Myroides odoratimimus (CCUG 10230)

Name: Myroides odoratimimus (CCUG 10230)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 142065

Type strain

Culture col. no. CCUG 10230

NCBI tax ID(s) 883150 76832

Special Collections CCUG

Myroides odoratimimus CCUG 10230 is a bacterium that was isolated from Human wound,68-yr-old man.

genome sequence Bacteria

Name and taxonomic classification

Culture Collection Numbers

CCUG 10230

@ref 20215

Last LPSN update 2026-05-29 08:40:06

Domain Bacteria

Phylum Bacteroidota

Class Flavobacteriia

Order Flavobacteriales

Family Flavobacteriaceae

Genus Myroides

Species Myroides odoratimimus

Full scientific name Myroides odoratimimus Vancanneyt et al. 1996

BacDive ID	Other strains from **Myroides odoratimimus** (64)	Type strain
135149	M. odoratimimus CIP 103075, LMG 14974
135154	M. odoratimimus CIP 103073, LMG 14973, ATCC 700471
135504	M. odoratimimus CIP 100062, LMG 14956
136157	M. odoratimimus CIP 103058, LMG 14969
136160	M. odoratimimus CIP 103057, LMG 14968
136162	M. odoratimimus CIP 103059, LMG 14970
137025	M. odoratimimus CIP 109984, Van Reynan
137148	M. odoratimimus CIP 78.62, LMG 14981
137835	M. odoratimimus CIP 101113, LMG 14961, ATCC 700470
139002	M. odoratimimus 15l, CIP 104123
139943	M. odoratimimus DSM 100221
139944	M. odoratimimus DSM 100223
139945	M. odoratimimus DSM 100271
139946	M. odoratimimus DSM 100469
139947	M. odoratimimus DSM 100471
139948	M. odoratimimus DSM 100472
139949	M. odoratimimus DSM 100473
139950	M. odoratimimus DSM 100474
139951	M. odoratimimus DSM 100475
139952	M. odoratimimus DSM 100476
139953	M. odoratimimus DSM 100477
139954	M. odoratimimus DSM 100677
139955	M. odoratimimus DSM 100679
139956	M. odoratimimus DSM 100682
139957	M. odoratimimus DSM 100683
139958	M. odoratimimus DSM 100819
139959	M. odoratimimus DSM 100820
139960	M. odoratimimus DSM 100821
139961	M. odoratimimus DSM 100840
139962	M. odoratimimus DSM 100841
139963	M. odoratimimus DSM 100843
139964	M. odoratimimus DSM 100844
139965	M. odoratimimus DSM 100859
139966	M. odoratimimus DSM 100863
139967	M. odoratimimus DSM 100864
139968	M. odoratimimus DSM 100865
139969	M. odoratimimus DSM 100866
139970	M. odoratimimus DSM 100867
139971	M. odoratimimus DSM 100889
139972	M. odoratimimus DSM 100891
139973	M. odoratimimus DSM 100893
139974	M. odoratimimus DSM 100894
139975	M. odoratimimus DSM 100895
139976	M. odoratimimus DSM 100896
139977	M. odoratimimus DSM 100897
139978	M. odoratimimus DSM 100898
139979	M. odoratimimus DSM 100899
139980	M. odoratimimus 40[81245/7], 40[8124517], 100920, DSM 100920
139981	M. odoratimimus DSM 101069
139982	M. odoratimimus DSM 101503
139983	M. odoratimimus DSM 101504
139984	M. odoratimimus DSM 101506
139985	M. odoratimimus DSM 101507
141266	M. odoratimimus CCUG 469 A, LMG 12835
141620	M. odoratimimus CCUG 3837, LMG 12836
142500	M. odoratimimus CCUG 12700
142542	M. odoratimimus CCUG 12901
143976	M. odoratimimus CCUG 22181, LMG 12840
144104	M. odoratimimus CCUG 23074
150602	M. odoratimimus CCUG 41717
150895	M. odoratimimus CCUG 42655
153236	M. odoratimimus CCUG 48840
155055	M. odoratimimus CCUG 56315
175225	M. odoratimimus 116873, DSM 116873

Morphology

Cell morphology

@ref	Gram stain	Confidence
125438	negative	98.391

Culture and growth conditions

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125439	facultative anaerobe	92.974

Spore formation

@ref	Spore formation	Confidence
125438		90.787

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
68369	17128 ChEBI	adipate	-	assimilation	from API 20NE
68369	29016 ChEBI	arginine	-	hydrolysis	from API 20NE
68369	17634 ChEBI	D-glucose	-	assimilation	from API 20NE
68369	17634 ChEBI	D-glucose	-	fermentation	from API 20NE
68369	16899 ChEBI	D-mannitol	-	assimilation	from API 20NE
68369	16024 ChEBI	D-mannose	-	assimilation	from API 20NE
68369	27689 ChEBI	decanoate	-	assimilation	from API 20NE
68369	4853 ChEBI	esculin	-	hydrolysis	from API 20NE
68369	5291 ChEBI	gelatin	+	hydrolysis	from API 20NE
68369	24265 ChEBI	gluconate	-	assimilation	from API 20NE
68369	30849 ChEBI	L-arabinose	-	assimilation	from API 20NE
68369	25115 ChEBI	malate	-	assimilation	from API 20NE
68369	17306 ChEBI	maltose	-	assimilation	from API 20NE
68369	59640 ChEBI	N-acetylglucosamine	-	assimilation	from API 20NE
68369	17632 ChEBI	nitrate	-	reduction	from API 20NE
68369	27897 ChEBI	tryptophan	-	energy source	from API 20NE
68369	16199 ChEBI	urea	+	hydrolysis	from API 20NE

Metabolite production

@ref	Chebi-ID	Metabolite	Production
68369	35581 ChEBI	indole		from API 20NE

Metabolite tests

@ref	Chebi-ID	Metabolite	Indole test
68369	35581 ChEBI	indole	-	from API 20NE

Enzymes

@ref	Value	Activity	Ec
68382	acid phosphatase	+	3.1.3.2	from API zym
68382	alkaline phosphatase	+	3.1.3.1	from API zym
68382	alpha-chymotrypsin	-	3.4.21.1	from API zym
68382	alpha-fucosidase	-	3.2.1.51	from API zym
68382	alpha-galactosidase	-	3.2.1.22	from API zym
68382	alpha-glucosidase	-	3.2.1.20	from API zym
68382	alpha-mannosidase	-	3.2.1.24	from API zym
68369	arginine dihydrolase	-	3.5.3.6	from API 20NE
68382	beta-galactosidase	-	3.2.1.23	from API zym
68382	beta-glucosidase	-	3.2.1.21	from API zym
68369	beta-glucosidase	-	3.2.1.21	from API 20NE
68382	beta-glucuronidase	-	3.2.1.31	from API zym
68382	cystine arylamidase	-	3.4.11.3	from API zym
68369	cytochrome oxidase	+	1.9.3.1	from API 20NE
68382	esterase (C 4)	+		from API zym
68382	esterase lipase (C 8)	+		from API zym
68369	gelatinase	+		from API 20NE
68382	leucine arylamidase	+	3.4.11.1	from API zym
68382	lipase (C 14)	-		from API zym
68382	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API zym
68382	naphthol-AS-BI-phosphohydrolase	+		from API zym
68382	trypsin	-	3.4.21.4	from API zym
68369	urease	+	3.5.1.5	from API 20NE
68382	valine arylamidase	-		from API zym

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
45294	-	+	+	+	-	+	-	-	-	-	+	+	-	-	-	-	-	-	-	-

API 20NE

@ref	Reduction of nitratesNO3	TRP	GLU_ Ferm	ADH (Arg)	URE	ESC	GEL	PNPG	GLU_ Assim	ARA	MNE	MAN	NAG	MAL	GNT	CAP	ADI	MLT	CIT	PAC	OX
45294	-	-	-	-	+	-	+	-	-	-	-	-	-	-	-	-	-	-	-	-	+

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host	#Human	#Male
#Host Body-Site	#Other	#Wound
#Infection	#Patient	-

Isolation

@ref	Sample type	Host species	Sampling date	Geographic location	Country	Country ISO 3 Code	Continent
45294	Human wound,68-yr-old man	Homo sapiens	1980-10-06	Göteborg	Sweden	SWE	Europe

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	Myro_odor_CCUG_10230_V2 assembly for Myroides odoratimimus CCUG 10230	scaffold	GCA_000242075	883150.3	2513237331	883150	71.68

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Myro_odor_CCUG_10230_V2 assembly for Myroides odoratimimus CCUG 10230
BV-BRC: 883150.3

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	facultative anaerobe	92.97	no
125439	motility	BacteriaNetⓘ	yes	58.62	no
125439	gram_stain	BacteriaNetⓘ	negative	57.16	no
125439	spore_formation	BacteriaNetⓘ	yes	54.26	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Myroides odoratimimus CCUG 10230 CCUG 10230
NCBI: GCA_000242075.2

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	98.39	no
125438	anaerobic	anaerobicⓘ	no	96.11	no
125438	aerobic	aerobicⓘ	yes	85.52	no
125438	spore-forming	spore-formingⓘ	no	90.79	no
125438	thermophilic	thermophileⓘ	no	95.22	no
125438	flagellated	motile2+ⓘ	no	88.00	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Pathogenicity	Antibiotic resistance mechanisms of Myroides sp.	Hu SH, Yuan SX, Qu H, Jiang T, Zhou YJ, Wang MX, Ming DS.	J Zhejiang Univ Sci B	10.1631/jzus.b1500068	2016
Genetics	Comparative genomic analysis of Myroides odoratimimus isolates.	Hu S, Cao L, Wu Y, Zhou Y, Jiang T, Wang L, Wang Q, Ming D, Chen S, Wang M	Microbiologyopen	10.1002/mbo3.634	2018

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#45294	Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 10230
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#68369	Automatically annotated from API 20NE .
#68382	Automatically annotated from API zym .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .

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Myroides odoratimimus (CCUG 10230)

Name and taxonomic classification

Culture Collection Numbers

Morphology

Cell morphology

Culture and growth conditions

Physiology and metabolism

Oxygen tolerance

Spore formation

Metabolite utilization

Metabolite production

Metabolite tests

Enzymes

API zym

API 20NE

Isolation, sampling and environmental information

Isolation source categories

Isolation

Interaction and safety

Sequence information

Genome sequences

Genome browser: GCA_000242075

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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