Name: Myroides odoratimimus CIP 101113
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 137835

Type strain:

Species: Myroides odoratimimus

Culture col. no.: CIP 101113, LMG 14961, ATCC 700470

Strain history: CIP <- 1984, Lab. Ident. Inst. Pasteur, Paris, France: strain 734-84 , Flavobactrium odoratum <- Bondy Hosp., Bondy, France

NCBI tax ID(s): 883154 (strain), 76832 (species)

SI-ID 7908

LMG 14961, CIP 101113, ATCC 700470

Other strains from Myroides odoratimimus

Section

Myroides odoratimimus CIP 101113 is an obligate aerobe, mesophilic, Gram-negative bacterium of the family Flavobacteriaceae.

Gram-negative
mesophilic
obligate aerobe
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacteroidota*
	Class	*Flavobacteriia*
	Order	*Flavobacteriales*
	Family	*Flavobacteriaceae*
	Genus	*Myroides*
	Species	**Myroides odoratimimus**
	Full Scientific Name (LPSN)	Myroides odoratimimus Vancanneyt et al. 1996

Information on morphological and physiological properties Morphology

[Ref.: #38781]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %99.999

[Ref.: #38781]	Cell shape	rod-shaped

[Ref.: #38781]	Motility	no

Information on culture and growth conditions Culture and growth conditions

[Ref.: #38781]

Culture medium

MEDIUM 3 - Columbia agar

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Culture medium growth

[Ref.: #38781]

Culture medium composition

expand / minimize

[Ref.: #38781]

Culture medium

CIP Medium 3

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Culture medium growth

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Culture medium link

Medium recipe provided by DSMZ

	Kind of temperature		Temperature
[Ref.: #38781]		growth	30 °C
[Ref.: #38781]		growth	15-37 °C
[Ref.: #38781]	no	growth	5 °C
[Ref.: #38781]	no	growth	41 °C
[Ref.: #38781]	no	growth	45 °C

[Ref.: #38781]	Temperature range	mesophilic
[Ref.: #38781]	Temperature range	psychrophilic
[Ref.: #38781]	Temperature range	thermophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #38781]

Oxygen tolerance

obligate aerobe

[Ref.: #69480]

Ability of spore formation

no Confidence in %99.994

	Salt	Tested relation		Salt conc.
[Ref.: #38781]	NaCl		growth	0-6	%
[Ref.: #38781]	NaCl	no	growth	8	%
[Ref.: #38781]	NaCl	no	growth	10	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #38781]	citrate ChEBI	-	carbon source
[Ref.: #38781]	esculin ChEBI	-	hydrolysis
[Ref.: #38781]	hippurate ChEBI	-	hydrolysis
[Ref.: #38781]	malonate ChEBI	-	assimilation
[Ref.: #38781]	nitrate ChEBI	-	builds gas from
[Ref.: #38781]	nitrate ChEBI	-	reduction
[Ref.: #38781]	nitrite ChEBI	+	builds gas from
[Ref.: #38781]	nitrite ChEBI	+	reduction

	Antibiotica	Metabolite	Antibiotic sensitivity	Antibiotic resistance
[Ref.: #38781]		0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)	no	yes

	Metabolite production	Metabolite	Production
[Ref.: #38781]		indole ChEBI	no

	Physiological tests	Metabolite	Voges-Proskauer-test	Methylred-test
[Ref.: #38781]		acetoin ChEBI	-
[Ref.: #38781]		glucose ChEBI		-

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #38781]	alcohol dehydrogenase	-	1.1.1.1
[Ref.: #68382]	alkaline phosphatase	+	3.1.3.1	* from API zym
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	-	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	-	3.2.1.20	* from API zym
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #38781]	amylase	-
[Ref.: #38781]	beta-galactosidase	-	3.2.1.23
[Ref.: #68382]	beta-galactosidase	-	3.2.1.23	* from API zym
[Ref.: #68382]	beta-glucosidase	-	3.2.1.21	* from API zym
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym
[Ref.: #38781]	caseinase	+	3.4.21.50
[Ref.: #38781]	catalase	+	1.11.1.6
[Ref.: #68382]	cystine arylamidase	-	3.4.11.3	* from API zym
[Ref.: #38781]	DNase	+
[Ref.: #68382]	esterase (C 4)	+		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	+		* from API zym
[Ref.: #38781]	gamma-glutamyltransferase	+	2.3.2.2
[Ref.: #38781]	gelatinase	+
[Ref.: #38781]	lecithinase	-
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #38781]	lipase	-
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #38781]	lysine decarboxylase	-	4.1.1.18
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	+		* from API zym
[Ref.: #38781]	ornithine decarboxylase	-	4.1.1.17
[Ref.: #38781]	oxidase	+
[Ref.: #38781]	phenylalanine ammonia-lyase	-	4.3.1.24
[Ref.: #68382]	trypsin	-	3.4.21.4	* from API zym
[Ref.: #38781]	tryptophan deaminase	-
[Ref.: #38781]	tween esterase	+
[Ref.: #38781]	urease	+	3.5.1.5
[Ref.: #68382]	valine arylamidase	-		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® Biotype100:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	ControlQ	D-glucose as carbon sourceGLU	D-fructose as carbon sourceFRU	D-galactose as carbon sourceGAL	D-trehalose as carbon sourceTRE	D-mannose as carbon sourceMNE	L-sorbose as carbon sourceSBE	D-melibiose as carbon sourceMEL	sucrose as carbon sourceSAC	D-raffinose as carbon sourceRAF	maltotriose as carbon sourceMTE	maltose as carbon sourceMAL	lactose as carbon sourceLAC	lactulose as carbon sourceLTE	1-O-methyl-beta-galactopyranoside as carbon sourceMbGa	1-O-methyl-alpha-galactopyranoside as carbon sourceMaGa	D-cellobiose as carbon sourceCEL	gentiobiose as carbon sourceGEN	1-O-methyl-beta-D-glucopyranoside as carbon sourceMbGu	esculin as carbon sourceESC	D-ribose as carbon sourceRIB	L-arabinose as carbon sourceARA	D-xylose as carbon sourceXYL	palatinose as carbon sourcePLE	L-rhamnose as carbon sourceRHA	L-fucose as carbon sourceFUC	D-melezitose as carbon sourceMLZ	D-arabitol as carbon sourceDARL	L-arabitol as carbon sourceLARL	xylitol as carbon sourceXLT	dulcitol as carbon sourceDUL	D-tagatose as carbon sourceTAG	glycerol as carbon sourceGLY	myo-inositol as carbon sourceINO	D-mannitol as carbon sourceMAN	maltitol as carbon sourceMTL	D-turanose as carbon sourceTUR	D-sorbitol as carbon sourceSOR	adonitol as carbon sourceADO	hydroxyquinoline-beta-glucuronide as carbon sourceHBG	D-lyxose as carbon sourceLYX	i-erythritol as carbon sourceERY	1-O-methyl-alpha-D-glucoside as carbon sourceMDG	3-O-methyl-D-glucose as carbon source3MDG	D-saccharate as carbon sourceSAT	mucate as carbon sourceMUC	L-tartrate as carbon sourceLTAT	D-tartrate as carbon sourceDTAT	meso-tartrate as carbon sourceMTAT	D-malate as carbon sourceDMLT	L-malate as carbon sourceLMLT	cis-aconitate as carbon sourceCATE	trans-aconitate as carbon sourceTATE	tricarballylate as carbon sourceTTE	citrate as carbon sourceCIT	D-glucuronate as carbon sourceGRT	D-galacturonate as carbon sourceGAT	2-ketogluconate as carbon source2KG	5-ketogluconate as carbon source5KG	tryptophan as carbon sourceTRY	N-acetyl-D-glucosamine as carbon sourceNAG	D-gluconate as carbon sourceGNT	phenylacetate as carbon sourcePAC	protocatechuate as carbon sourcePAT	4-hydroxybenzoate as carbon sourcepOBE	quinate as carbon sourceQAT	gentisate as carbon sourceGTE	3-hydroxybenzoate as carbon sourcemOBE	benzoate as carbon sourceBAT	3-phenylpropionate as carbon sourcePPAT	m-coumarate as carbon sourceCMT	trigonelline as carbon sourceTGE	betaine as carbon sourceBET	putrescine as carbon sourcePCE	4-aminobutyrate as carbon sourceABT	histamine as carbon sourceHIN	DL-lactate as carbon sourceLAT	caprate as carbon sourceCAP	caprylate as carbon sourceCYT	L-histidine as carbon sourceHIS	succinate as carbon sourceSUC	fumarate as carbon sourceFUM	glutarate as carbon sourceGRE	DL-glycerate as carbon sourceGYT	5-aminovalerate as carbon sourceAVT	ethanolamine as carbon sourceETN	tryptamine as carbon sourceTTN	D-glucosamine as carbon sourceGLN	itaconate as carbon sourceITA	3-hydroxybutyrate as carbon source3OBU	L-aspartate as carbon sourceAPT	L-glutamate as carbon sourceGTT	L-proline as carbon sourcePRO	D-alanine as carbon sourceDALA	L-alanine as carbon sourceLALA	L-serine as carbon sourceSER	malonate as carbon sourceMNT	propionate as carbon sourcePROP	L-tyrosine as carbon sourceTYR	2-ketoglutarate as carbon source2KT
[Ref.: #38781]	75	not determinedn.d.	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	+	-	-	-	-	-	-	-	-	+	+	-	-	-	-	-	-	-	-

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #38781]	6687	-	+	+	+	-	+	-	-	-	-	+	+	-	-	-	-	-	-	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #38781]	Sample type/isolated from	Human, Leg slough
[Ref.: #38781]	Geographic location (country and/or sea, region)	Bondy
[Ref.: #38781]	Country	France
[Ref.: #38781]	Country ISO 3 Code	FRA
[Ref.: #38781]	Continent	Europe
[Ref.: #38781]	Isolation date	1984

[Ref.: #38781]	Geographic location (country and/or sea, region)	Bondy
[Ref.: #38781]	Country	France
[Ref.: #38781]	Country ISO 3 Code	FRA
[Ref.: #38781]	Continent	Europe
* marker position based on {}

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #38781]

Biosafety level

Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Myroides odoratimimus CIP 101113	GCA_000242135	scaffold	GenBank	883154 tax ID	*
[Ref.: #66792]	Myroides odoratimimus CIP 101113	883154.3	wgs	PATRIC	883154 tax ID	*
[Ref.: #66792]	Myroides odoratimimus CIP 101113	2522572177	draft	JGI IMG/M	883154 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Myroides odoratimimus CIP 101113 PATRIC: 883154.3
[Ref.: #69481]	spore-forming	no	73	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Myroides odoratimimus CIP 101113 CIP 101113 NCBI: GCA_000242135.1
[Ref.: #69480]	motile	no	90.478	no
[Ref.: #69480]	flagellated	no	93.851	no
[Ref.: #69480]	gram-positive	no	98.059	no
[Ref.: #69480]	anaerobic	no	99.387	no
[Ref.: #69480]	aerobic	yes	83.75	no
[Ref.: #69480]	halophile	no	81.065	no
[Ref.: #69480]	spore-forming	no	94.917	no
[Ref.: #69480]	thermophile	no	99.876	yes
[Ref.: #69480]	glucose-util	yes	65.634	no
[Ref.: #69480]	glucose-ferment	no	90.213	no

Availability in culture collections External links

[Ref.: #38781]

Culture collection no.

CIP 101113, LMG 14961, ATCC 700470

[Ref.: #94651]

SI-ID 7908

Literature:

Topic	Title	Authors	Journal	DOI	Year
Genetics	Comparative genomic analysis of Myroides odoratimimus isolates.	Hu S, Cao L, Wu Y, Zhou Y, Jiang T, Wang L, Wang Q, Ming D, Chen S, Wang M	Microbiologyopen	10.1002/mbo3.634	2018	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#38781 Collection of Institut Pasteur ; Curators of the CIP; CIP 101113

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#68382

Automatically annotated from API zym .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#94651

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID7908.1 )

* These data were automatically processed and therefore are not curated

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Myroides odoratimimus CIP 101113

Myroides odoratimimus CIP 101113 CIP 101113

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