Strain identifier

BacDive ID: 141762

Type strain: No

Species: Corynebacterium renale

NCBI tax ID(s): 1724 (species)

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General

@ref: 44903

BacDive-ID: 141762

keywords: genome sequence, Bacteria, Gram-positive

description: Corynebacterium renale CCUG 6511 is a Gram-positive bacterium that was isolated from Bovine urine.

NCBI tax id

  • NCBI tax id: 1724
  • Matching level: species

doi: 10.13145/bacdive141762.20240916.9.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Mycobacteriales
  • family: Corynebacteriaceae
  • genus: Corynebacterium
  • species: Corynebacterium renale
  • full scientific name: Corynebacterium renale (Migula 1900) Ernst 1906 (Approved Lists 1980)

  • synonyms

    • @ref: 20215
    • synonym: Bacterium renale

@ref: 44903

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Mycobacteriales

family: Corynebacteriaceae

genus: Corynebacterium

species: Corynebacterium renale

type strain: no

Morphology

cell morphology

  • @ref: 69480
  • motility: no
  • confidence: 94.5

Physiology and metabolism

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6837917632nitrate-reduction
683794853esculin-hydrolysis
6837916199urea+hydrolysis
683795291gelatin-hydrolysis
6837917634D-glucose+fermentation
6837916988D-ribose+fermentation
6837965327D-xylose-fermentation
6837916899D-mannitol-fermentation
6837917306maltose-fermentation
6837917716lactose-fermentation
6837917992sucrose-fermentation
6837928087glycogen-fermentation

enzymes

@refvalueactivityec
68379catalase+1.11.1.6
68379gelatinase-
68379urease+3.5.1.5
68379beta-glucosidase-3.2.1.21
68379N-acetyl-beta-glucosaminidase-3.2.1.52
68379alpha-glucosidase-3.2.1.20
68379beta-galactosidase-3.2.1.23
68379beta-glucuronidase+3.2.1.31
68379alkaline phosphatase-3.1.3.1
68379pyrrolidonyl arylamidase-3.4.19.3
68379pyrazinamidase+3.5.1.B15
68382alkaline phosphatase-3.1.3.1
68382esterase (C 4)+
68382esterase lipase (C 8)+
68382lipase (C 14)-
68382leucine arylamidase+3.4.11.1
68382valine arylamidase-
68382cystine arylamidase-3.4.11.3
68382trypsin-3.4.21.4
68382alpha-chymotrypsin-3.4.21.1
68382acid phosphatase-3.1.3.2
68382naphthol-AS-BI-phosphohydrolase-
68382alpha-galactosidase-3.2.1.22
68382beta-galactosidase-3.2.1.23
68382beta-glucuronidase+3.2.1.31
68382alpha-glucosidase-3.2.1.20
68382beta-glucosidase-3.2.1.21
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382alpha-mannosidase-3.2.1.24
68382alpha-fucosidase-3.2.1.51

fatty acid profile

  • fatty acids

    @reffatty acidpercentageECL
    44903C16:019.816
    44903C17:02.417
    44903C18:0318
    44903C16:0 N alcohol3.915.549
    44903C17:0 anteiso7.516.722
    44903C17:1 ω9c9.216.773
    44903C18:1 ω9c14.817.769
    44903C18:2 ω6,9c/C18:0 ANTE10.617.724
    44903Unidentified1.612.943
    44903Unidentified1.417.329
    44903Unidentified2.317.373
    44903unknown 14.7762.114.776
    44903unknown 14.96621.614.966
  • type of FA analysis: whole cell analysis
  • method/protocol: CCUG

API coryne

@refNITPYZPYRAPALbeta GURbeta GALalpha GLUbeta NAGESCUREGELControlRIBXYLMANMALLACSACGLYGCATGLU
44903-+--+----+--+------+
44903-+--+----+--+------++

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
44903--++-+--------+-----

Isolation, sampling and environmental information

isolation

  • @ref: 44903
  • sample type: Bovine urine

isolation source categories

Cat1Cat2Cat3
#Host#Mammals#Bovinae (Cow, Cattle)
#Host Body Product#Fluids#Urine

Sequence information

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Corynebacterium renale NCTC11142GCA_900447255contigncbi1724
66792Corynebacterium renale strain NCTC111421724.13wgspatric1724

Genome-based predictions

predictions

@reftraitmodeldescriptionpredictionconfidencetraining_data
69481spore-formingspore-formingAbility to form endo- or exosporesno89no
69480gram-positivegram-positivePositive reaction to Gram-stainingyes88.729no
69480anaerobicanaerobicAbility to grow under anoxygenic conditions (including facultative anaerobes)no88.853no
69480spore-formingspore-formingAbility to form endo- or exosporesno75.859no
69480aerobicaerobicAbility to grow under oxygenic conditions (including facultative aerobes)no66.129no
69480thermophilicthermophileAbility to grow at temperatures above or equal to 45°Cno93.074no
69480flagellatedmotile2+Ability to perform flagellated movementno94.5no

External links

@ref: 44903

culture collection no.: CCUG 6511, ATCC 13401, NCTC 11142

straininfo link

  • @ref: 97389
  • straininfo: 35803

Reference

@idauthorstitledoi/urlcataloguejournalpubmed
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
44903Curators of the CCUGhttps://www.ccug.se/strain?id=6511Culture Collection University of Gothenburg (CCUG) (CCUG 6511)
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
66794Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar SchomburgBRENDA, the ELIXIR core data resource in 2021: new developments and updates10.1093/nar/gkaa1025Nucleic Acids Res. 49: D498-D508 202033211880
68379Automatically annotated from API Coryne
68382Automatically annotated from API zym
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. MünchPredictions based on the model GenomeNet Sporulation v. 110.21203/rs.3.rs-2527258/v1
97389Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID35803.1