Corynebacterium renale (CIP 69.39, 42)

Name: Corynebacterium renale (CIP 69.39, 42)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 138942

Type strain

Strain Designation 42

Culture col. no. CIP 69.39 42

NCBI tax ID(s) 1724

Special Collections CIP

History CIP <- 1969, A. Vallée, Inst. Pasteur <- R. Yanagawa: strain 42

Links

Corynebacterium renale 42 is a facultative anaerobe, Gram-positive, rod-shaped bacterium that was isolated from Pyelonephritis.

Gram-positive rod-shaped facultative anaerobe Bacteria

Name and taxonomic classification

SI-ID 68069

CIP 69.39

@ref 20215

Last LPSN update 2026-05-29 08:39:23

Domain Bacteria

Phylum Actinomycetota

Class Actinomycetes

Order Mycobacteriales

Family Corynebacteriaceae

Genus Corynebacterium

Species Corynebacterium renale

Full scientific name Corynebacterium renale (Migula 1900) Ernst 1906 (Approved Lists 1980)

Synonyms (1)

"Bacterium renale"

BacDive ID	Other strains from **Corynebacterium renale** (13)	Type strain
3116	C. renale Charita a, Charita-a, DSM 20688, ATCC 19412, ... (type strain)
3114	C. renale Morse 9, CCUG 6510, CECT 4050, DSM 7182, ...
3115	C. renale 5, DSM 20298, ATCC 10848, JCM 1322, IAM 12430, ...
3117	C. renale 12793, DSM 45375, ATCC BAA-1785
136017	C. renale 1602, CIP 52.98
137447	C. renale 9, CIP 69.37, CCM 5740
138399	C. renale 4, CIP 52.99
138619	C. renale 122/10, CIP 52.96
141533	C. renale CCUG 2707, NCTC 7449
141762	C. renale CCUG 6511, ATCC 13401, NCTC 11142
145001	C. renale CCUG 27368, CG 802/89
145002	C. renale CCUG 27369, CG 185/90
148344	C. renale CCUG 35259

Morphology

Cell morphology

@ref	Gram stain	Cell shape	Motility
40942	positive	rod-shaped

Culture and growth conditions

Culture medium

@ref	Name	Composition	Medium link
40942	MEDIUM 3 - Columbia agar	Columbia agar (39.000 g);distilled water (1000.000 ml)
40942	CIP Medium 72		Medium recipe at CIP
40942	CIP Medium 3		Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)
40942	positive	growth	37

Physiology and metabolism

Oxygen tolerance

40942

Oxygen tolerancefacultative anaerobe

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
40942	17632 ChEBI	nitrate	-	reduction
40942	16301 ChEBI	nitrite	-	reduction

Metabolite production

@ref	Chebi-ID	Metabolite	Production
40942	35581 ChEBI	indole

Enzymes

@ref	Value	Activity	Ec
68382	acid phosphatase	-	3.1.3.2	from API zym
68382	alkaline phosphatase	-	3.1.3.1	from API zym
68382	alpha-chymotrypsin	-	3.4.21.1	from API zym
68382	alpha-fucosidase	-	3.2.1.51	from API zym
68382	alpha-galactosidase	-	3.2.1.22	from API zym
68382	alpha-glucosidase	-	3.2.1.20	from API zym
68382	alpha-mannosidase	-	3.2.1.24	from API zym
68382	beta-galactosidase	-	3.2.1.23	from API zym
68382	beta-glucosidase	-	3.2.1.21	from API zym
68382	beta-glucuronidase	+	3.2.1.31	from API zym
40942	catalase	+	1.11.1.6
68382	cystine arylamidase	-	3.4.11.3	from API zym
68382	esterase (C 4)	-		from API zym
68382	esterase lipase (C 8)	+		from API zym
68382	leucine arylamidase	+	3.4.11.1	from API zym
68382	lipase (C 14)	-		from API zym
68382	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API zym
68382	naphthol-AS-BI-phosphohydrolase	+		from API zym
40942	oxidase	-
68382	trypsin	+	3.4.21.4	from API zym
40942	urease	+	3.5.1.5
68382	valine arylamidase	-		from API zym

Pathway annotation

Computationally determined by

@ref	pathway	enzyme coverage	annotated reactions
66794	ppGpp biosynthesis	100	4 of 4
66794	formaldehyde oxidation	100	3 of 3
66794	acetoin degradation	100	3 of 3
66794	acetate fermentation	100	4 of 4
66794	CDP-diacylglycerol biosynthesis	100	2 of 2
66794	UDP-GlcNAc biosynthesis	100	3 of 3
66794	suberin monomers biosynthesis	100	2 of 2
66794	anapleurotic synthesis of oxalacetate	100	1 of 1
66794	hydrogen production	100	5 of 5
66794	folate polyglutamylation	100	1 of 1
66794	aerobactin biosynthesis	100	1 of 1
66794	methylglyoxal degradation	100	5 of 5
66794	valine metabolism	88.89	8 of 9
66794	aspartate and asparagine metabolism	88.89	8 of 9
66794	chorismate metabolism	88.89	8 of 9
66794	glycolate and glyoxylate degradation	83.33	5 of 6
66794	pentose phosphate pathway	81.82	9 of 11
66794	lipoate biosynthesis	80	4 of 5
66794	flavin biosynthesis	80	12 of 15
66794	vitamin K metabolism	80	4 of 5
66794	glycine betaine biosynthesis	80	4 of 5
66794	tetrahydrofolate metabolism	78.57	11 of 14
66794	heme metabolism	78.57	11 of 14
66794	photosynthesis	78.57	11 of 14
66794	palmitate biosynthesis	77.27	17 of 22
66794	vitamin B1 metabolism	76.92	10 of 13
66794	sulfopterin metabolism	75	3 of 4
66794	6-hydroxymethyl-dihydropterin diphosphate biosynthesis	75	6 of 8
66794	glycogen biosynthesis	75	3 of 4
66794	coenzyme A metabolism	75	3 of 4
66794	peptidoglycan biosynthesis	73.33	11 of 15
66794	NAD metabolism	72.22	13 of 18
66794	cardiolipin biosynthesis	71.43	5 of 7
66794	purine metabolism	71.28	67 of 94
66794	glycolysis	70.59	12 of 17
66794	threonine metabolism	70	7 of 10
66794	molybdenum cofactor biosynthesis	66.67	6 of 9
66794	selenocysteine biosynthesis	66.67	4 of 6
66794	isoprenoid biosynthesis	65.38	17 of 26
66794	metabolism of disaccharids	63.64	7 of 11
66794	ketogluconate metabolism	62.5	5 of 8
66794	C4 and CAM-carbon fixation	62.5	5 of 8
66794	gluconeogenesis	62.5	5 of 8
66794	isoleucine metabolism	62.5	5 of 8
66794	dTDPLrhamnose biosynthesis	62.5	5 of 8
66794	phenylalanine metabolism	61.54	8 of 13
66794	urea cycle	61.54	8 of 13
66794	methionine metabolism	57.69	15 of 26
66794	glutamate and glutamine metabolism	57.14	16 of 28
66794	citric acid cycle	57.14	8 of 14
66794	ubiquinone biosynthesis	57.14	4 of 7
66794	CO2 fixation in Crenarchaeota	55.56	5 of 9
66794	serine metabolism	55.56	5 of 9
66794	cysteine metabolism	55.56	10 of 18
66794	d-mannose degradation	55.56	5 of 9
66794	lipid metabolism	54.84	17 of 31
66794	alanine metabolism	51.72	15 of 29
66794	ethanol fermentation	50	1 of 2
66794	mannosylglycerate biosynthesis	50	1 of 2
66794	lactate fermentation	50	2 of 4
66794	non-pathway related	50	19 of 38
66794	cis-vaccenate biosynthesis	50	1 of 2
66794	phenylmercury acetate degradation	50	1 of 2
66794	butanoate fermentation	50	2 of 4
66794	glutathione metabolism	50	7 of 14
66794	pyrimidine metabolism	48.89	22 of 45
66794	histidine metabolism	48.28	14 of 29
66794	lysine metabolism	47.62	20 of 42
66794	tryptophan metabolism	47.37	18 of 38
66794	leucine metabolism	46.15	6 of 13
66794	arginine metabolism	45.83	11 of 24
66794	reductive acetyl coenzyme A pathway	42.86	3 of 7
66794	propanol degradation	42.86	3 of 7
66794	oxidative phosphorylation	42.86	39 of 91
66794	degradation of aromatic, nitrogen containing compounds	41.67	5 of 12
66794	glycine metabolism	40	4 of 10
66794	glycogen metabolism	40	2 of 5
66794	propionate fermentation	40	4 of 10
66794	coenzyme M biosynthesis	40	4 of 10
66794	metabolism of amino sugars and derivatives	40	2 of 5
66794	degradation of hexoses	38.89	7 of 18
66794	sulfate reduction	38.46	5 of 13
66794	vitamin B6 metabolism	36.36	4 of 11
66794	proline metabolism	36.36	4 of 11
66794	degradation of sugar acids	36	9 of 25
66794	pantothenate biosynthesis	33.33	2 of 6
66794	enterobactin biosynthesis	33.33	1 of 3
66794	octane oxidation	33.33	1 of 3
66794	IAA biosynthesis	33.33	1 of 3
66794	lipid A biosynthesis	33.33	3 of 9
66794	L-lactaldehyde degradation	33.33	1 of 3
66794	acetyl CoA biosynthesis	33.33	1 of 3
66794	cyanate degradation	33.33	1 of 3
66794	degradation of sugar alcohols	31.25	5 of 16
66794	tyrosine metabolism	28.57	4 of 14
66794	phenol degradation	25	5 of 20
66794	cyclohexanol degradation	25	1 of 4
66794	toluene degradation	25	1 of 4
66794	methanogenesis from CO2	25	3 of 12
66794	biotin biosynthesis	25	1 of 4
66794	degradation of pentoses	25	7 of 28
66794	CMP-KDO biosynthesis	25	1 of 4
66794	ascorbate metabolism	22.73	5 of 22
66794	allantoin degradation	22.22	2 of 9
66794	nitrate assimilation	22.22	2 of 9

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
40942	-	-	-	+	-	+	-	-	+	-	-	+	-	-	+	-	-	-	-	-

Isolation, sampling and environmental information

Isolation

40942

Sample typePyelonephritis

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
40942	2	Risk group (French classification)

Sequence information

Genome-based predictions

Literature

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#40942	Collection of Institut Pasteur ; Curators of the CIP; CIP 69.39
#66794	Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg: BRENDA, the ELIXIR core data resource in 2021: new developments and updates. Nucleic Acids Res. 49: D498 - D508 2020 ( DOI 10.1093/nar/gkaa1025 , PubMed 33211880 )
#68382	Automatically annotated from API zym .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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