Dissulfurimicrobium hydrothermale (JCM 19990, VKM B-2854, Sh68)

Name: Dissulfurimicrobium hydrothermale (JCM 19990, VKM B-2854, Sh68)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 140917

Type strain

Strain Designation Sh68

Culture col. no. JCM 19990 VKM B-2854 Sh68

NCBI tax ID(s) 1750598

Special Collections JCM Literature strains

History A. I. Slobodkin; Winogradsky Inst. of Microbiol., RAS, Russia; Sh68.

Links

Dissulfurimicrobium hydrothermale Sh68 is an anaerobe, chemoautolithotroph, Gram-negative bacterium that was isolated from A terrestrial hydrothermal pond 'Kuchonnyi' at Uzon Caldera.

Gram-negative motile rod-shaped anaerobe chemoautolithotroph genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 393355

JCM 19990

@ref 20215

Last LPSN update 2026-02-09 11:33:45

Domain Bacteria

Phylum Pseudomonadota

Class Deltaproteobacteria

Order [Deltaproteobacteria, not assigned to order]

Family [Deltaproteobacteria, not assigned to family]

Genus Dissulfurimicrobium

Species Dissulfurimicrobium hydrothermale

Full scientific name Dissulfurimicrobium hydrothermale Slobodkin et al. 2016

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape	Motility	Confidence
43784	negative	1.2-2 µm	0.5-0.8 µm	rod-shaped
125438	negative					97.469

Culture and growth conditions

Culture temp

@ref	Growth	Type	Temperature (°C)
43784	positive	growth	30-65
43784	positive	optimum	50-52
67770	positive	growth	50

Culture pH

@ref	Ability	Type	PH
43784	positive	optimum	6-6.2
43784	positive	growth	5.2-7.5

Physiology and metabolism

Oxygen tolerance

43784

Oxygen toleranceanaerobe

Nutrition type

43784

Typechemoautolithotroph

Halophily

@ref	Salt	Growth	Tested relation	Concentration
43784	NaCl	positive	growth	0-2.3 %(w/v)

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
43784	85115 ChEBI	anthraquinone-2,6-disulfonic acid	-	reduction
43784	22599 ChEBI	arabinose	-	fermentation
43784	16526 ChEBI	carbon dioxide	+	carbon source
43784	15379 ChEBI	dioxygen	-	reduction
43784	33403 ChEBI	elemental sulfur	+	energy source
43784	31605 ChEBI	ferric citrate	-	reduction
43784		ferrihydrite	-	reduction
43784	28757 ChEBI	fructose	-	fermentation
43784	29806 ChEBI	fumarate	-	reduction
43784	17234 ChEBI	glucose	-	fermentation
43784	17306 ChEBI	maltose	-	fermentation
43784	17632 ChEBI	nitrate	-	reduction
43784		peptone	-	fermentation
43784	15361 ChEBI	pyruvate	-	fermentation
43784	30031 ChEBI	succinate	+	growth
43784	17992 ChEBI	sucrose	-	fermentation
43784	16189 ChEBI	sulfate	-	reduction

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Condition	#Thermophilic (>45°C)	-
#Environmental	#Aquatic	#Pond (small)
#Environmental	#Terrestrial	-

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent	Isolation date
43784	A terrestrial hydrothermal pond 'Kuchonnyi' at Uzon Caldera	Kronotsky Nature Reserve, Kamchatka	Russia	RUS	Asia	2009-09
67770	Hydrothermal pond at Uzon Caldera	Kamchatka	Russia	RUS

Taxonmaps

69479

Global distribution of 16S sequence KT159733 (>99% sequence identity) for Dissulfurimicrobium hydrothermale subclade from Microbeatlas

Aquatic Samples	52
Soil Samples	12
Animal Samples	2
Plant Samples	2
Total Samples	68

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM2202615v1 assembly for Dissulfurimicrobium hydrothermale Sh68	complete	GCA_022026155	1750598.3	8046654717	1750598	98.2

16S sequences

@ref	Description	Accession	Database
43784	Dissulfurimicrobium hydrothermale strain Sh68 16S ribosomal RNA gene, partial sequence	KT159733

GC content

@ref	GC-content (mol%)	Method
43784	49	thermal denaturation, midpoint method (Tm)

Genome-based predictions

Predictions

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Dissulfurimicrobium hydrothermale Sh68
NCBI: GCA_022026155.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	97.47	yes
125438	anaerobic	anaerobicⓘ	yes	85.53	no
125438	aerobic	aerobicⓘ	no	86.90	yes
125438	spore-forming	spore-formingⓘ	no	86.67	no
125438	thermophilic	thermophileⓘ	yes	69.18	yes
125438	flagellated	motile2+ⓘ	yes	66.22	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Complex bacterial diversity of Guaymas Basin hydrothermal sediments revealed by synthetic long-read sequencing (LoopSeq).	Hinkle JE, Chanton JP, Moynihan MA, Ruff SE, Teske A.	Front Microbiol	10.3389/fmicb.2024.1491488	2024
Genetics	Genetic Potential of Dissulfurimicrobium hydrothermale, an Obligate Sulfur-Disproportionating Thermophilic Microorganism.	Yvenou S, Allioux M, Slobodkin A, Slobodkina G, Jebbar M, Alain K.	Microorganisms	10.3390/microorganisms10010060	2021
	Physiological and comparative proteomic characterization of Desulfolithobacter dissulfuricans gen. nov., sp. nov., a novel mesophilic, sulfur-disproportionating chemolithoautotroph from a deep-sea hydrothermal vent.	Hashimoto Y, Shimamura S, Tame A, Sawayama S, Miyazaki J, Takai K, Nakagawa S.	Front Microbiol	10.3389/fmicb.2022.1042116	2022
Phylogeny	Dissulfurirhabdus thermomarina gen. nov., sp. nov., a thermophilic, autotrophic, sulfite-reducing and disproportionating deltaproteobacterium isolated from a shallow-sea hydrothermal vent.	Slobodkina GB, Kolganova TV, Kopitsyn DS, Viryasov MB, Bonch-Osmolovskaya EA, Slobodkin AI.	Int J Syst Evol Microbiol	10.1099/ijsem.0.001083	2016
Phylogeny	Dissulfurimicrobium hydrothermale gen. nov., sp. nov., a thermophilic, autotrophic, sulfur-disproportionating deltaproteobacterium isolated from a hydrothermal pond.	Slobodkin AI, Slobodkina GB, Panteleeva AN, Chernyh NA, Novikov AA, Bonch-Osmolovskaya EA	Int J Syst Evol Microbiol	10.1099/ijsem.0.000828	2015

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#43784	A. I. Slobodkin, G. B. Slobodkina, A. N. Panteleeva, N. A. Chernyh, A. A. Novikov, E. A. Bonch-Osmolovskaya: Dissulfurimicrobium hydrothermale gen. nov., sp. nov., a thermophilic, autotrophic, sulfur-disproportionating deltaproteobacterium isolated from a hydrothermal pond. IJSEM 66: 1022 - 1026 2016 ( DOI 10.1099/ijsem.0.000828 , PubMed 26646853 )
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Dissulfurimicrobium hydrothermale (JCM 19990, VKM B-2854, Sh68)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Nutrition type

Halophily

Metabolite utilization

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Sequence information

Genome sequences

Genome browser: GCA_022026155

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

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