myo-inositol ChEBI	-	builds acid from
[Ref.: #23353]	myo-inositol ChEBI	-	fermentation
[Ref.: #23353]	nitrate ChEBI	-	reduction
[Ref.: #123376]	nitrate ChEBI	-	reduction
[Ref.: #123376]	nitrate ChEBI	+	respiration
[Ref.: #68379]	nitrate ChEBI	-	reduction	* from API Coryne, API rID32A
[Ref.: #123376]	nitrite ChEBI	-	reduction
[Ref.: #23353]	pyruvate ChEBI	-	fermentation
[Ref.: #23354]	raffinose ChEBI	-	builds acid from
[Ref.: #23353]	raffinose ChEBI	-	fermentation
[Ref.: #23354]	rhamnose ChEBI	-	builds acid from
[Ref.: #23353]	rhamnose ChEBI	-	fermentation
[Ref.: #23354]	ribitol ChEBI	-	builds acid from
[Ref.: #23353]	ribitol ChEBI	-	fermentation
[Ref.: #23354]	salicin ChEBI	-	builds acid from
[Ref.: #23353]	salicin ChEBI	-	fermentation
[Ref.: #23354]	sorbitol ChEBI	-	builds acid from
[Ref.: #23353]	sorbitol ChEBI	-	fermentation
[Ref.: #23354]	starch ChEBI	+	builds acid from
[Ref.: #23353]	starch ChEBI	+	fermentation
[Ref.: #23354]	sucrose ChEBI	-	builds acid from
[Ref.: #23353]	sucrose ChEBI	-	fermentation
[Ref.: #68379]	sucrose ChEBI	-	fermentation	* from API Coryne
[Ref.: #23354]	threonine ChEBI	-	builds acid from
[Ref.: #23353]	threonine ChEBI	-	fermentation
[Ref.: #23354]	trehalose ChEBI	-	builds acid from
[Ref.: #23353]	trehalose ChEBI	-	fermentation
[Ref.: #23353]	tryptophan ChEBI	-	energy source
[Ref.: #68380]	tryptophan ChEBI	-	energy source	* from API rID32A
[Ref.: #68379]	urea ChEBI	+	hydrolysis	* from API Coryne, API rID32A
	Only first 10 entries are displayed. Click here to see all.

	Metabolite	Production
[Ref.: #23353]	indole ChEBI	no
[Ref.: #123376]	indole ChEBI	no
[Ref.: #68380]	indole ChEBI	no	* from API rID32A

	Metabolite	Voges-Proskauer-test	Methylred-test	Indole test
[Ref.: #123376]	acetoin ChEBI	-
[Ref.: #123376]	glucose ChEBI		-
[Ref.: #23353]	indole ChEBI			-
[Ref.: #68380]	indole ChEBI			-	* from API rID32A

	Enzyme	Enzyme activity	EC number
[Ref.: #23354]	acid phosphatase	+	3.1.3.2
[Ref.: #68382]	acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #68380]	alanine arylamidase	+	3.4.11.2	* from API rID32A
[Ref.: #123376]	alcohol dehydrogenase	-	1.1.1.1
[Ref.: #23354]	alkaline phosphatase	+	3.1.3.1
[Ref.: #68382]	alkaline phosphatase	+	3.1.3.1	* from API zym, API Coryne
[Ref.: #68380]	alpha-arabinosidase	-	3.2.1.55	* from API rID32A
[Ref.: #23354]	alpha-chymotrypsin	-	3.4.21.1
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #23354]	alpha-fucosidase	-	3.2.1.51
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym, API rID32A
[Ref.: #23354]	alpha-galactosidase	-	3.2.1.22
[Ref.: #68382]	alpha-galactosidase	-	3.2.1.22	* from API zym, API rID32A
[Ref.: #23354]	alpha-glucosidase	+	3.2.1.20
[Ref.: #68382]	alpha-glucosidase	+	3.2.1.20	* from API zym, API rID32A, API Coryne
[Ref.: #23354]	alpha-mannosidase	+	3.2.1.24
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #123376]	amylase	+
[Ref.: #23354]	arginine dihydrolase	-	3.5.3.6
[Ref.: #68380]	arginine dihydrolase	-	3.5.3.6	* from API rID32A
[Ref.: #23354]	beta-galactosidase	-	3.2.1.23
[Ref.: #123376]	beta-galactosidase	-	3.2.1.23
[Ref.: #68382]	beta-galactosidase	-	3.2.1.23	* from API zym, API rID32A, API Coryne
[Ref.: #68380]	beta-Galactosidase 6-phosphate	-		* from API rID32A
[Ref.: #23354]	beta-glucosidase	-	3.2.1.21
[Ref.: #68382]	beta-glucosidase	-	3.2.1.21	* from API zym, API rID32A, API Coryne
[Ref.: #23354]	beta-glucuronidase	+	3.2.1.31
[Ref.: #68382]	beta-glucuronidase	+	3.2.1.31	* from API zym, API rID32A, API Coryne
[Ref.: #123376]	caseinase	-	3.4.21.50
[Ref.: #23354]	catalase	-	1.11.1.6
[Ref.: #123376]	catalase	-	1.11.1.6
[Ref.: #68379]	catalase	-	1.11.1.6	* from API Coryne
[Ref.: #23354]	cystine arylamidase	-	3.4.11.3
[Ref.: #68382]	cystine arylamidase	+	3.4.11.3	* from API zym
[Ref.: #23354]	cytochrome oxidase	-	1.9.3.1
[Ref.: #123376]	DNase	-
[Ref.: #23354]	esterase (C 4)	-
[Ref.: #68382]	esterase (C 4)	+		* from API zym
[Ref.: #23354]	esterase lipase (C 8)	+
[Ref.: #68382]	esterase lipase (C 8)	+		* from API zym
[Ref.: #123376]	gamma-glutamyltransferase	-	2.3.2.2
[Ref.: #123376]	gelatinase	-
[Ref.: #68379]	gelatinase	-		* from API Coryne
[Ref.: #68380]	glutamate decarboxylase	-	4.1.1.15	* from API rID32A
[Ref.: #68380]	glutamyl-glutamate arylamidase	-		* from API rID32A
[Ref.: #68380]	glycin arylamidase	+		* from API rID32A
[Ref.: #68380]	histidine arylamidase	+		* from API rID32A
[Ref.: #123376]	lecithinase	-
[Ref.: #23354]	leucine arylamidase	+	3.4.11.1
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym, API rID32A
[Ref.: #68380]	leucyl glycin arylamidase	+	3.4.11.1	* from API rID32A
[Ref.: #123376]	lipase	-
[Ref.: #23354]	lipase (C 14)	-
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #123376]	lysine decarboxylase	-	4.1.1.18
[Ref.: #23354]	N-acetyl-beta-glucosaminidase	+	3.2.1.52
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API zym, API rID32A, API Coryne
[Ref.: #23354]	naphthol-AS-BI-phosphohydrolase	+
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	+		* from API zym
[Ref.: #123376]	ornithine decarboxylase	-	4.1.1.17
[Ref.: #123376]	oxidase	-
[Ref.: #123376]	phenylalanine ammonia-lyase	-	4.3.1.24
[Ref.: #68380]	phenylalanine arylamidase	+		* from API rID32A
[Ref.: #68380]	proline-arylamidase	+	3.4.11.5	* from API rID32A
[Ref.: #123376]	protease	-
[Ref.: #23354]	pyrazinamidase	-	3.5.1.B15
[Ref.: #68379]	pyrazinamidase	-	3.5.1.B15	* from API Coryne
[Ref.: #23354]	pyrrolidonyl arylamidase	+	3.4.19.3
[Ref.: #68380]	pyrrolidonyl arylamidase	+	3.4.19.3	* from API rID32A, API Coryne
[Ref.: #68380]	serine arylamidase	+		* from API rID32A
[Ref.: #23354]	trypsin	-	3.4.21.4
[Ref.: #68382]	trypsin	-	3.4.21.4	* from API zym
[Ref.: #23353]	tryptophan deaminase	-	4.1.99.1
[Ref.: #123376]	tryptophan deaminase	+
[Ref.: #68380]	tryptophan deaminase	-	4.1.99.1	* from API rID32A
[Ref.: #123376]	tween esterase	-
[Ref.: #68380]	tyrosine arylamidase	+		* from API rID32A
[Ref.: #23353]	urease	+	3.5.1.5
[Ref.: #123376]	urease	+	3.5.1.5
[Ref.: #68380]	urease	+	3.5.1.5	* from API rID32A, API Coryne
[Ref.: #23354]	valine arylamidase	-
[Ref.: #68382]	valine arylamidase	-		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® Coryne:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Reduction of nitrateNIT	PyrazinamidasePYZ	Pyrrolidonyl arylamidasePYRA	Alkaline phosphatasePAL	beta-Glucuronidasebeta GUR	beta-Galactosidasebeta GAL	alpha-Glucosidasealpha GLU	N-Acetyl-beta-Glucosidasebeta NAG	Esculin hydrolysis/beta-GlucosidaseESC	Urease/urea hydrolysisURE	Gelatinase/gelatin hydrolysisGEL	Control fermentationControl	Fermentation of D-glucoseGLU	Fermentation of D-riboseRIB	Fermentation of D-xyloseXYL	Fermentation of D-mannitolMAN	Fermentation of maltoseMAL	Fermentation of lactoseLAC	Fermentation of sucroseSAC	Fermentation of glycogenGLYG	CatalaseCAT
[Ref.: #46981]	818	-	-	+	+	+	-	+	-	-	+	-	-	not determinedn.d.	+	+	-	+	-	-	+	-

API® rID32A:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Urease/urea hydrolysisURE	Arginine dihydrolaseADH (Arg)	alpha-Galactosidasealpha GAL	beta-Galactosidasebeta GAL	beta-Galactosidase 6-phosphatebeta GP	alpha-Glucosidasealpha GLU	beta-Glucosidasebeta GLU	alpha-Arabinosidasealpha ARA	beta-Glucuronidasebeta GUR	beta-N-Acetyl-beta-glucosaminidasebeta NAG	Fermentation of D-mannoseMNE	Fermentation of raffinoseRAF	Glutamate decarboxylaseGDC	alpha-Fucosidasealpha FUC	Reduction of nitrateNIT	Indole productionIND	Alkaline phosphatasePAL	L-arginine arylamidaseArgA	Proline arylamidaseProA	Leucyl glycin arylamidaseLGA	Phenylalanine arylamidasePheA	Leucine arylamidaseLeuA	Pyrrolidonyl arylamidasePyrA	Tyrosine arylamidaseTyrA	Alanine arylamidaseAlaA	Glycin arylamidaseGlyA	Histidine arylamidaseHisA	Glutamyl-glutamate arylamidaseGGA	Serine arylamidaseSerA
[Ref.: #8985]	12728	+	-	-	-	-	+	-	-	+	-	-	+/-	-	-	-	-	+/-	+/-	+	+	+	+	+	+	+	+	+	-	+

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #123376]	8646	-	+	+	+	-	+	-	+	-	-	+	+	-	-	+	+	-	-	-	-

	Pathway	Enzyme coverage	Annotated reactions
	Pathway annotation	Computationally determined by
[Ref.: #66794]	formaldehyde oxidation	100	3 of 3
[Ref.: #66794]	anapleurotic synthesis of oxalacetate	100	1 of 1
[Ref.: #66794]	UDP-GlcNAc biosynthesis	100	3 of 3
[Ref.: #66794]	folate polyglutamylation	100	1 of 1
[Ref.: #66794]	CDP-diacylglycerol biosynthesis	100	2 of 2
[Ref.: #66794]	ppGpp biosynthesis	100	4 of 4
[Ref.: #66794]	L-lactaldehyde degradation	100	3 of 3
[Ref.: #66794]	coenzyme A metabolism	100	4 of 4
[Ref.: #66794]	starch degradation	90	9 of 10
[Ref.: #66794]	chorismate metabolism	88.89	8 of 9
[Ref.: #66794]	peptidoglycan biosynthesis	86.67	13 of 15
[Ref.: #66794]	threonine metabolism	80	8 of 10
[Ref.: #66794]	Entner Doudoroff pathway	80	8 of 10
[Ref.: #66794]	glycogen metabolism	80	4 of 5
[Ref.: #66794]	valine metabolism	77.78	7 of 9
[Ref.: #66794]	palmitate biosynthesis	77.27	17 of 22
[Ref.: #66794]	phenylalanine metabolism	76.92	10 of 13
[Ref.: #66794]	pyrimidine metabolism	75.56	34 of 45
[Ref.: #66794]	ketogluconate metabolism	75	6 of 8
[Ref.: #66794]	acetate fermentation	75	3 of 4
[Ref.: #66794]	gluconeogenesis	75	6 of 8
[Ref.: #66794]	C4 and CAM-carbon fixation	75	6 of 8
[Ref.: #66794]	sulfopterin metabolism	75	3 of 4
[Ref.: #66794]	isoleucine metabolism	75	6 of 8
[Ref.: #66794]	photosynthesis	71.43	10 of 14
[Ref.: #66794]	ubiquinone biosynthesis	71.43	5 of 7
[Ref.: #66794]	leucine metabolism	69.23	9 of 13
[Ref.: #66794]	purine metabolism	67.02	63 of 94
[Ref.: #66794]	d-mannose degradation	66.67	6 of 9
[Ref.: #66794]	acetoin degradation	66.67	2 of 3
[Ref.: #66794]	aspartate and asparagine metabolism	66.67	6 of 9
[Ref.: #66794]	NAD metabolism	66.67	12 of 18
[Ref.: #66794]	octane oxidation	66.67	2 of 3
[Ref.: #66794]	glycolysis	64.71	11 of 17
[Ref.: #66794]	pentose phosphate pathway	63.64	7 of 11
[Ref.: #66794]	dTDPLrhamnose biosynthesis	62.5	5 of 8
[Ref.: #66794]	6-hydroxymethyl-dihydropterin diphosphate biosynthesis	62.5	5 of 8
[Ref.: #66794]	degradation of sugar alcohols	62.5	10 of 16
[Ref.: #66794]	vitamin B1 metabolism	61.54	8 of 13
[Ref.: #66794]	factor 420 biosynthesis	60	3 of 5
[Ref.: #66794]	lipoate biosynthesis	60	3 of 5
[Ref.: #66794]	metabolism of amino sugars and derivatives	60	3 of 5
[Ref.: #66794]	degradation of aromatic, nitrogen containing compounds	58.33	7 of 12
[Ref.: #66794]	reductive acetyl coenzyme A pathway	57.14	4 of 7
[Ref.: #66794]	benzoyl-CoA degradation	57.14	4 of 7
[Ref.: #66794]	oxidative phosphorylation	57.14	52 of 91
[Ref.: #66794]	mevalonate metabolism	57.14	4 of 7
[Ref.: #66794]	degradation of sugar acids	56	14 of 25
[Ref.: #66794]	serine metabolism	55.56	5 of 9
[Ref.: #66794]	CO2 fixation in Crenarchaeota	55.56	5 of 9
[Ref.: #66794]	degradation of hexoses	55.56	10 of 18
[Ref.: #66794]	d-xylose degradation	54.55	6 of 11
[Ref.: #66794]	metabolism of disaccharids	54.55	6 of 11
[Ref.: #66794]	urea cycle	53.85	7 of 13
[Ref.: #66794]	degradation of pentoses	53.57	15 of 28
[Ref.: #66794]	histidine metabolism	51.72	15 of 29
[Ref.: #66794]	adipate degradation	50	1 of 2
[Ref.: #66794]	ethanol fermentation	50	1 of 2
[Ref.: #66794]	glutathione metabolism	50	7 of 14
[Ref.: #66794]	suberin monomers biosynthesis	50	1 of 2
[Ref.: #66794]	cis-vaccenate biosynthesis	50	1 of 2
[Ref.: #66794]	butanoate fermentation	50	2 of 4
[Ref.: #66794]	glycogen biosynthesis	50	2 of 4
[Ref.: #66794]	cysteine metabolism	50	9 of 18
[Ref.: #66794]	pantothenate biosynthesis	50	3 of 6
[Ref.: #66794]	alanine metabolism	48.28	14 of 29
[Ref.: #66794]	tryptophan metabolism	47.37	18 of 38
[Ref.: #66794]	glutamate and glutamine metabolism	46.43	13 of 28
[Ref.: #66794]	methionine metabolism	46.15	12 of 26
[Ref.: #66794]	proline metabolism	45.45	5 of 11
[Ref.: #66794]	non-pathway related	44.74	17 of 38
[Ref.: #66794]	tetrahydrofolate metabolism	42.86	6 of 14
[Ref.: #66794]	propanol degradation	42.86	3 of 7
[Ref.: #66794]	heme metabolism	42.86	6 of 14
[Ref.: #66794]	cardiolipin biosynthesis	42.86	3 of 7
[Ref.: #66794]	lipid metabolism	41.94	13 of 31
[Ref.: #66794]	arginine metabolism	41.67	10 of 24
[Ref.: #66794]	glycine metabolism	40	4 of 10
[Ref.: #66794]	isoprenoid biosynthesis	38.46	10 of 26
[Ref.: #66794]	carnitine metabolism	37.5	3 of 8
[Ref.: #66794]	tyrosine metabolism	35.71	5 of 14
[Ref.: #66794]	citric acid cycle	35.71	5 of 14
[Ref.: #66794]	glycolate and glyoxylate degradation	33.33	2 of 6
[Ref.: #66794]	IAA biosynthesis	33.33	1 of 3
[Ref.: #66794]	sphingosine metabolism	33.33	2 of 6
[Ref.: #66794]	lysine metabolism	33.33	14 of 42
[Ref.: #66794]	flavin biosynthesis	33.33	5 of 15
[Ref.: #66794]	acetyl CoA biosynthesis	33.33	1 of 3
[Ref.: #66794]	lipid A biosynthesis	33.33	3 of 9
[Ref.: #66794]	sulfoquinovose degradation	33.33	1 of 3
[Ref.: #66794]	selenocysteine biosynthesis	33.33	2 of 6
[Ref.: #66794]	myo-inositol biosynthesis	30	3 of 10
[Ref.: #66794]	vitamin B6 metabolism	27.27	3 of 11
[Ref.: #66794]	dolichyl-diphosphooligosaccharide biosynthesis	27.27	3 of 11
[Ref.: #66794]	toluene degradation	25	1 of 4
[Ref.: #66794]	cyclohexanol degradation	25	1 of 4
[Ref.: #66794]	lactate fermentation	25	1 of 4
[Ref.: #66794]	CMP-KDO biosynthesis	25	1 of 4
[Ref.: #66794]	androgen and estrogen metabolism	25	4 of 16
[Ref.: #66794]	ascorbate metabolism	22.73	5 of 22
[Ref.: #66794]	nitrate assimilation	22.22	2 of 9
[Ref.: #66794]	molybdenum cofactor biosynthesis	22.22	2 of 9
[Ref.: #66794]	polyamine pathway	21.74	5 of 23
		Only first 10 entries are displayed. Click here to see all.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #8985]	Sample type/isolated from	cystitis and pyelonephritis of pig

[Ref.: #23354]	Sample type/isolated from	from swine

[Ref.: #46981]	Sample type/isolated from	Swine cystitis and pyelonephritis

[Ref.: #123376]	Sample type/isolated from	Animal, Swine, cystitis
* marker position based on {}

Isolation sources categories

#Infection	#Disease	-
#Host Body-Site	#Urogenital tract	-
#Host	#Mammals	#Suidae (Pig,Swine)

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence S83623 (>99% sequence identity) for Actinobaculum suis subclade from Microbeatlas

Aquatic Samples	15
Soil Samples	21
Animal Samples	399
Plant Samples	7
Total Samples	442

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #8985]	Pathogenicity (animal)	yes
[Ref.: #8985]	Biosafety level	2	Risk group (German classification) According to TRBA 466
[Ref.: #123376]	Biosafety level	1	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #8985]	Actinobaculum suis strain DSM 20639 16S ribosomal RNA gene, partial sequence	S83623	1506	ENA	1657 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Actinobaculum suis DSM 20639	GCA_900102025	contig	GenBank	1657 tax ID	*
[Ref.: #66792]	Actinobaculum suis strain DSM 20639	1657.8	wgs	PATRIC	1657 tax ID	*
[Ref.: #66792]	Actinobaculum suis DSM 20639	2675903157	draft	JGI IMG/M	1657 tax ID	*

[Ref.: #8985]	GC-content	55.0 mol%	thermal denaturation, midpoint method (Tm)
[Ref.: #23353]	GC-content	55.0 mol%	Thermal denaturation, fluorometry

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Actinobaculum suis strain DSM 20639 PATRIC: 1657.3
[Ref.: #69481]	spore-forming	no	99	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Actinobaculum suis strain DSM 20639 PATRIC: 1657.8
[Ref.: #69480]	motile	no	94.003	no
[Ref.: #69480]	gram-positive	yes	92.975	yes
[Ref.: #69480]	anaerobic	yes	69.559	yes
[Ref.: #69480]	aerobic	no	94.723	yes
[Ref.: #69480]	halophile	no	71.274	no
[Ref.: #69480]	spore-forming	no	96.715	yes
[Ref.: #69480]	thermophile	no	92.786	no
[Ref.: #69480]	glucose-util	yes	90.647	no
[Ref.: #69480]	flagellated	no	96.987	yes
[Ref.: #69480]	glucose-ferment	yes	67.286	yes

Availability in culture collections External links

[Ref.: #8985]

Culture collection no.

DSM 20639, ATCC 33144, CCUG 19206, CIP 105361, LMG 18291, Soltys 50052

[Ref.: #69827]

SI-ID 92512

Literature:

Topic	Title	Authors	Journal	DOI	Year
Pathogenicity	In vitro sensitivity of Hungarian Actinobaculum suis strains to selected antimicrobials.	Biksi I, Major A, Fodor L, Szenci O, Vetesi F	Acta Vet Hung	10.1556/AVet.51.2003.1.5	2003	*
Phylogeny	Phylogenetic evidence for the transfer of Eubacterium suis to the genus Actinomyces as Actinomyces suis comb. nov.	Ludwig W, Kirchhof G, Weizenegger M, Weiss N	Int J Syst Bacteriol	10.1099/00207713-42-1-161	1992	*

References

#8985

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 20639

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#23353

Paul A. Lawson, Enevold Falsen, Eva Akervall, Peter Vandamme, Matthew D. Collins: Characterization of Some Actinomyces-Like Isolates from Human Clinical Specimens: Reclassification of Actinomyces suis (Soltys and Spratling) as Actinobaculum suis comb. nov. and Description of Actinobaculum schaalii sp. nov.. IJSEM 47: 899 - 903 1997 ( DOI 10.1099/00207713-47-3-899 , PubMed 9226926 )

#23354

A. F. Yassin, C. Spröer, R. Pukall, M. Sylvester, C. Siering, P. Schumann: Dissection of the genus Actinobaculum: Reclassification of Actinobaculum schaalii Lawson et al. 1997 and Actinobaculum urinale Hall et al. 2003 as Actinotignum schaalii gen. nov., comb. nov. and Actinotignum urinale comb. nov., description of Actinotignum sanguinis sp. nov. and emended descriptions of the genus Actinobaculum and Actinobaculum suis; and re-examination of the culture deposited as Actinobaculum massiliense CCUG 47753T (=DSM 19118T), revealing that it does not represent a strain of this species. IJSEM 65: 615 - 624 2015 ( DOI 10.1099/ijs.0.069294-0 , PubMed 25406238 )

#33054 ; Curators of the CIP;
#46981 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 19206

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#66794

Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg: BRENDA, the ELIXIR core data resource in 2021: new developments and updates. Nucleic Acids Res. 49: D498 - D508 2020 ( DOI 10.1093/nar/gkaa1025 , PubMed 33211880 )

#68379

Automatically annotated from API Coryne .

#68380

Automatically annotated from API rID32A .

#68382

Automatically annotated from API zym .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#69827

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID92512.1 )

#123376 Collection of Institut Pasteur ; Curators of the CIP; CIP 105361
* These data were automatically processed and therefore are not curated

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Actinobaculum suis strain DSM 20639

Actinobaculum suis strain DSM 20639

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