Daejeonia ginsenosidivorans (KACC 18626, LMG 29198, NP5)

Name: Daejeonia ginsenosidivorans (KACC 18626, LMG 29198, NP5)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 140959

Type strain

Strain Designation NP5

Culture col. no. KACC 18626 LMG 29198 NP5

NCBI tax ID(s) 1813881

Special Collections Literature strains

Links

Daejeonia ginsenosidivorans NP5 is an aerobe, Gram-negative, rod-shaped bacterium that forms circular colonies and was isolated from water of Kaist Duck Lake in Daejeon city, Korea.

Gram-negative rod-shaped colony-forming aerobe 16S sequence Bacteria

Name and taxonomic classification

SI-ID 271234

LMG 29198

@ref 20215

Last LPSN update 2026-05-29 08:39:50

Domain Bacteria

Phylum Bacteroidota

Class Flavobacteriia

Order Flavobacteriales

Family Flavobacteriaceae

Genus Daejeonia

Species Daejeonia ginsenosidivorans

Full scientific name Daejeonia ginsenosidivorans Siddiqi et al. 2017

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape	Motility
43859	negative	1.2-3.0 µm	0.2-0.5 µm	rod-shaped

Colony morphology

@ref	Colony color	Colony shape	Incubation period	Medium used
43859	light-yellow	circular	2-3 days	Tryptic soy agar

Pigmentation

@ref	Production	Name
43859		flexirubin type pigments

Culture and growth conditions

Culture medium

@ref	Name	Growth
43859	Nutrient agar (NA)
43859	Reasoner's 2A agar (R2A)
43859	Tryptic soy agar
43859	LB (Luria-Bertani) MEDIUM
43859	MacConkey agar

Culture temp

@ref	Growth	Type	Temperature (°C)
43859	positive	growth	18-37
43859	positive	optimum	30

Culture pH

@ref	Ability	Type	PH
43859	positive	optimum	6.0-7.0
43859	positive	growth	5.5-8.0

Physiology and metabolism

Oxygen tolerance

43859

Oxygen toleranceaerobe

Spore formation

43859

Spore formationno

Halophily

@ref	Salt	Growth	Tested relation	Concentration
43859	NaCl	positive	growth	0.5-3 %(w/v)
43859	NaCl	positive	optimum	0-0.5 %(w/v)

Observation

43859

Observationquinone MK-6

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
43859	16808 ChEBI	2-dehydro-D-gluconate	-	builds acid from
43859	16193 ChEBI	3-hydroxybenzoate	-	builds acid from
43859	37054 ChEBI	3-hydroxybutyrate	-	builds acid from
43859	17879 ChEBI	4-hydroxybenzoate	-	builds acid from
43859	58143 ChEBI	5-dehydro-D-gluconate	-	builds acid from
43859	58143 ChEBI	5-dehydro-D-gluconate	-	carbon source
43859	30089 ChEBI	acetate	+	builds acid from
43859	30089 ChEBI	acetate	+	carbon source
43859	17128 ChEBI	adipate	-	builds acid from
43859	85146 ChEBI	carboxymethylcellulose	-	hydrolysis
43859		casein	+	hydrolysis
43859	16947 ChEBI	citrate	-	builds acid from
43859	16947 ChEBI	citrate	-	carbon source
43859	17634 ChEBI	D-glucose	+	builds acid from
43859	17634 ChEBI	D-glucose	+	carbon source
43859	16899 ChEBI	D-mannitol	-	builds acid from
43859	16024 ChEBI	D-mannose	+	builds acid from
43859	16024 ChEBI	D-mannose	+	carbon source
43859	16988 ChEBI	D-ribose	-	builds acid from
43859	17924 ChEBI	D-sorbitol	-	builds acid from
43859	27689 ChEBI	decanoate	-	builds acid from
43859	16991 ChEBI	dna	+	hydrolysis
43859	4853 ChEBI	esculin	+	hydrolysis
43859	5291 ChEBI	gelatin	+/-	hydrolysis
43859	24265 ChEBI	gluconate	-	builds acid from
43859	24265 ChEBI	gluconate	-	carbon source
43859	28087 ChEBI	glycogen	+	builds acid from
43859	28087 ChEBI	glycogen	+	carbon source
43859	17240 ChEBI	itaconate	-	builds acid from
43859	16977 ChEBI	L-alanine	+	carbon source
43859		L-alanine 4-nitroanilide	+	builds acid from
43859	30849 ChEBI	L-arabinose	-	builds acid from
43859	18287 ChEBI	L-fucose	-	builds acid from
43859	15971 ChEBI	L-histidine	-	builds acid from
43859	17203 ChEBI	L-proline	+	builds acid from
43859	17203 ChEBI	L-proline	+	carbon source
43859	62345 ChEBI	L-rhamnose	-	builds acid from
43859	17115 ChEBI	L-serine	+	builds acid from
43859	17115 ChEBI	L-serine	+	carbon source
43859	24996 ChEBI	lactate	+	builds acid from
43859	24996 ChEBI	lactate	+	carbon source
43859	25115 ChEBI	malate	-	builds acid from
43859	25115 ChEBI	malate	-	carbon source
43859	15792 ChEBI	malonate	+	builds acid from
43859	15792 ChEBI	malonate	+	carbon source
43859	17306 ChEBI	maltose	+	builds acid from
43859	17306 ChEBI	maltose	+	carbon source
43859	28053 ChEBI	melibiose	+	builds acid from
43859	28053 ChEBI	melibiose	+	carbon source
43859	17268 ChEBI	myo-inositol	-	builds acid from
43859	506227 ChEBI	N-acetylglucosamine	+	builds acid from
43859	506227 ChEBI	N-acetylglucosamine	+	carbon source
43859	17632 ChEBI	nitrate	-	reduction
43859	18401 ChEBI	phenylacetate	-	builds acid from
43859	17272 ChEBI	propionate	+	builds acid from
43859	17272 ChEBI	propionate	+	carbon source
43859	17814 ChEBI	salicin	-	builds acid from
43859	17814 ChEBI	salicin	-	carbon source
43859	28017 ChEBI	starch	+	hydrolysis
43859	9300 ChEBI	suberic acid	-	builds acid from
43859	17992 ChEBI	sucrose	-	builds acid from
43859	53424 ChEBI	tween 20	-	hydrolysis
43859	31011 ChEBI	valerate	+	builds acid from
43859	31011 ChEBI	valerate	+	carbon source

Metabolite production

@ref	Chebi-ID	Metabolite	Production
43859	35581 ChEBI	indole

Enzymes

@ref	Value	Activity	Ec
43859	acid phosphatase	+	3.1.3.2
43859	alkaline phosphatase	+	3.1.3.1
43859	alpha-chymotrypsin	+	3.4.21.1
43859	alpha-fucosidase	-	3.2.1.51
43859	alpha-galactosidase	-	3.2.1.22
43859	alpha-glucosidase	+	3.2.1.20
43859	alpha-mannosidase	-	3.2.1.24
43859	beta-galactosidase	-	3.2.1.23
43859	beta-glucosidase	+	3.2.1.21
43859	beta-glucuronidase	-	3.2.1.31
43859	catalase	+	1.11.1.6
43859	cystine arylamidase	+	3.4.11.3
43859	cytochrome oxidase	+	1.9.3.1
43859	esterase (C 4)	+
43859	esterase Lipase (C 8)	+
43859	leucine arylamidase	+	3.4.11.1
43859	lipase (C 14)	+
43859	N-acetyl-beta-glucosaminidase	-	3.2.1.52
43859	naphthol-AS-BI-phosphohydrolase	+
43859	trypsin	+	3.4.21.4
43859	urease	-	3.5.1.5
43859	valine arylamidase	+

Fatty acid profile

Metadata FA analysis

@ref

43859

Fatty acid	Percentage
C15:0 iso	27.7
C17:0 iso 3OH	13.6
C16:0 iso 3OH	11.1
C18:0 3OH	8.5
C15:0 anteiso	7.5
C16:1ω7c / C16:1ω6c	6.3
C16:0 iso	4.6
C14:0 iso	3.5
C13:0 iso	3.4
C15:0 iso 3OH	2.9
iso-C17:1ω9c/C16:0 10-methyl	2.8
C16:1 iso H	2
C17:1 iso I /C17:1 anteiso B	1.2
C16:0	1.1
C18:1ω5c	1
C17:0 2OH	0.9
C17:1ω6c	0.6
C16:0 3OH	0.6
C14:0 iso 3OH	0.5
C15:0 2OH	0.5

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Aquatic	#Lake (large)

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent	Enrichment culture	Enrichment culture duration	Enrichment culture temperature
43859	water of Kaist Duck Lake in Daejeon city, Korea	Daejeon city	Republic of Korea	KOR	Asia	R2A agar	7 days	30

Interaction and safety

Sequence information

16S sequences

@ref	Description	Accession	Database
43859	Daejeonia ginsenosidivorans strain NP5 16S ribosomal RNA gene, partial sequence	KT950745

GC content

@ref	GC-content (mol%)	Method
43859	44.8	high performance liquid chromatography (HPLC)

Genome-based predictions

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Daejeonia ginsenosidivorans gen. nov., sp. nov., a ginsenoside-transforming bacterium isolated from lake water.	Siddiqi MZ, Choi GM, Kim MS, Im WT	Int J Syst Evol Microbiol	10.1099/ijsem.0.001994	2017

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#43859	Muhammad Zubair Siddiqi, Gyu-Min Choi, Mi-Sun Kim, Wan-Taek Im: Daejeonia ginsenosidivorans gen. nov., sp. nov., a ginsenoside-transforming bacterium isolated from lake water. IJSEM 67: 2665 - 2671 2017 ( DOI 10.1099/ijsem.0.001994 , PubMed 28809138 )
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Daejeonia ginsenosidivorans (KACC 18626, LMG 29198, NP5)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Pigmentation

Culture and growth conditions

Culture medium

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Observation

Metabolite utilization

Metabolite production

Enzymes

Fatty acid profile

Isolation, sampling and environmental information

Isolation source categories

Isolation

Interaction and safety

Sequence information

16S sequences

GC content

Genome-based predictions

Literature

Literature

References

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