Name: Adhaeribacter terrae HY02
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 140958

Type strain:

Species: Adhaeribacter terrae

Strain Designation: HY02

Culture col. no.: KCTC 52512, JCM 31652

Strain history: <- Hee-Young Jung, Kyungpook National Univ., Korea

NCBI tax ID(s): 1892554 (species)

Special Collections

Section

Adhaeribacter terrae HY02 is an aerobe, Gram-negative, rod-shaped bacterium that was isolated from soil sample collected at Namyangju-si, Gyeonggi-do, Republic of Korea.

Gram-negative
rod-shaped
aerobe
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacteroidota*
	Class	*Cytophagia*
	Order	*Cytophagales*
	Family	*Hymenobacteraceae*
	Genus	*Adhaeribacter*
	Species	**Adhaeribacter terrae**
	Full Scientific Name (LPSN)	Adhaeribacter terrae Elderiny et al. 2017

Information on morphological and physiological properties Morphology

[Ref.: #43858]	Gram stain	negative
[Ref.: #67771]	Gram stain	negative

[Ref.: #43858]	Cell length	1.5-2.3 µm

[Ref.: #43858]	Cell width	0.7-0.9 µm

[Ref.: #43858]	Cell shape	rod-shaped
[Ref.: #67771]	Cell shape	rod-shaped

[Ref.: #43858]	Colony color	red
[Ref.: #43858]	Incubation period	3 days
[Ref.: #43858]	Cultivation medium used	R2A agar

Information on culture and growth conditions Culture and growth conditions

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Culture medium

Reasoner's 2A agar (R2A)

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Culture medium growth

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Culture medium

LB (Luria-Bertani) MEDIUM

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Culture medium growth

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Culture medium

Nutrient agar (NA)

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Culture medium growth

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Culture medium

Tryptic soy agar

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Culture medium growth

		Temperature
[Ref.: #43858]	growth	15-30 °C
[Ref.: #43858]	optimum	25 °C
[Ref.: #67770]	growth	25 °C
[Ref.: #67771]	growth	25 °C

	pH	Kind of pH		pH
[Ref.: #43858]			optimum	7
[Ref.: #43858]			growth	7.0-8.0

Information on physiology and metabolism Physiology and metabolism

[Ref.: #67771]

Oxygen tolerance

aerobe

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #43858]		NaCl		growth	0-1	%(w/v)

[Ref.: #43858]	Observation	quinone MK-7
[Ref.: #67771]	Observation	quinones: MK-7

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #43858]	2-dehydro-D-gluconate ChEBI	-	builds acid from
[Ref.: #43858]	2-dehydro-D-gluconate ChEBI	-	carbon source
[Ref.: #43858]	3-hydroxybenzoate ChEBI	-	carbon source
[Ref.: #43858]	3-hydroxybutyrate ChEBI	-	carbon source
[Ref.: #43858]	4-hydroxybenzoate ChEBI	-	carbon source
[Ref.: #43858]	5-dehydro-D-gluconate ChEBI	-	builds acid from
[Ref.: #43858]	5-dehydro-D-gluconate ChEBI	-	carbon source
[Ref.: #43858]	acetate ChEBI	-	carbon source
[Ref.: #43858]	adipate ChEBI	-	carbon source
[Ref.: #43858]	amygdalin ChEBI	-	builds acid from
[Ref.: #43858]	arbutin ChEBI	-	builds acid from
[Ref.: #43858]	casein	+	hydrolysis
[Ref.: #43858]	cellobiose ChEBI	-	builds acid from
[Ref.: #43858]	citrate ChEBI	-	carbon source
[Ref.: #43858]	D-arabinose ChEBI	+/-	builds acid from
[Ref.: #43858]	D-arabitol ChEBI	+	builds acid from
[Ref.: #43858]	D-fructose ChEBI	+/-	builds acid from
[Ref.: #43858]	D-fucose ChEBI	+/-	builds acid from
[Ref.: #43858]	D-galactose ChEBI	+/-	builds acid from
[Ref.: #43858]	D-glucose ChEBI	-	builds acid from
[Ref.: #43858]	D-glucose ChEBI	-	carbon source
[Ref.: #43858]	D-lyxose ChEBI	+/-	builds acid from
[Ref.: #43858]	D-mannitol ChEBI	-	carbon source
[Ref.: #43858]	D-mannitol ChEBI	+/-	builds acid from
[Ref.: #43858]	D-mannose ChEBI	-	builds acid from
[Ref.: #43858]	D-mannose ChEBI	-	carbon source
[Ref.: #43858]	D-ribose ChEBI	-	carbon source
[Ref.: #43858]	D-ribose ChEBI	+/-	builds acid from
[Ref.: #43858]	D-sorbitol ChEBI	-	builds acid from
[Ref.: #43858]	D-sorbitol ChEBI	-	carbon source
[Ref.: #43858]	D-tagatose ChEBI	-	builds acid from
[Ref.: #43858]	D-xylose ChEBI	+/-	builds acid from
[Ref.: #43858]	decanoate ChEBI	-	carbon source
[Ref.: #43858]	erythritol ChEBI	-	builds acid from
[Ref.: #43858]	esculin ChEBI	+/-	builds acid from
[Ref.: #43858]	esculin ferric citrate	+/-	hydrolysis
[Ref.: #43858]	galactitol ChEBI	-	builds acid from
[Ref.: #43858]	gelatin ChEBI	+	hydrolysis
[Ref.: #43858]	gentiobiose ChEBI	-	builds acid from
[Ref.: #43858]	gluconate ChEBI	-	builds acid from
[Ref.: #43858]	gluconate ChEBI	-	carbon source
[Ref.: #43858]	glycerol ChEBI	+/-	builds acid from
[Ref.: #43858]	glycogen ChEBI	-	builds acid from
[Ref.: #43858]	glycogen ChEBI	-	carbon source
[Ref.: #43858]	inulin ChEBI	-	builds acid from
[Ref.: #43858]	itaconate ChEBI	-	carbon source
[Ref.: #43858]	L-alanine 4-nitroanilide	-	carbon source
[Ref.: #43858]	L-arabinose ChEBI	-	carbon source
[Ref.: #43858]	L-arabinose ChEBI	+	builds acid from
[Ref.: #43858]	L-arabitol ChEBI	-	builds acid from
[Ref.: #43858]	L-fucose ChEBI	-	carbon source
[Ref.: #43858]	L-fucose ChEBI	+	builds acid from
[Ref.: #43858]	L-histidine ChEBI	-	carbon source
[Ref.: #43858]	L-malate ChEBI	-	carbon source
[Ref.: #43858]	L-proline ChEBI	-	carbon source
[Ref.: #43858]	L-rhamnose ChEBI	-	builds acid from
[Ref.: #43858]	L-rhamnose ChEBI	-	carbon source
[Ref.: #43858]	L-serine ChEBI	-	carbon source
[Ref.: #43858]	L-sorbose ChEBI	-	builds acid from
[Ref.: #43858]	L-xylose ChEBI	-	builds acid from
[Ref.: #43858]	lactate ChEBI	-	carbon source
[Ref.: #43858]	lactose ChEBI	-	builds acid from
[Ref.: #43858]	maltose ChEBI	-	builds acid from
[Ref.: #43858]	maltose hydrate	-	carbon source
[Ref.: #43858]	melezitose ChEBI	-	builds acid from
[Ref.: #43858]	melibiose ChEBI	-	builds acid from
[Ref.: #43858]	melibiose ChEBI	-	carbon source
[Ref.: #43858]	methyl alpha-D-glucopyranoside ChEBI	-	builds acid from
[Ref.: #43858]	methyl alpha-D-mannoside ChEBI	-	builds acid from
[Ref.: #43858]	methyl beta-D-xylopyranoside ChEBI	-	builds acid from
[Ref.: #43858]	myo-inositol ChEBI	-	carbon source
[Ref.: #43858]	myo-inositol ChEBI	+/-	builds acid from
[Ref.: #43858]	N-acetylglucosamine ChEBI	-	builds acid from
[Ref.: #43858]	N-acetylglucosamine ChEBI	-	carbon source
[Ref.: #43858]	phenylacetate ChEBI	-	carbon source
[Ref.: #43858]	propionate ChEBI	-	carbon source
[Ref.: #43858]	raffinose ChEBI	-	builds acid from
[Ref.: #43858]	ribitol ChEBI	+/-	builds acid from
[Ref.: #43858]	salicin ChEBI	-	builds acid from
[Ref.: #43858]	salicin ChEBI	-	carbon source
[Ref.: #43858]	sodium malonate ChEBI	-	carbon source
[Ref.: #43858]	starch ChEBI	-	builds acid from
[Ref.: #43858]	starch ChEBI	-	hydrolysis
[Ref.: #43858]	suberic acid ChEBI	-	carbon source
[Ref.: #43858]	sucrose ChEBI	-	builds acid from
[Ref.: #43858]	sucrose ChEBI	-	carbon source
[Ref.: #43858]	trehalose ChEBI	-	builds acid from
[Ref.: #43858]	turanose ChEBI	-	builds acid from
[Ref.: #43858]	tween 20 ChEBI	-	hydrolysis
[Ref.: #43858]	tween 80 ChEBI	-	hydrolysis
[Ref.: #43858]	valerate ChEBI	-	carbon source
[Ref.: #43858]	xylitol ChEBI	-	builds acid from
	Only first 10 entries are displayed. Click here to see all.

	Enzyme	Enzyme activity	EC number
[Ref.: #43858]	acid phosphatase	+	3.1.3.2
[Ref.: #43858]	alkaline phosphatase	+	3.1.3.1
[Ref.: #43858]	alpha-chymotrypsin	+/-	3.4.21.1
[Ref.: #43858]	alpha-fucosidase	-	3.2.1.51
[Ref.: #43858]	alpha-galactosidase	-	3.2.1.22
[Ref.: #43858]	alpha-glucosidase	-	3.2.1.20
[Ref.: #43858]	alpha-mannosidase	-	3.2.1.24
[Ref.: #43858]	arginine dihydrolase	-	3.5.3.6
[Ref.: #43858]	beta-galactosidase	-	3.2.1.23
[Ref.: #43858]	beta-glucosidase	-	3.2.1.21
[Ref.: #43858]	beta-glucuronidase	-	3.2.1.31
[Ref.: #43858]	catalase	-	1.11.1.6
[Ref.: #43858]	cystine arylamidase	+	3.4.11.3
[Ref.: #43858]	cytochrome oxidase	+	1.9.3.1
[Ref.: #43858]	esterase (C 4)	+/-
[Ref.: #43858]	esterase Lipase (C 8)	+/-
[Ref.: #43858]	leucine arylamidase	+	3.4.11.1
[Ref.: #43858]	lipase (C 14)	-
[Ref.: #43858]	N-acetyl-beta-glucosaminidase	-	3.2.1.52
[Ref.: #43858]	naphthol-AS-BI-phosphohydrolase	+/-
[Ref.: #43858]	protease	+
[Ref.: #43858]	trypsin	+/-	3.4.21.4
[Ref.: #43858]	urease	-	3.5.1.5
[Ref.: #43858]	valine arylamidase	+
	Only first 10 entries are displayed. Click here to see all.

Fatty acid profile

Metadata FA analysis

Reference

[Ref.: #43858]

Fatty acid	Percentage
C18:0	24.5
C15:0 iso	19
iso-C17:1 B / iso-C17:1 B	17.5
C16:0	13.5
C15:1 iso G	3.4
C17:0 iso 3OH	2.6
C17:1ω6c	2.4
C16:0 iso	1.9
C16:1ω7c / C15:0 iso 2OH	1.8
C14:0	1.7
C16:0 N alcohol	1.6
C15:0 iso 3OH	1.4
C17:0 iso	1.2
C16:1ω5c	1.2
C18:0 anteiso / C18:2ω6,9c	1.2
C17:0	1.1

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #43858]	Sample type/isolated from	soil sample collected at Namyangju-si, Gyeonggi-do, Republic of Korea
[Ref.: #43858]	Geographic location (country and/or sea, region)	Namyangju-si, Gyeonggi-do
[Ref.: #43858]	Country	Republic of Korea
[Ref.: #43858]	Country ISO 3 Code	KOR
[Ref.: #43858]	Continent	Asia
[Ref.: #43858]	Geographic location	37.6072°/127.1690°
[Ref.: #43858]	Enrichment culture	R2A agar
[Ref.: #43858]	Enrichment culture duration	1 week
[Ref.: #43858]	Enrichment culture temperature	25 ̊C

[Ref.: #67770]	Sample type/isolated from	Soil at Namyangju-si
[Ref.: #67770]	Geographic location (country and/or sea, region)	Gyeonggi-do
[Ref.: #67770]	Country	Republic of Korea
[Ref.: #67770]	Country ISO 3 Code	KOR
[Ref.: #67770]	Continent	Asia

[Ref.: #67771]	Sample type/isolated from	From soil
[Ref.: #67771]	Geographic location (country and/or sea, region)	Namyangju-si, Gyeonggi-do
[Ref.: #67771]	Country	Republic of Korea
[Ref.: #67771]	Country ISO 3 Code	KOR
[Ref.: #67771]	Continent	Asia
[Ref.: #67771]	Geographic location	37.6072°/127.1690°
* marker position based on {}

Isolation sources categories

#Environmental

#Terrestrial

#Soil

What are isolation sources categories?

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Adhaeribacter terrae gene for 16S ribosomal RNA, partial sequence	LC177335	1457	GenBank ENA	1892554 tax ID
[Ref.: #43858]	Adhaeribacter terrae gene for 16S ribosomal RNA, partial sequence	LC177335.1		GenBank ENA

[Ref.: #43858]	GC-content	44 mol%	high performance liquid chromatography (HPLC)
[Ref.: #67771]	GC-content	44.0 mol%

Availability in culture collections External links

[Ref.: #43858]

Culture collection no.

KCTC 52512, JCM 31652

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Adhaeribacter terrae sp. nov., a novel bacterium isolated from soil.	Elderiny N, Lee JJ, Lee YH, Park SJ, Lee SY, Park S, Cho YJ, Ten LN, Jung HY	Int J Syst Evol Microbiol	10.1099/ijsem.0.002048	2017	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#43858

Nabil Elderiny, Jae-Jin Lee, Yeon-Hee Lee, Su-Jin Park, Seung-Yeol Lee, Sangkyu Park, Young-Je Cho, Leonid N. Ten, Hee-Young Jung: Adhaeribacter terrae sp. nov., a novel bacterium isolated from soil. IJSEM 67: 2922 - 2927 2017 ( DOI 10.1099/ijsem.0.002048 , PubMed 28820126 )

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#67771 Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;
* These data were automatically processed and therefore are not curated

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