Name: Erwinia endophytica BSTT30
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 140918

Type strain:

Species: Erwinia endophytica

Strain Designation: BSTT30

Culture col. no.: LMG 28457, CECT 8692

NCBI tax ID(s): 1563158 (species)

SI-ID 396506

LMG 28457, CECT 8692

Section

Erwinia endophytica BSTT30 is a facultative anaerobe, Gram-negative, motile bacterium that forms circular colonies and was isolated from The stems of potato plants cropped from soil.

colony-forming
Gram-negative
motile
rod-shaped
facultative anaerobe
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Enterobacterales*
	Family	*Erwiniaceae*
	Genus	*Erwinia*
	Species	**Erwinia endophytica**
	Full Scientific Name (LPSN)	Erwinia endophytica Ramírez-Bahena et al. 2016

Information on morphological and physiological properties Morphology

[Ref.: #43787]	Gram stain	negative

[Ref.: #43787]	Cell length	1.5-1.7 µm

[Ref.: #43787]	Cell width	0.8-0.9 µm

[Ref.: #43787]	Cell shape	rod-shaped

[Ref.: #43787]	Motility	yes

[Ref.: #43787]	Colony size	2-2.5 mm
[Ref.: #43787]	Colony color	Beige, translucent
[Ref.: #43787]	Colony shape	circular
[Ref.: #43787]	Incubation period	2 days
[Ref.: #43787]	Cultivation medium used	Nutrient agar

Information on culture and growth conditions Culture and growth conditions

[Ref.: #43787]

Culture medium

Nutrient agar (NA)

[Ref.: #43787]

Culture medium growth

	Temperatures	Kind of temperature		Temperature
[Ref.: #43787]			growth	5-35 °C

	pH	Kind of pH		pH
[Ref.: #43787]			growth	4.5-10

Information on physiology and metabolism Physiology and metabolism

[Ref.: #43787]

Oxygen tolerance

facultative anaerobe

[Ref.: #43787]

Ability of spore formation

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #43787]		NaCl		growth	0-6	%(w/v)

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #43787]	2,3-butanediol ChEBI	-	respiration
[Ref.: #43787]	2-dehydro-D-gluconate ChEBI	-	assimilation
[Ref.: #43787]	2-hydroxybutyrate ChEBI	-	respiration
[Ref.: #43787]	2-oxobutanoate ChEBI	-	respiration
[Ref.: #43787]	2-oxoglutarate ChEBI	-	respiration
[Ref.: #43787]	2-oxopentanoate ChEBI	-	respiration
[Ref.: #43787]	4-hydroxybutyrate ChEBI	-	respiration
[Ref.: #43787]	4-hydroxyphenylacetic acid ChEBI	-	respiration
[Ref.: #43787]	5-dehydro-D-gluconate ChEBI	-	assimilation
[Ref.: #43787]	acetate ChEBI	+/-	assimilation
[Ref.: #43787]	adipate ChEBI	-	assimilation
[Ref.: #43787]	alpha-cyclodextrin ChEBI	-	respiration
[Ref.: #43787]	alpha-D-glucose ChEBI	+	respiration
[Ref.: #43787]	alpha-lactose ChEBI	+	respiration
[Ref.: #43787]	amygdalin ChEBI	+	builds acid from
[Ref.: #43787]	arbutin ChEBI	+	builds acid from
[Ref.: #43787]	beta-hydroxybutyrate ChEBI	-	respiration
[Ref.: #43787]	bromosuccinate ChEBI	+/-	assimilation
[Ref.: #43787]	cellobiose ChEBI	+	builds acid from
[Ref.: #43787]	cellobiose ChEBI	+	respiration
[Ref.: #43787]	cis-aconitate ChEBI	-	respiration
[Ref.: #43787]	citrate ChEBI	+	assimilation
[Ref.: #43787]	citrate ChEBI	+	respiration
[Ref.: #43787]	D-alanine ChEBI	-	respiration
[Ref.: #43787]	D-arabinose ChEBI	+	builds acid from
[Ref.: #43787]	D-arabitol ChEBI	-	builds acid from
[Ref.: #43787]	D-arabitol ChEBI	-	respiration
[Ref.: #43787]	D-fructose ChEBI	+	respiration
[Ref.: #43787]	D-fucose ChEBI	+	builds acid from
[Ref.: #43787]	D-galactonic acid lactone ChEBI	+	respiration
[Ref.: #43787]	D-galactose ChEBI	+	respiration
[Ref.: #43787]	D-galacturonic acid ChEBI	-	respiration
[Ref.: #43787]	D-gluconate ChEBI	+	respiration
[Ref.: #43787]	D-glucosaminic acid ChEBI	-	respiration
[Ref.: #43787]	D-glucose 6-phosphate ChEBI	+	respiration
[Ref.: #43787]	D-glucuronate ChEBI	-	respiration
[Ref.: #43787]	D-mannitol ChEBI	+	respiration
[Ref.: #43787]	D-mannose ChEBI	+	respiration
[Ref.: #43787]	D-psicose ChEBI	+	respiration
[Ref.: #43787]	D-ribose ChEBI	+	builds acid from
[Ref.: #43787]	D-saccharate ChEBI	-	respiration
[Ref.: #43787]	D-serine ChEBI	-	respiration
[Ref.: #43787]	D-sorbitol ChEBI	-	respiration
[Ref.: #43787]	D-xylose ChEBI	+	builds acid from
[Ref.: #43787]	decanoate ChEBI	-	assimilation
[Ref.: #43787]	dextrin ChEBI	+	respiration
[Ref.: #43787]	DL-carnitine ChEBI	-	respiration
[Ref.: #43787]	erythritol ChEBI	-	builds acid from
[Ref.: #43787]	erythritol ChEBI	-	respiration
[Ref.: #43787]	esculin ChEBI	-	hydrolysis
[Ref.: #43787]	esculin ChEBI	+	builds acid from
[Ref.: #43787]	ethanolamine ChEBI	-	respiration
[Ref.: #43787]	formate ChEBI	+/-	assimilation
[Ref.: #43787]	fructose ChEBI	+	builds acid from
[Ref.: #43787]	galactitol ChEBI	-	builds acid from
[Ref.: #43787]	galactose ChEBI	+	builds acid from
[Ref.: #43787]	gamma-aminobutyric acid ChEBI	-	respiration
[Ref.: #43787]	gelatin ChEBI	-	hydrolysis
[Ref.: #43787]	gentiobiose ChEBI	+	builds acid from
[Ref.: #43787]	gentiobiose ChEBI	+	respiration
[Ref.: #43787]	gluconate ChEBI	-	builds acid from
[Ref.: #43787]	gluconate ChEBI	+	assimilation
[Ref.: #43787]	glucose ChEBI	+	assimilation
[Ref.: #43787]	glucose ChEBI	+	builds acid from
[Ref.: #43787]	glucose ChEBI	+	fermentation
[Ref.: #43787]	glucose 1-phosphate ChEBI	+	respiration
[Ref.: #43787]	glucuronamide ChEBI	-	respiration
[Ref.: #43787]	glycerol ChEBI	+	builds acid from
[Ref.: #43787]	glycerol ChEBI	+	respiration
[Ref.: #43787]	glycerol 1-phosphate ChEBI	+/-	assimilation
[Ref.: #43787]	glycogen ChEBI	-	builds acid from
[Ref.: #43787]	glycogen ChEBI	-	respiration
[Ref.: #43787]	glycyl L-aspartic acid ChEBI	+	respiration
[Ref.: #43787]	glycyl-l-glutamate ChEBI	+	respiration
[Ref.: #43787]	hydroxyproline ChEBI	-	respiration
[Ref.: #43787]	inosine ChEBI	+	respiration
[Ref.: #43787]	inulin ChEBI	-	builds acid from
[Ref.: #43787]	itaconate ChEBI	-	respiration
[Ref.: #43787]	L-alaninamide ChEBI	-	respiration
[Ref.: #43787]	L-alanine ChEBI	+	respiration
[Ref.: #43787]	L-alanylglycine ChEBI	+	respiration
[Ref.: #43787]	L-arabinose ChEBI	+	assimilation
[Ref.: #43787]	L-arabinose ChEBI	+	builds acid from
[Ref.: #43787]	L-arabinose ChEBI	+	respiration
[Ref.: #43787]	L-arabitol ChEBI	-	builds acid from
[Ref.: #43787]	L-asparagine ChEBI	+	respiration
[Ref.: #43787]	L-aspartate ChEBI	+	respiration
[Ref.: #43787]	L-fucose ChEBI	+	builds acid from
[Ref.: #43787]	L-fucose ChEBI	+	respiration
[Ref.: #43787]	L-glutamate ChEBI	+	respiration
[Ref.: #43787]	L-histidine ChEBI	+	respiration
[Ref.: #43787]	L-leucine ChEBI	-	respiration
[Ref.: #43787]	L-ornithine ChEBI	-	respiration
[Ref.: #43787]	L-phenylalanine ChEBI	-	respiration
[Ref.: #43787]	L-proline ChEBI	+	respiration
[Ref.: #43787]	L-pyroglutamic acid ChEBI	-	respiration
[Ref.: #43787]	L-rhamnose ChEBI	+	builds acid from
[Ref.: #43787]	L-rhamnose ChEBI	+	respiration
[Ref.: #43787]	L-serine ChEBI	+	respiration
[Ref.: #43787]	L-threonine ChEBI	-	respiration
[Ref.: #43787]	L-xylose ChEBI	-	builds acid from
[Ref.: #43787]	lactate ChEBI	+	respiration
[Ref.: #43787]	lactose ChEBI	+	builds acid from
[Ref.: #43787]	lactulose ChEBI	-	respiration
[Ref.: #43787]	lyxose ChEBI	+	builds acid from
[Ref.: #43787]	malate ChEBI	+	assimilation
[Ref.: #43787]	malonate ChEBI	-	respiration
[Ref.: #43787]	maltose ChEBI	+	assimilation
[Ref.: #43787]	maltose ChEBI	+	respiration
[Ref.: #43787]	mannitol ChEBI	+	assimilation
[Ref.: #43787]	mannitol ChEBI	+	builds acid from
[Ref.: #43787]	mannose ChEBI	+	assimilation
[Ref.: #43787]	mannose ChEBI	+	builds acid from
[Ref.: #43787]	melezitose ChEBI	+	builds acid from
[Ref.: #43787]	melibiose ChEBI	+	builds acid from
[Ref.: #43787]	melibiose ChEBI	+	respiration
[Ref.: #43787]	methyl alpha-D-glucopyranoside ChEBI	+/-	assimilation
[Ref.: #43787]	methyl alpha-D-mannoside ChEBI	+	builds acid from
[Ref.: #43787]	methyl beta-D-xylopyranoside ChEBI	-	builds acid from
[Ref.: #43787]	methyl D-glucoside ChEBI	+	respiration
[Ref.: #43787]	methyl pyruvate ChEBI	+	respiration
[Ref.: #43787]	monomethyl succinate ChEBI	+/-	assimilation
[Ref.: #43787]	myo-inositol ChEBI	+	builds acid from
[Ref.: #43787]	myo-inositol ChEBI	+	respiration
[Ref.: #43787]	N-acetylgalactosamine ChEBI	-	respiration
[Ref.: #43787]	N-acetylglucosamine ChEBI	+	assimilation
[Ref.: #43787]	N-acetylglucosamine ChEBI	+	builds acid from
[Ref.: #43787]	N-acetylglucosamine ChEBI	+	respiration
[Ref.: #43787]	nitrate ChEBI	-	reduction
[Ref.: #43787]	phenylacetate ChEBI	-	assimilation
[Ref.: #43787]	phenylethylamine ChEBI	-	respiration
[Ref.: #43787]	propionate ChEBI	-	respiration
[Ref.: #43787]	putrescine ChEBI	-	respiration
[Ref.: #43787]	quinate ChEBI	+/-	assimilation
[Ref.: #43787]	raffinose ChEBI	+	builds acid from
[Ref.: #43787]	raffinose ChEBI	+	respiration
[Ref.: #43787]	ribitol ChEBI	-	builds acid from
[Ref.: #43787]	ribitol ChEBI	-	respiration
[Ref.: #43787]	salicin ChEBI	+	builds acid from
[Ref.: #43787]	sebacic acid ChEBI	-	respiration
[Ref.: #43787]	sorbitol ChEBI	-	builds acid from
[Ref.: #43787]	sorbose ChEBI	-	builds acid from
[Ref.: #43787]	starch ChEBI	-	builds acid from
[Ref.: #43787]	succinamate ChEBI	-	respiration
[Ref.: #43787]	succinate ChEBI	+	respiration
[Ref.: #43787]	sucrose ChEBI	+	builds acid from
[Ref.: #43787]	sucrose ChEBI	+	respiration
[Ref.: #43787]	tagatose ChEBI	-	builds acid from
[Ref.: #43787]	thymidine ChEBI	+	respiration
[Ref.: #43787]	trehalose ChEBI	+	builds acid from
[Ref.: #43787]	trehalose ChEBI	+	respiration
[Ref.: #43787]	turanose ChEBI	+	builds acid from
[Ref.: #43787]	turanose ChEBI	+	respiration
[Ref.: #43787]	tween 40 ChEBI	+/-	assimilation
[Ref.: #43787]	tween 80 ChEBI	+	respiration
[Ref.: #43787]	uridine ChEBI	+	respiration
[Ref.: #43787]	urocanic acid ChEBI	+	respiration
[Ref.: #43787]	xylitol ChEBI	+	builds acid from
[Ref.: #43787]	xylitol ChEBI	+	respiration
	Only first 10 entries are displayed. Click here to see all.

	Metabolite	Production
[Ref.: #43787]	acetoin ChEBI	no
[Ref.: #43787]	hydrogen sulfide ChEBI	no
[Ref.: #43787]	indole ChEBI	no

	Enzyme	Enzyme activity	EC number
[Ref.: #43787]	arginine dihydrolase	-	3.5.3.6
[Ref.: #43787]	beta-galactosidase	+	3.2.1.23
[Ref.: #43787]	catalase	+	1.11.1.6
[Ref.: #43787]	cytochrome oxidase	-	1.9.3.1
[Ref.: #43787]	lysine decarboxylase	-	4.1.1.18
[Ref.: #43787]	ornithine decarboxylase	-	4.1.1.17
[Ref.: #43787]	urease	-	3.5.1.5

Fatty acid profile

Metadata FA analysis

Reference

[Ref.: #43787]

Fatty acid	Percentage
C16:0	35.2
C16:1ω7c / C16:1ω6c	27.4
C18:1ω7c / C18:2ω6,9c	14.7
C12:0-aldehyde / unknown	6.6
C14:0	5.4
C17:0cyclo	4.9
C12:0	4
C18:0	0.6
C17:0	0.3

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #43787]	Sample type/isolated from	The stems of potato plants (Solanum tuberosum L.) cropped from soil
[Ref.: #43787]	Geographic location (country and/or sea, region)	Salamanca Province
[Ref.: #43787]	Country	Spain
[Ref.: #43787]	Country ISO 3 Code	ESP
[Ref.: #43787]	Continent	Europe
* marker position based on {}

Isolation sources categories

#Environmental	#Terrestrial	#Soil
#Host	#Plants	#Herbaceous plants (Grass,Crops)
#Host Body-Site	#Plant	#Stem (Branch)

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence LN624761 (>99% sequence identity) for Erwinia from Microbeatlas

Aquatic Samples	1307
Soil Samples	1215
Animal Samples	5686
Plant Samples	2038
Total Samples	10246

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #43787]	16S rRNA gene sequence	LN624761		GenBank

[Ref.: #43787]

GC-content

50.1 mol%

thermal denaturation, midpoint method (Tm)

Availability in culture collections External links

[Ref.: #43787]

Culture collection no.

LMG 28457, CECT 8692

[Ref.: #96812]

SI-ID 396506

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Erwinia endophytica sp. nov., isolated from potato (Solanum tuberosum L.) stems.	Ramirez-Bahena MH, Salazar S, Cuesta MJ, Tejedor C, Igual JM, Fernandez-Pascual M, Peix A	Int J Syst Evol Microbiol	10.1099/ijsem.0.000820	2015	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#43787

Martha-Helena Ramírez-Bahena, Sergio Salazar, Maria José Cuesta, Carmen Tejedor, José-Mariano Igual, Mercedes Fernández-Pascual, Álvaro Peix: Erwinia endophytica sp. nov., isolated from potato (Solanum tuberosum L.) stems. IJSEM 66: 975 - 981 2016 ( DOI 10.1099/ijsem.0.000820 , PubMed 26637820 )

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#96812

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID396506.1 )

* These data were automatically processed and therefore are not curated

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