Strain identifier

BacDive ID: 140958

Type strain: Yes

Species: Adhaeribacter terrae

Strain Designation: HY02

Strain history: <- Hee-Young Jung, Kyungpook National Univ., Korea

NCBI tax ID(s): 1892554 (species)

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General

@ref: 43858

BacDive-ID: 140958

keywords: 16S sequence, Bacteria, aerobe, Gram-negative, rod-shaped

description: Adhaeribacter terrae HY02 is an aerobe, Gram-negative, rod-shaped bacterium that was isolated from soil sample collected at Namyangju-si, Gyeonggi-do, Republic of Korea.

NCBI tax id

  • NCBI tax id: 1892554
  • Matching level: species

strain history

@refhistory
67770H.-Y. Jung; Kyungpook Natl. Univ., South Korea; HY02.
67771<- Hee-Young Jung, Kyungpook National Univ., Korea

doi: 10.13145/bacdive140958.20240510.9

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacteroidota
  • domain: Bacteria
  • phylum: Bacteroidota
  • class: Cytophagia
  • order: Cytophagales
  • family: Hymenobacteraceae
  • genus: Adhaeribacter
  • species: Adhaeribacter terrae
  • full scientific name: Adhaeribacter terrae Elderiny et al. 2017

@ref: 43858

domain: Bacteria

phylum: Bacteroidetes

class: Cytophagia

order: Cytophagales

family: Hymenobacteraceae

genus: Adhaeribacter

species: Adhaeribacter terrae

strain designation: HY02

type strain: yes

Morphology

cell morphology

@refgram staincell lengthcell widthcell shape
43858negative1.5-2.3 µm0.7-0.9 µmrod-shaped
67771rod-shaped
67771negative

colony morphology

  • @ref: 43858
  • colony color: red
  • incubation period: 3 days
  • medium used: R2A agar

Culture and growth conditions

culture medium

@refnamegrowth
43858LB (Luria-Bertani) MEDIUMno
43858Nutrient agar (NA)no
43858Reasoner's 2A agar (R2A)yes
43858Tryptic soy agarno

culture temp

@refgrowthtypetemperature
43858positivegrowth15-30
43858positiveoptimum25
67770positivegrowth25
67771positivegrowth25

culture pH

@refabilitytypepH
43858positivegrowth7.0-8.0
43858positiveoptimum7

Physiology and metabolism

oxygen tolerance

  • @ref: 67771
  • oxygen tolerance: aerobe

halophily

  • @ref: 43858
  • salt: NaCl
  • growth: positive
  • tested relation: growth
  • concentration: 0-1 %(w/v)

observation

@refobservation
43858quinone MK-7
67771quinones: MK-7

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
43858168082-dehydro-D-gluconate-builds acid from
43858581435-dehydro-D-gluconate-builds acid from
4385827613amygdalin-builds acid from
4385818305arbutin-builds acid from
4385817057cellobiose-builds acid from
4385817634D-glucose-builds acid from
4385816024D-mannose-builds acid from
4385817924D-sorbitol-builds acid from
4385816443D-tagatose-builds acid from
4385816813galactitol-builds acid from
4385817113erythritol-builds acid from
4385828066gentiobiose-builds acid from
4385824265gluconate-builds acid from
4385828087glycogen-builds acid from
4385815443inulin-builds acid from
4385818403L-arabitol-builds acid from
4385862345L-rhamnose-builds acid from
4385817266L-sorbose-builds acid from
4385865328L-xylose-builds acid from
4385817716lactose-builds acid from
4385817306maltose-builds acid from
438586731melezitose-builds acid from
4385828053melibiose-builds acid from
43858320061methyl alpha-D-glucopyranoside-builds acid from
4385843943methyl alpha-D-mannoside-builds acid from
4385874863methyl beta-D-xylopyranoside-builds acid from
43858506227N-acetylglucosamine-builds acid from
4385816634raffinose-builds acid from
4385817814salicin-builds acid from
4385828017starch-builds acid from
4385817992sucrose-builds acid from
4385827082trehalose-builds acid from
4385832528turanose-builds acid from
4385817151xylitol-builds acid from
43858168082-dehydro-D-gluconate-carbon source
43858161933-hydroxybenzoate-carbon source
43858178794-hydroxybenzoate-carbon source
43858581435-dehydro-D-gluconate-carbon source
4385830089acetate-carbon source
4385817128adipate-carbon source
4385827689decanoate-carbon source
4385816947citrate-carbon source
4385817634D-glucose-carbon source
4385816899D-mannitol-carbon source
4385816024D-mannose-carbon source
4385816988D-ribose-carbon source
4385817924D-sorbitol-carbon source
43858370543-hydroxybutyrate-carbon source
4385824996lactate-carbon source
4385824265gluconate-carbon source
4385828087glycogen-carbon source
4385817268myo-inositol-carbon source
4385817240itaconate-carbon source
43858L-alanine 4-nitroanilide-carbon source
4385830849L-arabinose-carbon source
4385818287L-fucose-carbon source
4385815971L-histidine-carbon source
4385815589L-malate-carbon source
4385817203L-proline-carbon source
4385862345L-rhamnose-carbon source
4385817115L-serine-carbon source
43858maltose hydrate-carbon source
4385828053melibiose-carbon source
43858506227N-acetylglucosamine-carbon source
4385818401phenylacetate-carbon source
4385817272propionate-carbon source
4385817814salicin-carbon source
4385862983sodium malonate-carbon source
438589300suberic acid-carbon source
4385817992sucrose-carbon source
4385831011valerate-carbon source
4385828017starch-hydrolysis
4385853424tween 20-hydrolysis
4385853426tween 80-hydrolysis
4385818333D-arabitol+builds acid from
4385830849L-arabinose+builds acid from
4385818287L-fucose+builds acid from
43858casein+hydrolysis
438585291gelatin+hydrolysis
4385815963ribitol+/-builds acid from
4385817108D-arabinose+/-builds acid from
4385815824D-fructose+/-builds acid from
4385828847D-fucose+/-builds acid from
4385812936D-galactose+/-builds acid from
4385862318D-lyxose+/-builds acid from
4385816899D-mannitol+/-builds acid from
4385816988D-ribose+/-builds acid from
4385865327D-xylose+/-builds acid from
438584853esculin+/-builds acid from
4385817754glycerol+/-builds acid from
4385817268myo-inositol+/-builds acid from
43858esculin ferric citrate+/-hydrolysis

enzymes

@refvalueactivityec
43858cytochrome oxidase+1.9.3.1
43858catalase-1.11.1.6
43858acid phosphatase+3.1.3.2
43858alkaline phosphatase+3.1.3.1
43858cystine arylamidase+3.4.11.3
43858leucine arylamidase+3.4.11.1
43858protease+
43858valine arylamidase+
43858alpha-chymotrypsin+/-3.4.21.1
43858esterase (C 4)+/-
43858esterase Lipase (C 8)+/-
43858naphthol-AS-BI-phosphohydrolase+/-
43858trypsin+/-3.4.21.4
43858N-acetyl-beta-glucosaminidase-3.2.1.52
43858arginine dihydrolase-3.5.3.6
43858alpha-fucosidase-3.2.1.51
43858alpha-galactosidase-3.2.1.22
43858beta-galactosidase-3.2.1.23
43858alpha-glucosidase-3.2.1.20
43858beta-glucosidase-3.2.1.21
43858beta-glucuronidase-3.2.1.31
43858lipase (C 14)-
43858alpha-mannosidase-3.2.1.24
43858urease-3.5.1.5

fatty acid profile

  • fatty acids

    @reffatty acidpercentage
    43858C18:0 anteiso / C18:2ω6,9c1.2
    43858C14:01.7
    43858C16:013.5
    43858C16:0 N alcohol1.6
    43858C16:1ω5c1.2
    43858C16:1ω7c / C15:0 iso 2OH1.8
    43858C17:01.1
    43858C17:1ω6c2.4
    43858C18:024.5
    43858C15:0 iso19
    43858C15:0 iso 3OH1.4
    43858C15:1 iso G3.4
    43858C16:0 iso1.9
    43858C17:0 iso1.2
    43858C17:0 iso 3OH2.6
    43858iso-C17:1 B / iso-C17:1 B17.5
  • type of FA analysis: whole cell analysis
  • incubation medium: R2A agar
  • agar/liquid: agar
  • incubation temperature: 30
  • incubation time: 3
  • software version: Sherlock 6.0
  • library/peak naming table: TSBA6
  • system: MIS MIDI
  • cutoff value:

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinentlatitudelongitudeenrichment cultureenrichment culture durationenrichment culture temperature
43858soil sample collected at Namyangju-si, Gyeonggi-do, Republic of KoreaNamyangju-si, Gyeonggi-doRepublic of KoreaKORAsia37.6072127.169R2A agar1 week25
67770Soil at Namyangju-siGyeonggi-doRepublic of KoreaKORAsia
67771From soilNamyangju-si, Gyeonggi-doRepublic of KoreaKORAsia37.6072127.169

isolation source categories

  • Cat1: #Environmental
  • Cat2: #Terrestrial
  • Cat3: #Soil

Sequence information

16S sequences

@refdescriptionaccessiondatabaselengthNCBI tax ID
43858Adhaeribacter terrae gene for 16S ribosomal RNA, partial sequenceLC177335.1nuccore
67770Adhaeribacter terrae gene for 16S ribosomal RNA, partial sequenceLC177335nuccore14571892554

GC content

@refGC-contentmethod
4385844high performance liquid chromatography (HPLC)
6777144.0

External links

@ref: 43858

culture collection no.: KCTC 52512, JCM 31652

literature

  • topic: Phylogeny
  • Pubmed-ID: 28820126
  • title: Adhaeribacter terrae sp. nov., a novel bacterium isolated from soil.
  • authors: Elderiny N, Lee JJ, Lee YH, Park SJ, Lee SY, Park S, Cho YJ, Ten LN, Jung HY
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijsem.0.002048
  • year: 2017
  • mesh: Bacterial Typing Techniques, Base Composition, Cytophagaceae/*classification/genetics/isolation & purification, DNA, Bacterial/genetics, Fatty Acids/chemistry, Nucleic Acid Hybridization, Phosphatidylethanolamines/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Republic of Korea, Sequence Analysis, DNA, *Soil Microbiology, Vitamin K 2/analogs & derivatives/chemistry
  • topic2: Transcriptome

Reference

@idauthorstitledoi/urljournalpubmed
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
43858Nabil Elderiny, Jae-Jin Lee, Yeon-Hee Lee, Su-Jin Park, Seung-Yeol Lee, Sangkyu Park, Young-Je Cho, Leonid N. Ten, Hee-Young JungAdhaeribacter terrae sp. nov., a novel bacterium isolated from soil10.1099/ijsem.0.002048IJSEM 67: 2922-2927 201728820126
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
67771Curators of the KCTChttps://kctc.kribb.re.kr/En/Kctc