Name: Dissulfurimicrobium hydrothermale Sh68
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 140917

Type strain:

Species: Dissulfurimicrobium hydrothermale

Strain Designation: Sh68

Culture col. no.: JCM 19990, VKM B-2854

Strain history: A. I. Slobodkin; Winogradsky Inst. of Microbiol., RAS, Russia; Sh68.

NCBI tax ID(s): 1750598 (species)

Special Collections

Section

Dissulfurimicrobium hydrothermale Sh68 is an anaerobe, chemoautolithotroph, Gram-negative bacterium that was isolated from A terrestrial hydrothermal pond 'Kuchonnyi' at Uzon Caldera.

Gram-negative
motile
rod-shaped
anaerobe
chemoautolithotroph
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Deltaproteobacteria*
	Order	[Deltaproteobacteria, not assigned to order]
	Family	[Deltaproteobacteria, not assigned to family]
	Genus	*Dissulfurimicrobium*
	Species	**Dissulfurimicrobium hydrothermale**
	Full Scientific Name (LPSN)	Dissulfurimicrobium hydrothermale Slobodkin et al. 2016

Information on morphological and physiological properties Morphology

[Ref.: #43784]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %97.469

[Ref.: #43784]	Cell length	1.2-2 µm

[Ref.: #43784]	Cell width	0.5-0.8 µm

[Ref.: #43784]	Cell shape	rod-shaped

[Ref.: #43784]	Motility	yes

Information on culture and growth conditions Culture and growth conditions

		Temperature
[Ref.: #43784]	growth	30-65 °C
[Ref.: #43784]	optimum	50-52 °C
[Ref.: #67770]	growth	50 °C

	pH	Kind of pH		pH
[Ref.: #43784]			optimum	6-6.2
[Ref.: #43784]			growth	5.2-7.5

Information on physiology and metabolism Physiology and metabolism

[Ref.: #43784]

Oxygen tolerance

anaerobe

[Ref.: #43784]

Nutrition type

chemoautolithotroph

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #43784]		NaCl		growth	0-2.3	%(w/v)

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #43784]	anthraquinone-2,6-disulfonic acid ChEBI	-	reduction
[Ref.: #43784]	arabinose ChEBI	-	fermentation
[Ref.: #43784]	carbon dioxide ChEBI	+	carbon source
[Ref.: #43784]	dioxygen ChEBI	-	reduction
[Ref.: #43784]	elemental sulfur ChEBI	+	energy source
[Ref.: #43784]	ferric citrate ChEBI	-	reduction
[Ref.: #43784]	ferrihydrite	-	reduction
[Ref.: #43784]	fructose ChEBI	-	fermentation
[Ref.: #43784]	fumarate ChEBI	-	reduction
[Ref.: #43784]	glucose ChEBI	-	fermentation
[Ref.: #43784]	maltose ChEBI	-	fermentation
[Ref.: #43784]	nitrate ChEBI	-	reduction
[Ref.: #43784]	peptone	-	fermentation
[Ref.: #43784]	pyruvate ChEBI	-	fermentation
[Ref.: #43784]	succinate ChEBI	+	growth
[Ref.: #43784]	sucrose ChEBI	-	fermentation
[Ref.: #43784]	sulfate ChEBI	-	reduction
	Only first 10 entries are displayed. Click here to see all.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #43784]	Sample type/isolated from	A terrestrial hydrothermal pond 'Kuchonnyi' at Uzon Caldera
[Ref.: #43784]	Geographic location (country and/or sea, region)	Kronotsky Nature Reserve, Kamchatka
[Ref.: #43784]	Country	Russia
[Ref.: #43784]	Country ISO 3 Code	RUS
[Ref.: #43784]	Continent	Asia
[Ref.: #43784]	Isolation date	2009-09

[Ref.: #67770]	Sample type/isolated from	Hydrothermal pond at Uzon Caldera
[Ref.: #67770]	Geographic location (country and/or sea, region)	Kamchatka
[Ref.: #67770]	Country	Russia
[Ref.: #67770]	Country ISO 3 Code	RUS
* marker position based on {}

Isolation sources categories

#Condition	#Thermophilic (>45°C)	-
#Environmental	#Aquatic	#Pond (small)
#Environmental	#Terrestrial	-

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence KT159733 (>99% sequence identity) for Dissulfurimicrobium hydrothermale subclade from Microbeatlas

Aquatic Samples	52
Soil Samples	12
Animal Samples	2
Plant Samples	2
Total Samples	68

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #43784]	Dissulfurimicrobium hydrothermale strain Sh68 16S ribosomal RNA gene, partial sequence	KT159733		GenBank ENA

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Dissulfurimicrobium hydrothermale Sh68	GCA_022026155	complete	GenBank ENA	1750598 tax ID	*

[Ref.: #43784]

GC-content

49 mol%

thermal denaturation, midpoint method (Tm)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Dissulfurimicrobium hydrothermale Sh68 NCBI: GCA_022026155.1
[Ref.: #69480]	gram-positive	gram-positiveⓘ	no	97.469	yes
[Ref.: #69480]	anaerobic	anaerobicⓘ	yes	85.527	no
[Ref.: #69480]	aerobic	aerobicⓘ	no	86.901	yes
[Ref.: #69480]	spore-forming	spore-formingⓘ	no	86.671	no
[Ref.: #69480]	thermophilic	thermophileⓘ	yes	69.18	yes
[Ref.: #69480]	flagellated	motile2+ⓘ	yes	66.222	no

Availability in culture collections External links

[Ref.: #43784]

Culture collection no.

JCM 19990, VKM B-2854

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Dissulfurimicrobium hydrothermale gen. nov., sp. nov., a thermophilic, autotrophic, sulfur-disproportionating deltaproteobacterium isolated from a hydrothermal pond.	Slobodkin AI, Slobodkina GB, Panteleeva AN, Chernyh NA, Novikov AA, Bonch-Osmolovskaya EA	Int J Syst Evol Microbiol	10.1099/ijsem.0.000828	2015	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#43784

A. I. Slobodkin, G. B. Slobodkina, A. N. Panteleeva, N. A. Chernyh, A. A. Novikov, E. A. Bonch-Osmolovskaya: Dissulfurimicrobium hydrothermale gen. nov., sp. nov., a thermophilic, autotrophic, sulfur-disproportionating deltaproteobacterium isolated from a hydrothermal pond. IJSEM 66: 1022 - 1026 2016 ( DOI 10.1099/ijsem.0.000828 , PubMed 26646853 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

* These data were automatically processed and therefore are not curated

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