Strain identifier

BacDive ID: 140918

Type strain: Yes

Species: Erwinia endophytica

Strain Designation: BSTT30

NCBI tax ID(s): 1563158 (species)

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General

@ref: 43787

BacDive-ID: 140918

keywords: 16S sequence, Bacteria, facultative anaerobe, Gram-negative, motile, rod-shaped, colony-forming

description: Erwinia endophytica BSTT30 is a facultative anaerobe, Gram-negative, motile bacterium that forms circular colonies and was isolated from The stems of potato plants cropped from soil.

NCBI tax id

  • NCBI tax id: 1563158
  • Matching level: species

doi: 10.13145/bacdive140918.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Enterobacterales
  • family: Erwiniaceae
  • genus: Erwinia
  • species: Erwinia endophytica
  • full scientific name: Erwinia endophytica Ramírez-Bahena et al. 2016

@ref: 43787

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Enterobacterales

family: Erwiniaceae

genus: Erwinia

species: Erwinia endophytica

strain designation: BSTT30

type strain: yes

Morphology

cell morphology

  • @ref: 43787
  • gram stain: negative
  • cell length: 1.5-1.7 µm
  • cell width: 0.8-0.9 µm
  • cell shape: rod-shaped
  • motility: yes

colony morphology

  • @ref: 43787
  • colony size: 2-2.5 mm
  • colony color: Beige, translucent
  • colony shape: circular
  • incubation period: 2 days
  • medium used: Nutrient agar

Culture and growth conditions

culture medium

  • @ref: 43787
  • name: Nutrient agar (NA)
  • growth: yes

culture temp

  • @ref: 43787
  • growth: positive
  • type: growth
  • temperature: 5-35

culture pH

  • @ref: 43787
  • ability: positive
  • type: growth
  • pH: 4.5-10
  • PH range: alkaliphile

Physiology and metabolism

oxygen tolerance

  • @ref: 43787
  • oxygen tolerance: facultative anaerobe

spore formation

  • @ref: 43787
  • spore formation: no

halophily

  • @ref: 43787
  • salt: NaCl
  • growth: positive
  • tested relation: growth
  • concentration: 0-6 %(w/v)

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
43787168082-dehydro-D-gluconate-assimilation
43787581435-dehydro-D-gluconate-assimilation
4378717128adipate-assimilation
4378727689decanoate-assimilation
4378718401phenylacetate-assimilation
4378715963ribitol-builds acid from
4378718333D-arabitol-builds acid from
4378716813galactitol-builds acid from
4378717113erythritol-builds acid from
4378724265gluconate-builds acid from
4378728087glycogen-builds acid from
4378715443inulin-builds acid from
4378718403L-arabitol-builds acid from
4378765328L-xylose-builds acid from
4378774863methyl beta-D-xylopyranoside-builds acid from
4378730911sorbitol-builds acid from
4378727922sorbose-builds acid from
4378728017starch-builds acid from
4378733954tagatose-builds acid from
437874853esculin-hydrolysis
437875291gelatin-hydrolysis
4378717632nitrate-reduction
43787167632-oxobutanoate-respiration
43787309162-oxoglutarate-respiration
43787286442-oxopentanoate-respiration
43787620642,3-butanediol-respiration
43787181014-hydroxyphenylacetic acid-respiration
4378715963ribitol-respiration
4378740585alpha-cyclodextrin-respiration
43787645522-hydroxybutyrate-respiration
437878295beta-hydroxybutyrate-respiration
4378716383cis-aconitate-respiration
4378715570D-alanine-respiration
4378718333D-arabitol-respiration
4378718024D-galacturonic acid-respiration
4378717784D-glucosaminic acid-respiration
4378715748D-glucuronate-respiration
4378733801D-saccharate-respiration
4378716523D-serine-respiration
4378717924D-sorbitol-respiration
4378717126DL-carnitine-respiration
4378717113erythritol-respiration
4378716000ethanolamine-respiration
4378716865gamma-aminobutyric acid-respiration
43787167244-hydroxybutyrate-respiration
4378732323glucuronamide-respiration
4378728087glycogen-respiration
4378724741hydroxyproline-respiration
4378717240itaconate-respiration
4378721217L-alaninamide-respiration
4378715603L-leucine-respiration
4378715729L-ornithine-respiration
4378717295L-phenylalanine-respiration
4378718183L-pyroglutamic acid-respiration
4378716857L-threonine-respiration
437876359lactulose-respiration
4378715792malonate-respiration
4378728037N-acetylgalactosamine-respiration
4378750048phenylethylamine-respiration
4378717272propionate-respiration
4378717148putrescine-respiration
4378741865sebacic acid-respiration
43787143136succinamate-respiration
4378716947citrate+assimilation
4378725115malate+assimilation
4378724265gluconate+assimilation
4378717234glucose+assimilation
4378730849L-arabinose+assimilation
4378717306maltose+assimilation
4378729864mannitol+assimilation
4378737684mannose+assimilation
43787506227N-acetylglucosamine+assimilation
4378727613amygdalin+builds acid from
4378718305arbutin+builds acid from
4378717057cellobiose+builds acid from
4378717108D-arabinose+builds acid from
4378728847D-fucose+builds acid from
4378716988D-ribose+builds acid from
4378765327D-xylose+builds acid from
437874853esculin+builds acid from
4378728757fructose+builds acid from
4378728260galactose+builds acid from
4378728066gentiobiose+builds acid from
4378717234glucose+builds acid from
4378717754glycerol+builds acid from
4378717268myo-inositol+builds acid from
4378730849L-arabinose+builds acid from
4378718287L-fucose+builds acid from
4378762345L-rhamnose+builds acid from
4378717716lactose+builds acid from
4378725097lyxose+builds acid from
4378729864mannitol+builds acid from
4378737684mannose+builds acid from
437876731melezitose+builds acid from
4378728053melibiose+builds acid from
4378743943methyl alpha-D-mannoside+builds acid from
43787506227N-acetylglucosamine+builds acid from
4378716634raffinose+builds acid from
4378717814salicin+builds acid from
4378717992sucrose+builds acid from
4378727082trehalose+builds acid from
4378732528turanose+builds acid from
4378717151xylitol+builds acid from
4378717234glucose+fermentation
4378717925alpha-D-glucose+respiration
4378736219alpha-lactose+respiration
4378717057cellobiose+respiration
4378716947citrate+respiration
4378715824D-fructose+respiration
4378715895D-galactonic acid lactone+respiration
4378712936D-galactose+respiration
4378718391D-gluconate+respiration
4378714314D-glucose 6-phosphate+respiration
4378716899D-mannitol+respiration
4378716024D-mannose+respiration
4378727605D-psicose+respiration
4378723652dextrin+respiration
4378724996lactate+respiration
4378728066gentiobiose+respiration
4378729042glucose 1-phosphate+respiration
4378717754glycerol+respiration
4378773804glycyl L-aspartic acid+respiration
4378717596inosine+respiration
4378716977L-alanine+respiration
4378773786L-alanylglycine+respiration
4378730849L-arabinose+respiration
4378717196L-asparagine+respiration
4378729991L-aspartate+respiration
4378718287L-fucose+respiration
4378729985L-glutamate+respiration
4378715971L-histidine+respiration
4378717203L-proline+respiration
4378762345L-rhamnose+respiration
4378717115L-serine+respiration
4378717306maltose+respiration
4378728053melibiose+respiration
4378737657methyl D-glucoside+respiration
4378751850methyl pyruvate+respiration
4378717268myo-inositol+respiration
43787506227N-acetylglucosamine+respiration
4378773784glycyl-l-glutamate+respiration
4378716634raffinose+respiration
4378730031succinate+respiration
4378717992sucrose+respiration
4378717748thymidine+respiration
4378727082trehalose+respiration
4378732528turanose+respiration
4378753426tween 80+respiration
4378716704uridine+respiration
4378727248urocanic acid+respiration
4378717151xylitol+respiration
4378730089acetate+/-assimilation
4378773706bromosuccinate+/-assimilation
4378715740formate+/-assimilation
4378714336glycerol 1-phosphate+/-assimilation
43787320061methyl alpha-D-glucopyranoside+/-assimilation
4378775146monomethyl succinate+/-assimilation
4378726490quinate+/-assimilation
4378753423tween 40+/-assimilation

metabolite production

@refChebi-IDmetaboliteproduction
4378715688acetoinno
4378716136hydrogen sulfideno
4378735581indoleno

enzymes

@refvalueactivityec
43787catalase+1.11.1.6
43787cytochrome oxidase-1.9.3.1
43787arginine dihydrolase-3.5.3.6
43787urease-3.5.1.5
43787lysine decarboxylase-4.1.1.18
43787ornithine decarboxylase-4.1.1.17
43787beta-galactosidase+3.2.1.23

fatty acid profile

  • fatty acids

    @reffatty acidpercentage
    43787C12:04
    43787C12:0-aldehyde / unknown6.6
    43787C14:05.4
    43787C16:035.2
    43787C16:1ω7c / C16:1ω6c27.4
    43787C17:00.3
    43787C17:0cyclo4.9
    43787C18:00.6
    43787C18:1ω7c / C18:2ω6,9c14.7
  • type of FA analysis: whole cell analysis
  • incubation medium: TSA plates
  • agar/liquid: agar
  • incubation temperature: 28
  • incubation time: 1
  • incubation_oxygen: aerobic
  • software version: Sherlock 6.1
  • library/peak naming table: RTSBA6
  • system: MIS MIDI
  • cutoff value:

Isolation, sampling and environmental information

isolation

  • @ref: 43787
  • sample type: The stems of potato plants (Solanum tuberosum L.) cropped from soil
  • geographic location: Salamanca Province
  • country: Spain
  • origin.country: ESP
  • continent: Europe

isolation source categories

Cat1Cat2Cat3
#Environmental#Terrestrial#Soil
#Host#Plants#Herbaceous plants (Grass,Crops)
#Host Body-Site#Plant#Stem (Branch)

taxonmaps

  • @ref: 69479
  • File name: preview.99_7280.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_6;96_7;97_502;98_2247;99_7280&stattab=map
  • Last taxonomy: Erwinia
  • 16S sequence: LN624761
  • Sequence Identity:
  • Total samples: 10246
  • soil counts: 1215
  • aquatic counts: 1307
  • animal counts: 5686
  • plant counts: 2038

Sequence information

16S sequences

  • @ref: 43787
  • description: 16S rRNA gene sequence
  • accession: LN624761
  • database: nuccore

GC content

  • @ref: 43787
  • GC-content: 50.1
  • method: thermal denaturation, midpoint method (Tm)

External links

@ref: 43787

culture collection no.: LMG 28457, CECT 8692

straininfo link

  • @ref: 96812
  • straininfo: 396506

literature

  • topic: Phylogeny
  • Pubmed-ID: 26637820
  • title: Erwinia endophytica sp. nov., isolated from potato (Solanum tuberosum L.) stems.
  • authors: Ramirez-Bahena MH, Salazar S, Cuesta MJ, Tejedor C, Igual JM, Fernandez-Pascual M, Peix A
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijsem.0.000820
  • year: 2015

Reference

@idauthorstitledoi/urljournalpubmed
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
43787Martha-Helena Ramírez-Bahena, Sergio Salazar, Maria José Cuesta, Carmen Tejedor, José-Mariano Igual, Mercedes Fernández-Pascual, Álvaro PeixErwinia endophytica sp. nov., isolated from potato (Solanum tuberosum L.) stems10.1099/ijsem.0.000820IJSEM 66: 975-981 201626637820
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/
96812Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID396506.1