Corynebacterium renale (CCUG 6511, ATCC 13401, NCTC 11142)

Name: Corynebacterium renale (CCUG 6511, ATCC 13401, NCTC 11142)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 141762

Type strain

Culture col. no. CCUG 6511 ATCC 13401 NCTC 11142

NCBI tax ID(s) 1724

Special Collections CCUG

Links

Corynebacterium renale CCUG 6511 is a prokaryote that was isolated from Bovine urine.

genome sequence

Name and taxonomic classification

SI-ID 35803

ATCC 13401,NCTC 11142,CCUG 6511

@ref 20215

Last LPSN update 2025-12-16 10:03:56

Domain Bacillati

Phylum Actinomycetota

Class Actinomycetes

Order Mycobacteriales

Family Corynebacteriaceae

Genus Corynebacterium

Species Corynebacterium renale

Full scientific name Corynebacterium renale (Migula 1900) Ernst 1906 (Approved Lists 1980)

Synonyms (1)

"Bacterium renale"

BacDive ID	Other strains from **Corynebacterium renale** (13)	Type strain
3116	C. renale Charita a, Charita-a, DSM 20688, ATCC 19412, ... (type strain)
3114	C. renale Morse 9, CCUG 6510, CECT 4050, DSM 7182, ...
3115	C. renale 5, DSM 20298, ATCC 10848, JCM 1322, IAM 12430, ...
3117	C. renale 12793, DSM 45375, ATCC BAA-1785
136017	C. renale 1602, CIP 52.98
137447	C. renale 9, CIP 69.37, CCM 5740
138399	C. renale 4, CIP 52.99
138619	C. renale 122/10, CIP 52.96
138942	C. renale 42, CIP 69.39
141533	C. renale CCUG 2707, NCTC 7449
145001	C. renale CCUG 27368, CG 802/89
145002	C. renale CCUG 27369, CG 185/90
148344	C. renale CCUG 35259

Morphology

Cell morphology

@ref	Motility	Confidence
125438		94.5
125439		95.3
125439		95.6

Culture and growth conditions

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125439	microaerophile	98.1

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
68379	17634 ChEBI	D-glucose	+	fermentation	from API Coryne
68379	16899 ChEBI	D-mannitol	-	fermentation	from API Coryne
68379	16988 ChEBI	D-ribose	+	fermentation	from API Coryne
68379	65327 ChEBI	D-xylose	-	fermentation	from API Coryne
68379	4853 ChEBI	esculin	-	hydrolysis	from API Coryne
68379	5291 ChEBI	gelatin	-	hydrolysis	from API Coryne
68379	28087 ChEBI	glycogen	-	fermentation	from API Coryne
68379	17716 ChEBI	lactose	-	fermentation	from API Coryne
68379	17306 ChEBI	maltose	-	fermentation	from API Coryne
68379	17632 ChEBI	nitrate	-	reduction	from API Coryne
68379	17992 ChEBI	sucrose	-	fermentation	from API Coryne
68379	16199 ChEBI	urea	+	hydrolysis	from API Coryne

Enzymes

@ref	Value	Activity	Ec
68382	acid phosphatase	-	3.1.3.2	from API zym
68382	alkaline phosphatase	-	3.1.3.1	from API zym
68379	alkaline phosphatase	-	3.1.3.1	from API Coryne
68382	alpha-chymotrypsin	-	3.4.21.1	from API zym
68382	alpha-fucosidase	-	3.2.1.51	from API zym
68382	alpha-galactosidase	-	3.2.1.22	from API zym
68382	alpha-glucosidase	-	3.2.1.20	from API zym
68379	alpha-glucosidase	-	3.2.1.20	from API Coryne
68382	alpha-mannosidase	-	3.2.1.24	from API zym
68382	beta-galactosidase	-	3.2.1.23	from API zym
68379	beta-galactosidase	-	3.2.1.23	from API Coryne
68382	beta-glucosidase	-	3.2.1.21	from API zym
68379	beta-glucosidase	-	3.2.1.21	from API Coryne
68382	beta-glucuronidase	+	3.2.1.31	from API zym
68379	beta-glucuronidase	+	3.2.1.31	from API Coryne
68379	catalase	+	1.11.1.6	from API Coryne
68382	cystine arylamidase	-	3.4.11.3	from API zym
68382	esterase (C 4)	+		from API zym
68382	esterase lipase (C 8)	+		from API zym
68379	gelatinase	-		from API Coryne
68382	leucine arylamidase	+	3.4.11.1	from API zym
68382	lipase (C 14)	-		from API zym
68382	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API zym
68379	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API Coryne
68382	naphthol-AS-BI-phosphohydrolase	-		from API zym
68379	pyrazinamidase	+	3.5.1.B15	from API Coryne
68379	pyrrolidonyl arylamidase	-	3.4.19.3	from API Coryne
68382	trypsin	-	3.4.21.4	from API zym
68379	urease	+	3.5.1.5	from API Coryne
68382	valine arylamidase	-		from API zym

Pathway annotation

Computationally determined by

@ref	pathway	enzyme coverage	annotated reactions
66794	ppGpp biosynthesis	100	4 of 4
66794	formaldehyde oxidation	100	3 of 3
66794	acetoin degradation	100	3 of 3
66794	acetate fermentation	100	4 of 4
66794	CDP-diacylglycerol biosynthesis	100	2 of 2
66794	UDP-GlcNAc biosynthesis	100	3 of 3
66794	suberin monomers biosynthesis	100	2 of 2
66794	anapleurotic synthesis of oxalacetate	100	1 of 1
66794	hydrogen production	100	5 of 5
66794	folate polyglutamylation	100	1 of 1
66794	aerobactin biosynthesis	100	1 of 1
66794	methylglyoxal degradation	100	5 of 5
66794	valine metabolism	88.89	8 of 9
66794	aspartate and asparagine metabolism	88.89	8 of 9
66794	chorismate metabolism	88.89	8 of 9
66794	glycolate and glyoxylate degradation	83.33	5 of 6
66794	pentose phosphate pathway	81.82	9 of 11
66794	lipoate biosynthesis	80	4 of 5
66794	flavin biosynthesis	80	12 of 15
66794	vitamin K metabolism	80	4 of 5
66794	glycine betaine biosynthesis	80	4 of 5
66794	tetrahydrofolate metabolism	78.57	11 of 14
66794	heme metabolism	78.57	11 of 14
66794	photosynthesis	78.57	11 of 14
66794	palmitate biosynthesis	77.27	17 of 22
66794	vitamin B1 metabolism	76.92	10 of 13
66794	sulfopterin metabolism	75	3 of 4
66794	6-hydroxymethyl-dihydropterin diphosphate biosynthesis	75	6 of 8
66794	glycogen biosynthesis	75	3 of 4
66794	coenzyme A metabolism	75	3 of 4
66794	peptidoglycan biosynthesis	73.33	11 of 15
66794	NAD metabolism	72.22	13 of 18
66794	cardiolipin biosynthesis	71.43	5 of 7
66794	purine metabolism	71.28	67 of 94
66794	glycolysis	70.59	12 of 17
66794	threonine metabolism	70	7 of 10
66794	molybdenum cofactor biosynthesis	66.67	6 of 9
66794	selenocysteine biosynthesis	66.67	4 of 6
66794	isoprenoid biosynthesis	65.38	17 of 26
66794	metabolism of disaccharids	63.64	7 of 11
66794	ketogluconate metabolism	62.5	5 of 8
66794	C4 and CAM-carbon fixation	62.5	5 of 8
66794	gluconeogenesis	62.5	5 of 8
66794	isoleucine metabolism	62.5	5 of 8
66794	dTDPLrhamnose biosynthesis	62.5	5 of 8
66794	phenylalanine metabolism	61.54	8 of 13
66794	urea cycle	61.54	8 of 13
66794	methionine metabolism	57.69	15 of 26
66794	glutamate and glutamine metabolism	57.14	16 of 28
66794	citric acid cycle	57.14	8 of 14
66794	ubiquinone biosynthesis	57.14	4 of 7
66794	CO2 fixation in Crenarchaeota	55.56	5 of 9
66794	serine metabolism	55.56	5 of 9
66794	cysteine metabolism	55.56	10 of 18
66794	d-mannose degradation	55.56	5 of 9
66794	lipid metabolism	54.84	17 of 31
66794	alanine metabolism	51.72	15 of 29
66794	ethanol fermentation	50	1 of 2
66794	mannosylglycerate biosynthesis	50	1 of 2
66794	lactate fermentation	50	2 of 4
66794	non-pathway related	50	19 of 38
66794	cis-vaccenate biosynthesis	50	1 of 2
66794	phenylmercury acetate degradation	50	1 of 2
66794	butanoate fermentation	50	2 of 4
66794	glutathione metabolism	50	7 of 14
66794	pyrimidine metabolism	48.89	22 of 45
66794	histidine metabolism	48.28	14 of 29
66794	lysine metabolism	47.62	20 of 42
66794	tryptophan metabolism	47.37	18 of 38
66794	leucine metabolism	46.15	6 of 13
66794	arginine metabolism	45.83	11 of 24
66794	reductive acetyl coenzyme A pathway	42.86	3 of 7
66794	propanol degradation	42.86	3 of 7
66794	oxidative phosphorylation	42.86	39 of 91
66794	degradation of aromatic, nitrogen containing compounds	41.67	5 of 12
66794	glycine metabolism	40	4 of 10
66794	glycogen metabolism	40	2 of 5
66794	propionate fermentation	40	4 of 10
66794	coenzyme M biosynthesis	40	4 of 10
66794	metabolism of amino sugars and derivatives	40	2 of 5
66794	degradation of hexoses	38.89	7 of 18
66794	sulfate reduction	38.46	5 of 13
66794	vitamin B6 metabolism	36.36	4 of 11
66794	proline metabolism	36.36	4 of 11
66794	degradation of sugar acids	36	9 of 25
66794	pantothenate biosynthesis	33.33	2 of 6
66794	enterobactin biosynthesis	33.33	1 of 3
66794	octane oxidation	33.33	1 of 3
66794	IAA biosynthesis	33.33	1 of 3
66794	lipid A biosynthesis	33.33	3 of 9
66794	L-lactaldehyde degradation	33.33	1 of 3
66794	acetyl CoA biosynthesis	33.33	1 of 3
66794	cyanate degradation	33.33	1 of 3
66794	degradation of sugar alcohols	31.25	5 of 16
66794	tyrosine metabolism	28.57	4 of 14
66794	phenol degradation	25	5 of 20
66794	cyclohexanol degradation	25	1 of 4
66794	toluene degradation	25	1 of 4
66794	methanogenesis from CO2	25	3 of 12
66794	biotin biosynthesis	25	1 of 4
66794	degradation of pentoses	25	7 of 28
66794	CMP-KDO biosynthesis	25	1 of 4
66794	ascorbate metabolism	22.73	5 of 22
66794	allantoin degradation	22.22	2 of 9
66794	nitrate assimilation	22.22	2 of 9

Fatty acid profile

Metadata FA analysis

@ref

44903

Fatty acid	Percentage	ECL
unknown 14.966	21.6	14.966
C16:0	19.8	16
C18:1 ω9c	14.8	17.769
C18:2 ω6,9c/C18:0 ANTE	10.6	17.724
C17:1 ω9c	9.2	16.773
C17:0 anteiso	7.5	16.722
C16:0 N alcohol	3.9	15.549
C18:0	3	18
C17:0	2.4	17
Unidentified	2.3	17.373
unknown 14.776	2.1	14.776
Unidentified	1.6	12.943
Unidentified	1.4	17.329

API coryne

@ref	Reduction of nitrateNIT	PYZ	PYRA	PAL	beta GUR	beta GAL	alpha GLU	beta NAG	ESC	URE	GEL	Control fermentationControl	GLU	RIB	XYL	MAN	MAL	LAC	SAC	GLYG	CAT
44903	-	+	-	-	+	-	-	-	-	+	-	-	not determinedn.d.	+	-	-	-	-	-	-	+
44903	-	+	-	-	+	-	-	-	-	+	-	-	+	+	-	-	-	-	-	-	+

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
44903	-	-	+	+	-	+	-	-	-	-	-	-	-	-	+	-	-	-	-	-

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host	#Mammals	#Bovinae (Cow, Cattle)
#Host Body Product	#Fluids	#Urine

Isolation

44903

Sample typeBovine urine

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	45076_B02 assembly for Corynebacterium renale NCTC11142	contig	GCA_900447255	1724.13	2971358054	1724	78.27

Genome browser: GCA_900447255

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Corynebacterium renale NCTC11142
NCBI: GCA_900447255

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	86.90	no
125439	motility	BacteriaNetⓘ	no	95.60	no
125439	gram_stain	BacteriaNetⓘ	positive	95.30	no
125439	oxygen_tolerance	BacteriaNetⓘ	microaerophile	98.10	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Corynebacterium renale strain NCTC11142
PATRIC: 1724.13

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	88.73	no
125438	anaerobic	anaerobicⓘ	no	88.85	no
125438	spore-forming	spore-formingⓘ	no	75.86	no
125438	aerobic	aerobicⓘ	no	66.13	no
125438	thermophilic	thermophileⓘ	no	93.07	no
125438	flagellated	motile2+ⓘ	no	94.50	no

Literature

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#44903	Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 6511
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#66794	Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg: BRENDA, the ELIXIR core data resource in 2021: new developments and updates. Nucleic Acids Res. 49: D498 - D508 2020 ( DOI 10.1093/nar/gkaa1025 , PubMed 33211880 )
#68379	Automatically annotated from API Coryne .
#68382	Automatically annotated from API zym .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Corynebacterium renale (CCUG 6511, ATCC 13401, NCTC 11142)

Name and taxonomic classification