Myroides odoratimimus (CIP 103059, LMG 14970)

Name: Myroides odoratimimus (CIP 103059, LMG 14970)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 136162

Type strain

Culture col. no. CIP 103059 LMG 14970

NCBI tax ID(s) 76832

Special Collections CIP

History CIP <- 1989, Lab. Ident. Inst. Pasteur, Paris, France: strain 802-81, Flavobacterium odoratum <- Beaune Hosp., Beaune, France

Links

Myroides odoratimimus CIP 103059 is an obligate aerobe, Gram-negative, rod-shaped bacterium of the family Flavobacteriaceae.

Gram-negative rod-shaped obligate aerobe genome sequence Bacteria

Name and taxonomic classification

SI-ID 7911

LMG 14970,CIP 103059

@ref 20215

Last LPSN update 2026-05-29 08:38:44

Domain Bacteria

Phylum Bacteroidota

Class Flavobacteriia

Order Flavobacteriales

Family Flavobacteriaceae

Genus Myroides

Species Myroides odoratimimus

Full scientific name Myroides odoratimimus Vancanneyt et al. 1996

BacDive ID	Other strains from **Myroides odoratimimus** (64)	Type strain
135149	M. odoratimimus CIP 103075, LMG 14974
135154	M. odoratimimus CIP 103073, LMG 14973, ATCC 700471
135504	M. odoratimimus CIP 100062, LMG 14956
136157	M. odoratimimus CIP 103058, LMG 14969
136160	M. odoratimimus CIP 103057, LMG 14968
137025	M. odoratimimus CIP 109984, Van Reynan
137148	M. odoratimimus CIP 78.62, LMG 14981
137835	M. odoratimimus CIP 101113, LMG 14961, ATCC 700470
139002	M. odoratimimus 15l, CIP 104123
139943	M. odoratimimus DSM 100221
139944	M. odoratimimus DSM 100223
139945	M. odoratimimus DSM 100271
139946	M. odoratimimus DSM 100469
139947	M. odoratimimus DSM 100471
139948	M. odoratimimus DSM 100472
139949	M. odoratimimus DSM 100473
139950	M. odoratimimus DSM 100474
139951	M. odoratimimus DSM 100475
139952	M. odoratimimus DSM 100476
139953	M. odoratimimus DSM 100477
139954	M. odoratimimus DSM 100677
139955	M. odoratimimus DSM 100679
139956	M. odoratimimus DSM 100682
139957	M. odoratimimus DSM 100683
139958	M. odoratimimus DSM 100819
139959	M. odoratimimus DSM 100820
139960	M. odoratimimus DSM 100821
139961	M. odoratimimus DSM 100840
139962	M. odoratimimus DSM 100841
139963	M. odoratimimus DSM 100843
139964	M. odoratimimus DSM 100844
139965	M. odoratimimus DSM 100859
139966	M. odoratimimus DSM 100863
139967	M. odoratimimus DSM 100864
139968	M. odoratimimus DSM 100865
139969	M. odoratimimus DSM 100866
139970	M. odoratimimus DSM 100867
139971	M. odoratimimus DSM 100889
139972	M. odoratimimus DSM 100891
139973	M. odoratimimus DSM 100893
139974	M. odoratimimus DSM 100894
139975	M. odoratimimus DSM 100895
139976	M. odoratimimus DSM 100896
139977	M. odoratimimus DSM 100897
139978	M. odoratimimus DSM 100898
139979	M. odoratimimus DSM 100899
139980	M. odoratimimus 40[81245/7], 40[8124517], 100920, DSM 100920
139981	M. odoratimimus DSM 101069
139982	M. odoratimimus DSM 101503
139983	M. odoratimimus DSM 101504
139984	M. odoratimimus DSM 101506
139985	M. odoratimimus DSM 101507
141266	M. odoratimimus CCUG 469 A, LMG 12835
141620	M. odoratimimus CCUG 3837, LMG 12836
142065	M. odoratimimus CCUG 10230
142500	M. odoratimimus CCUG 12700
142542	M. odoratimimus CCUG 12901
143976	M. odoratimimus CCUG 22181, LMG 12840
144104	M. odoratimimus CCUG 23074
150602	M. odoratimimus CCUG 41717
150895	M. odoratimimus CCUG 42655
153236	M. odoratimimus CCUG 48840
155055	M. odoratimimus CCUG 56315
175225	M. odoratimimus 116873, DSM 116873

Morphology

Cell morphology

@ref	Gram stain	Cell shape	Confidence
35478	negative	rod-shaped
125438			90
125438	negative		98.432

Pigmentation

@ref	Production	Name
35478		flexirubin type pigments

Culture and growth conditions

Culture medium

@ref	Name	Growth	Composition	Medium link
35478	MEDIUM 72- for trypto casein soja agar		Distilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g)
35478	CIP Medium 72			Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)
35478	positive	growth	30
35478	positive	growth	15-41
35478	negative	growth	5
35478	negative	growth	45

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
35478	obligate aerobe
125439	obligate aerobe	95.71

Spore formation

@ref	Spore formation	Confidence
125438		90.305

Halophily

@ref	Salt	Growth	Tested relation	Concentration
35478	NaCl	positive	growth	0-4 %
35478	NaCl		growth	6 %
35478	NaCl		growth	8 %
35478	NaCl		growth	10 %

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
35478	16947 ChEBI	citrate	-	carbon source
35478	4853 ChEBI	esculin	-	hydrolysis
35478	606565 ChEBI	hippurate	+	hydrolysis
35478	15792 ChEBI	malonate	-	assimilation
35478	17632 ChEBI	nitrate	-	builds gas from
35478	17632 ChEBI	nitrate	-	reduction
35478	16301 ChEBI	nitrite	-	builds gas from
35478	16301 ChEBI	nitrite	+	reduction

Antibiotic resistance

@ref	Metabolite	Is sensitive	Is resistant
35478	0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)

Metabolite production

@ref	Chebi-ID	Metabolite	Production
35478	35581 ChEBI	indole

Metabolite tests

@ref	Chebi-ID	Metabolite	Voges-proskauer-test	Methylred-test
35478	15688 ChEBI	acetoin	-
35478	17234 ChEBI	glucose		-

Enzymes

@ref	Value	Activity	Ec
68382	acid phosphatase	+	3.1.3.2	from API zym
35478	alcohol dehydrogenase	-	1.1.1.1
68382	alkaline phosphatase	+	3.1.3.1	from API zym
68382	alpha-chymotrypsin	-	3.4.21.1	from API zym
68382	alpha-fucosidase	-	3.2.1.51	from API zym
68382	alpha-galactosidase	-	3.2.1.22	from API zym
68382	alpha-glucosidase	-	3.2.1.20	from API zym
68382	alpha-mannosidase	-	3.2.1.24	from API zym
35478	amylase	-
35478	beta-galactosidase	-	3.2.1.23
68382	beta-galactosidase	-	3.2.1.23	from API zym
68382	beta-glucosidase	-	3.2.1.21	from API zym
68382	beta-glucuronidase	-	3.2.1.31	from API zym
35478	caseinase	-	3.4.21.50
35478	catalase	+	1.11.1.6
68382	cystine arylamidase	-	3.4.11.3	from API zym
35478	DNase	+
68382	esterase (C 4)	+		from API zym
68382	esterase lipase (C 8)	+		from API zym
35478	gamma-glutamyltransferase	+	2.3.2.2
35478	gelatinase	+
35478	lecithinase	-
68382	leucine arylamidase	+	3.4.11.1	from API zym
35478	lipase	-
68382	lipase (C 14)	-		from API zym
35478	lysine decarboxylase	-	4.1.1.18
68382	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API zym
68382	naphthol-AS-BI-phosphohydrolase	+		from API zym
35478	ornithine decarboxylase	-	4.1.1.17
35478	oxidase	+
35478	phenylalanine ammonia-lyase	-	4.3.1.24
68382	trypsin	-	3.4.21.4	from API zym
35478	tryptophan deaminase	-
35478	tween esterase	-
35478	urease	+	3.5.1.5
68382	valine arylamidase	-		from API zym

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
35478	-	+	+	+	-	+	-	-	-	-	+	+	-	-	-	-	-	-	-	-

API biotype100

@ref	ControlQ	D-glucose as carbon sourceGLU	D-fructose as carbon sourceFRU	D-galactose as carbon sourceGAL	D-trehalose as carbon sourceTRE	D-mannose as carbon sourceMNE	L-sorbose as carbon sourceSBE	D-melibiose as carbon sourceMEL	sucrose as carbon sourceSAC	D-raffinose as carbon sourceRAF	maltotriose as carbon sourceMTE	maltose as carbon sourceMAL	lactose as carbon sourceLAC	lactulose as carbon sourceLTE	1-O-methyl-beta-galactopyranoside as carbon sourceMbGa	1-O-methyl-alpha-galactopyranoside as carbon sourceMaGa	D-cellobiose as carbon sourceCEL	gentiobiose as carbon sourceGEN	1-O-methyl-beta-D-glucopyranoside as carbon sourceMbGu	esculin as carbon sourceESC	D-ribose as carbon sourceRIB	L-arabinose as carbon sourceARA	D-xylose as carbon sourceXYL	palatinose as carbon sourcePLE	L-rhamnose as carbon sourceRHA	L-fucose as carbon sourceFUC	D-melezitose as carbon sourceMLZ	D-arabitol as carbon sourceDARL	L-arabitol as carbon sourceLARL	xylitol as carbon sourceXLT	dulcitol as carbon sourceDUL	D-tagatose as carbon sourceTAG	glycerol as carbon sourceGLY	myo-inositol as carbon sourceINO	D-mannitol as carbon sourceMAN	maltitol as carbon sourceMTL	D-turanose as carbon sourceTUR	D-sorbitol as carbon sourceSOR	adonitol as carbon sourceADO	hydroxyquinoline-beta-glucuronide as carbon sourceHBG	D-lyxose as carbon sourceLYX	i-erythritol as carbon sourceERY	1-O-methyl-alpha-D-glucoside as carbon sourceMDG	3-O-methyl-D-glucose as carbon source3MDG	D-saccharate as carbon sourceSAT	mucate as carbon sourceMUC	L-tartrate as carbon sourceLTAT	D-tartrate as carbon sourceDTAT	meso-tartrate as carbon sourceMTAT	D-malate as carbon sourceDMLT	L-malate as carbon sourceLMLT	cis-aconitate as carbon sourceCATE	trans-aconitate as carbon sourceTATE	tricarballylate as carbon sourceTTE	citrate as carbon sourceCIT	D-glucuronate as carbon sourceGRT	D-galacturonate as carbon sourceGAT	2-ketogluconate as carbon source2KG	5-ketogluconate as carbon source5KG	tryptophan as carbon sourceTRY	N-acetyl-D-glucosamine as carbon sourceNAG	D-gluconate as carbon sourceGNT	phenylacetate as carbon sourcePAC	protocatechuate as carbon sourcePAT	4-hydroxybenzoate as carbon sourcepOBE	quinate as carbon sourceQAT	gentisate as carbon sourceGTE	3-hydroxybenzoate as carbon sourcemOBE	benzoate as carbon sourceBAT	3-phenylpropionate as carbon sourcePPAT	m-coumarate as carbon sourceCMT	trigonelline as carbon sourceTGE	betaine as carbon sourceBET	putrescine as carbon sourcePCE	4-aminobutyrate as carbon sourceABT	histamine as carbon sourceHIN	DL-lactate as carbon sourceLAT	caprate as carbon sourceCAP	caprylate as carbon sourceCYT	L-histidine as carbon sourceHIS	succinate as carbon sourceSUC	fumarate as carbon sourceFUM	glutarate as carbon sourceGRE	DL-glycerate as carbon sourceGYT	5-aminovalerate as carbon sourceAVT	ethanolamine as carbon sourceETN	tryptamine as carbon sourceTTN	D-glucosamine as carbon sourceGLN	itaconate as carbon sourceITA	3-hydroxybutyrate as carbon source3OBU	L-aspartate as carbon sourceAPT	L-glutamate as carbon sourceGTT	L-proline as carbon sourcePRO	D-alanine as carbon sourceDALA	L-alanine as carbon sourceLALA	L-serine as carbon sourceSER	malonate as carbon sourceMNT	propionate as carbon sourcePROP	L-tyrosine as carbon sourceTYR	2-ketoglutarate as carbon source2KT
35478	not determinedn.d.	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	-	-	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	-	-	-	-	-	-	-	-	-	-	-	-

Isolation, sampling and environmental information

Isolation

@ref	Sample type	Host species	Geographic location	Country	Country ISO 3 Code	Continent	Isolation date
35478			Beaune	France	FRA	Europe
35478	Human, Leg slough	Homo sapiens	Beaune	France	FRA	Europe	1981

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
35478	1	Risk group (French classification)

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	Myro_odor_CIP103059_G12587_V1 assembly for Myroides odoratus CIP 103059	scaffold	GCA_000297875	883155.3	2522572176	883155	60.03

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Myro_odor_CIP103059_G12587_V1 assembly for Myroides odoratus CIP 103059
BV-BRC: 883155.3

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	95.71	no
125439	gram_stain	BacteriaNetⓘ	positive	44.14	no
125439	motility	BacteriaNetⓘ	yes	40.54	no
125439	spore_formation	BacteriaNetⓘ	no	73.35	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Myroides odoratus CIP 103059 CIP 103059
NCBI: GCA_000297875.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	98.43	no
125438	anaerobic	anaerobicⓘ	no	95.78	yes
125438	aerobic	aerobicⓘ	yes	84.55	yes
125438	spore-forming	spore-formingⓘ	no	90.31	no
125438	thermophilic	thermophileⓘ	no	97.08	yes
125438	flagellated	motile2+ⓘ	no	90.00	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Pathogenicity	Antibiotic resistance mechanisms of Myroides sp.	Hu SH, Yuan SX, Qu H, Jiang T, Zhou YJ, Wang MX, Ming DS.	J Zhejiang Univ Sci B	10.1631/jzus.b1500068	2016
	Challenges with using names to link digital biodiversity information.	Patterson D, Mozzherin D, Shorthouse DP, Thessen A.	Biodivers Data J	10.3897/bdj.4.e8080	2016

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#35478	Collection of Institut Pasteur ; Curators of the CIP; CIP 103059
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#68382	Automatically annotated from API zym .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Myroides odoratimimus (CIP 103059, LMG 14970)

Name and taxonomic classification

Morphology

Cell morphology

Pigmentation

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Metabolite utilization

Antibiotic resistance

Metabolite production

Metabolite tests

Enzymes

API zym

API biotype100

Isolation, sampling and environmental information

Isolation

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_000297875

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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