Name: Adhaeribacter terrae HY02
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 140958

Type strain:

Species: Adhaeribacter terrae

Strain Designation: HY02

Culture col. no.: KCTC 52512, JCM 31652

Strain history: <- Hee-Young Jung, Kyungpook National Univ., Korea

NCBI tax ID(s): 1892554 (species)

Section

Adhaeribacter terrae HY02 is an aerobe, Gram-negative, rod-shaped bacterium that was isolated from soil sample collected at Namyangju-si, Gyeonggi-do, Republic of Korea.

Gram-negative
rod-shaped
aerobe
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	25-08-2022 (DD-MM-YYYY)
	Domain	Bacteria
	Phylum	Bacteroidota
	Class	Cytophagia
	Order	Cytophagales
	Family	Hymenobacteraceae
	Genus	Adhaeribacter
	Species	Adhaeribacter terrae
	Full Scientific Name (PNU)	Adhaeribacter terrae Elderiny et al. 2017

Information on morphological and physiological properties Morphology

[Ref.: #43858]	Gram stain	negative
[Ref.: #43858]	Cell length	1.5-2.3 µm
[Ref.: #43858]	Cell width	0.7-0.9 µm
[Ref.: #43858]	Cell shape	rod-shaped

[Ref.: #67771]	Gram stain	negative

[Ref.: #67771]	Cell shape	rod-shaped

[Ref.: #43858]	Colony color	red
[Ref.: #43858]	Incubation period	3 days
[Ref.: #43858]	Cultivation medium used	R2A agar

Information on culture and growth conditions Culture and growth conditions

[Ref.: #43858]

Culture medium

Reasoner's 2A agar (R2A)

[Ref.: #43858]

Culture medium growth

[Ref.: #43858]

Culture medium

LB (Luria-Bertani) MEDIUM

[Ref.: #4]

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Culture medium

Nutrient agar (NA)

[Ref.: #4]

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Culture medium

Tryptic soy agar

[Ref.: #4]

		Temperature
[Ref.: #43858]	growth	15-30 °C
[Ref.: #43858]	optimum	25 °C
[Ref.: #67770]	growth	25 °C
[Ref.: #67771]	growth	25 °C

[Ref.: #43858]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic
[Ref.: #67771]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #43858]			optimum	7
[Ref.: #43858]			growth	7.0-8.0

Information on physiology and metabolism Physiology and metabolism

[Ref.: #67771]

Oxygen tolerance

aerobe

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #43858]		NaCl		growth	0-1	%(w/v)

[Ref.: #43858]	Observation	quinone MK-7
[Ref.: #67771]	Observation	quinones: MK-7

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #43858]	2-dehydro-D-gluconate ChEBI	-	builds acid from
[Ref.: #43858]	2-dehydro-D-gluconate ChEBI	-	carbon source
[Ref.: #43858]	3-hydroxybenzoate ChEBI	-	carbon source
[Ref.: #43858]	3-hydroxybutyrate ChEBI	-	carbon source
[Ref.: #43858]	4-hydroxybenzoate ChEBI	-	carbon source
[Ref.: #43858]	5-dehydro-D-gluconate ChEBI	-	builds acid from
[Ref.: #43858]	5-dehydro-D-gluconate ChEBI	-	carbon source
[Ref.: #43858]	acetate ChEBI	-	carbon source
[Ref.: #43858]	adipate ChEBI	-	carbon source
[Ref.: #43858]	amygdalin ChEBI	-	builds acid from
[Ref.: #43858]	arbutin ChEBI	-	builds acid from
[Ref.: #43858]	casein	+	hydrolysis
[Ref.: #43858]	cellobiose ChEBI	-	builds acid from
[Ref.: #43858]	citrate ChEBI	-	carbon source
[Ref.: #43858]	D-arabinose ChEBI	+/-	builds acid from
[Ref.: #43858]	D-arabitol ChEBI	+	builds acid from
[Ref.: #43858]	D-fructose ChEBI	+/-	builds acid from
[Ref.: #43858]	D-fucose ChEBI	+/-	builds acid from
[Ref.: #43858]	D-galactose ChEBI	+/-	builds acid from
[Ref.: #43858]	D-glucose ChEBI	-	builds acid from
[Ref.: #43858]	D-glucose ChEBI	-	carbon source
[Ref.: #43858]	D-lyxose ChEBI	+/-	builds acid from
[Ref.: #43858]	D-mannitol ChEBI	-	carbon source
[Ref.: #43858]	D-mannitol ChEBI	+/-	builds acid from
[Ref.: #43858]	D-mannose ChEBI	-	builds acid from
[Ref.: #43858]	D-mannose ChEBI	-	carbon source
[Ref.: #43858]	D-ribose ChEBI	-	carbon source
[Ref.: #43858]	D-ribose ChEBI	+/-	builds acid from
[Ref.: #43858]	D-sorbitol ChEBI	-	builds acid from
[Ref.: #43858]	D-sorbitol ChEBI	-	carbon source
[Ref.: #43858]	D-tagatose ChEBI	-	builds acid from
[Ref.: #43858]	D-xylose ChEBI	+/-	builds acid from
[Ref.: #43858]	decanoate ChEBI	-	carbon source
[Ref.: #43858]	erythritol ChEBI	-	builds acid from
[Ref.: #43858]	esculin ChEBI	+/-	builds acid from
[Ref.: #43858]	esculin ferric citrate	+/-	hydrolysis
[Ref.: #43858]	galactitol ChEBI	-	builds acid from
[Ref.: #43858]	gelatin ChEBI	+	hydrolysis
[Ref.: #43858]	gentiobiose ChEBI	-	builds acid from
[Ref.: #43858]	gluconate ChEBI	-	builds acid from
[Ref.: #43858]	gluconate ChEBI	-	carbon source
[Ref.: #43858]	glycerol ChEBI	+/-	builds acid from
[Ref.: #43858]	glycogen ChEBI	-	builds acid from
[Ref.: #43858]	glycogen ChEBI	-	carbon source
[Ref.: #43858]	inulin ChEBI	-	builds acid from
[Ref.: #43858]	itaconate ChEBI	-	carbon source
[Ref.: #43858]	L-alanine 4-nitroanilide	-	carbon source
[Ref.: #43858]	L-arabinose ChEBI	-	carbon source
[Ref.: #43858]	L-arabinose ChEBI	+	builds acid from
[Ref.: #43858]	L-arabitol ChEBI	-	builds acid from
[Ref.: #43858]	L-fucose ChEBI	-	carbon source
[Ref.: #43858]	L-fucose ChEBI	+	builds acid from
[Ref.: #43858]	L-histidine ChEBI	-	carbon source
[Ref.: #43858]	L-malate ChEBI	-	carbon source
[Ref.: #43858]	L-proline ChEBI	-	carbon source
[Ref.: #43858]	L-rhamnose ChEBI	-	builds acid from
[Ref.: #43858]	L-rhamnose ChEBI	-	carbon source
[Ref.: #43858]	L-serine ChEBI	-	carbon source
[Ref.: #43858]	L-sorbose ChEBI	-	builds acid from
[Ref.: #43858]	L-xylose ChEBI	-	builds acid from
[Ref.: #43858]	lactate ChEBI	-	carbon source
[Ref.: #43858]	lactose ChEBI	-	builds acid from
[Ref.: #43858]	maltose ChEBI	-	builds acid from
[Ref.: #43858]	maltose hydrate	-	carbon source
[Ref.: #43858]	melezitose ChEBI	-	builds acid from
[Ref.: #43858]	melibiose ChEBI	-	builds acid from
[Ref.: #43858]	melibiose ChEBI	-	carbon source
[Ref.: #43858]	methyl alpha-D-glucopyranoside ChEBI	-	builds acid from
[Ref.: #43858]	methyl alpha-D-mannoside ChEBI	-	builds acid from
[Ref.: #43858]	methyl beta-D-xylopyranoside ChEBI	-	builds acid from
[Ref.: #43858]	myo-inositol ChEBI	-	carbon source
[Ref.: #43858]	myo-inositol ChEBI	+/-	builds acid from
[Ref.: #43858]	N-acetylglucosamine ChEBI	-	builds acid from
[Ref.: #43858]	N-acetylglucosamine ChEBI	-	carbon source
[Ref.: #43858]	phenylacetate ChEBI	-	carbon source
[Ref.: #43858]	propionate ChEBI	-	carbon source
[Ref.: #43858]	raffinose ChEBI	-	builds acid from
[Ref.: #43858]	ribitol ChEBI	+/-	builds acid from
[Ref.: #43858]	salicin ChEBI	-	builds acid from
[Ref.: #43858]	salicin ChEBI	-	carbon source
[Ref.: #43858]	sodium malonate ChEBI	-	carbon source
[Ref.: #43858]	starch ChEBI	-	builds acid from
[Ref.: #43858]	starch ChEBI	-	hydrolysis
[Ref.: #43858]	suberic acid ChEBI	-	carbon source
[Ref.: #43858]	sucrose ChEBI	-	builds acid from
[Ref.: #43858]	sucrose ChEBI	-	carbon source
[Ref.: #43858]	trehalose ChEBI	-	builds acid from
[Ref.: #43858]	turanose ChEBI	-	builds acid from
[Ref.: #43858]	tween 20 ChEBI	-	hydrolysis
[Ref.: #43858]	tween 80 ChEBI	-	hydrolysis
[Ref.: #43858]	valerate ChEBI	-	carbon source
[Ref.: #43858]	xylitol ChEBI	-	builds acid from
	Only first 10 entries are displayed. Click here to see all.

	Enzyme	Enzyme activity	EC number
[Ref.: #43858]	acid phosphatase	+	3.1.3.2
[Ref.: #43858]	alkaline phosphatase	+	3.1.3.1
[Ref.: #43858]	alpha-chymotrypsin	+/-	3.4.21.1
[Ref.: #43858]	alpha-fucosidase	-	3.2.1.51
[Ref.: #43858]	alpha-galactosidase	-	3.2.1.22
[Ref.: #43858]	alpha-glucosidase	-	3.2.1.20
[Ref.: #43858]	alpha-mannosidase	-	3.2.1.24
[Ref.: #43858]	arginine dihydrolase	-	3.5.3.6
[Ref.: #43858]	beta-galactosidase	-	3.2.1.23
[Ref.: #43858]	beta-glucosidase	-	3.2.1.21
[Ref.: #43858]	beta-glucuronidase	-	3.2.1.31
[Ref.: #43858]	catalase	-	1.11.1.6
[Ref.: #43858]	cystine arylamidase	+	3.4.11.3
[Ref.: #43858]	cytochrome oxidase	+	1.9.3.1
[Ref.: #43858]	esterase (C 4)	+/-
[Ref.: #43858]	esterase Lipase (C 8)	+/-
[Ref.: #43858]	leucine arylamidase	+	3.4.11.1
[Ref.: #43858]	lipase (C 14)	-
[Ref.: #43858]	N-acetyl-beta-glucosaminidase	-	3.2.1.52
[Ref.: #43858]	naphthol-AS-BI-phosphohydrolase	+/-
[Ref.: #43858]	protease	+
[Ref.: #43858]	trypsin	+/-	3.4.21.4
[Ref.: #43858]	urease	-	3.5.1.5
[Ref.: #43858]	valine arylamidase	+
	Only first 10 entries are displayed. Click here to see all.

Fatty acid profile

Metadata FA analysis

Reference

[Ref.: #43858]

Fatty acid	Percentage
C18:0	24.5
C15:0 iso	19
iso-C17:1 B / iso-C17:1 B	17.5
C16:0	13.5
C15:1 iso G	3.4
C17:0 iso 3OH	2.6
C17:1ω6c	2.4
C16:0 iso	1.9
C16:1ω7c / C15:0 iso 2OH	1.8
C14:0	1.7
C16:0 N alcohol	1.6
C15:0 iso 3OH	1.4
C17:0 iso	1.2
C16:1ω5c	1.2
C18:0 anteiso / C18:2ω6,9c	1.2
C17:0	1.1

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #43858]	Sample type/isolated from	soil sample collected at Namyangju-si, Gyeonggi-do, Republic of Korea
[Ref.: #43858]	Geographic location (country and/or sea, region)	Namyangju-si, Gyeonggi-do
[Ref.: #43858]	Country	Republic of Korea
[Ref.: #43858]	Country ISO 3 Code	KOR
[Ref.: #43858]	Continent	Asia
[Ref.: #43858]	Geographic location	37.6072°/127.1690°
[Ref.: #43858]	Enrichment culture	R2A agar
[Ref.: #43858]	Enrichment culture duration	1 week
[Ref.: #43858]	Enrichment culture temperature	25 ̊C

[Ref.: #67770]	Sample type/isolated from	Soil at Namyangju-si
[Ref.: #67770]	Geographic location (country and/or sea, region)	Gyeonggi-do
[Ref.: #67770]	Country	Republic of Korea
[Ref.: #67770]	Country ISO 3 Code	KOR
[Ref.: #67770]	Continent	Asia

[Ref.: #67771]	Sample type/isolated from	From soil
[Ref.: #67771]	Geographic location (country and/or sea, region)	Namyangju-si, Gyeonggi-do
[Ref.: #67771]	Country	Republic of Korea
[Ref.: #67771]	Country ISO 3 Code	KOR
[Ref.: #67771]	Continent	Asia
[Ref.: #67771]	Geographic location	37.6072°/127.1690°

Isolation sources categories

#Environmental

#Terrestrial

#Soil

What are isolation sources categories?

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #43858]	16S rRNA gene sequence	LC177335.1		GenBank
[Ref.: #67770]	Adhaeribacter terrae gene for 16S ribosomal RNA, partial sequence	LC177335	1457	ENA	1892554 tax ID

[Ref.: #43858]	GC-content	44 mol%	high performance liquid chromatography (HPLC)
[Ref.: #67771]	GC-content	44.0 mol%

Availability in culture collections External links

[Ref.: #43858]

Culture collection no.

KCTC 52512, JCM 31652

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Adhaeribacter terrae sp. nov., a novel bacterium isolated from soil.	Elderiny N, Lee JJ, Lee YH, Park SJ, Lee SY, Park S, Cho YJ, Ten LN, Jung HY	Int J Syst Evol Microbiol	10.1099/ijsem.0.002048	2017	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#43858

Nabil Elderiny, Jae-Jin Lee, Yeon-Hee Lee, Su-Jin Park, Seung-Yeol Lee, Sangkyu Park, Young-Je Cho, Leonid N. Ten, Hee-Young Jung: Adhaeribacter terrae sp. nov., a novel bacterium isolated from soil. IJSEM 67: 2922 - 2927 2017 ( DOI 10.1099/ijsem.0.002048 , PubMed 28820126 )

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#67771 Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;
* These data were automatically processed and therefore are not curated

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