Name: Brenneria populi subsp. brevivirga D8-10-2-5
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 140740

Type strain:

Species: Brenneria populi subsp. brevivirga

Strain Designation: D8-10-2-5

Culture col. no.: CFCC 11935, KCTC 42841

NCBI tax ID(s): 2036006 (subspecies)

Section

Brenneria populi subsp. brevivirga D8-10-2-5 is a facultative anaerobe, Gram-negative, motile bacterium that forms circular colonies and was isolated from symptomatic bark of Populus x euramericana canker.

colony-forming
Gram-negative
motile
rod-shaped
facultative anaerobe
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Enterobacterales*
	Family	*Pectobacteriaceae*
	Genus	*Brenneria*
	Species	**Brenneria populi subsp. brevivirga**
	Full Scientific Name (LPSN)	Brenneria populi subsp. brevivirga Zheng et al. 2017

Information on morphological and physiological properties Morphology

[Ref.: #43518]	Gram stain	negative

[Ref.: #43518]	Cell length	1.3-1.5 µm

[Ref.: #43518]	Cell width	0.6 µm

[Ref.: #43518]	Cell shape	rod-shaped

[Ref.: #43518]	Motility	yes

[Ref.: #43518]	Colony size	1-1.2 mm
[Ref.: #43518]	Colony color	milk white
[Ref.: #43518]	Colony shape	circular
[Ref.: #43518]	Incubation period	2 days
[Ref.: #43518]	Cultivation medium used	TSA agar

Information on culture and growth conditions Culture and growth conditions

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Culture medium

Trypticase Soy Agar (TSA)

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Culture medium growth

	Temperatures	Kind of temperature		Temperature
[Ref.: #43518]			growth	4-41 °C
[Ref.: #43518]			optimum	30 °C

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Temperature range

mesophilic

	pH	Kind of pH		pH
[Ref.: #43518]			optimum	6.5
[Ref.: #43518]			growth	4-10

Information on physiology and metabolism Physiology and metabolism

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Oxygen tolerance

facultative anaerobe

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #43518]		NaCl		growth	1-10	%(w/v)

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #43518]	2,3-butanediol ChEBI	+	respiration
[Ref.: #43518]	2-hydroxybutyrate ChEBI	+	respiration
[Ref.: #43518]	2-oxobutanoate ChEBI	+	respiration
[Ref.: #43518]	2-oxoglutarate ChEBI	+	respiration
[Ref.: #43518]	acetate ChEBI	+	respiration
[Ref.: #43518]	alpha-D-glucose ChEBI	+	respiration
[Ref.: #43518]	arbutin ChEBI	+	builds acid from
[Ref.: #43518]	bromosuccinate ChEBI	+	respiration
[Ref.: #43518]	cellobiose ChEBI	+	respiration
[Ref.: #43518]	citrate ChEBI	-	assimilation
[Ref.: #43518]	D-fructose ChEBI	+	builds acid from
[Ref.: #43518]	D-fructose ChEBI	+	respiration
[Ref.: #43518]	D-galactonic acid lactone ChEBI	+	respiration
[Ref.: #43518]	D-galactose ChEBI	+	builds acid from
[Ref.: #43518]	D-galactose ChEBI	+	respiration
[Ref.: #43518]	D-gluconate ChEBI	+	respiration
[Ref.: #43518]	D-glucose ChEBI	+	builds acid from
[Ref.: #43518]	D-mannitol ChEBI	+	builds acid from
[Ref.: #43518]	D-mannitol ChEBI	+	respiration
[Ref.: #43518]	D-mannose ChEBI	+	respiration
[Ref.: #43518]	D-psicose ChEBI	+	respiration
[Ref.: #43518]	D-ribose ChEBI	+	builds acid from
[Ref.: #43518]	D-sorbitol ChEBI	+	builds acid from
[Ref.: #43518]	D-sorbitol ChEBI	+	respiration
[Ref.: #43518]	dextrin ChEBI	+	respiration
[Ref.: #43518]	esculin ChEBI	+	builds acid from
[Ref.: #43518]	formate ChEBI	+	respiration
[Ref.: #43518]	gentiobiose ChEBI	+	respiration
[Ref.: #43518]	glycerol ChEBI	+	builds acid from
[Ref.: #43518]	glycerol ChEBI	+	respiration
[Ref.: #43518]	inosine ChEBI	+	respiration
[Ref.: #43518]	L-arabinose ChEBI	+	builds acid from
[Ref.: #43518]	L-arabinose ChEBI	+	respiration
[Ref.: #43518]	L-asparagine ChEBI	+	respiration
[Ref.: #43518]	L-aspartate ChEBI	+	respiration
[Ref.: #43518]	L-glutamate ChEBI	+	respiration
[Ref.: #43518]	L-rhamnose ChEBI	+	respiration
[Ref.: #43518]	lactate ChEBI	+	respiration
[Ref.: #43518]	maltose ChEBI	+	builds acid from
[Ref.: #43518]	maltose ChEBI	+	respiration
[Ref.: #43518]	melibiose ChEBI	+	builds acid from
[Ref.: #43518]	melibiose ChEBI	+	respiration
[Ref.: #43518]	methyl alpha-D-glucopyranoside ChEBI	+	builds acid from
[Ref.: #43518]	methyl D-glucoside ChEBI	+	respiration
[Ref.: #43518]	methyl pyruvate ChEBI	+	respiration
[Ref.: #43518]	monomethyl succinate ChEBI	+	respiration
[Ref.: #43518]	N-acetylglucosamine ChEBI	+	builds acid from
[Ref.: #43518]	N-acetylglucosamine ChEBI	+	respiration
[Ref.: #43518]	nitrate ChEBI	-	reduction
[Ref.: #43518]	potassium 5-dehydro-D-gluconate	+	builds acid from
[Ref.: #43518]	potassium gluconate ChEBI	+	builds acid from
[Ref.: #43518]	raffinose ChEBI	+	builds acid from
[Ref.: #43518]	raffinose ChEBI	+	respiration
[Ref.: #43518]	rhamnose ChEBI	+	builds acid from
[Ref.: #43518]	salicin ChEBI	+	builds acid from
[Ref.: #43518]	succinamate ChEBI	+	respiration
[Ref.: #43518]	succinate ChEBI	+	respiration
[Ref.: #43518]	sucrose ChEBI	+	builds acid from
[Ref.: #43518]	sucrose ChEBI	+	respiration
[Ref.: #43518]	thymidine ChEBI	+	respiration
[Ref.: #43518]	trehalose ChEBI	+	respiration
[Ref.: #43518]	turanose ChEBI	+	builds acid from
[Ref.: #43518]	turanose ChEBI	+	respiration
[Ref.: #43518]	uridine ChEBI	+	respiration
[Ref.: #43518]	xylitol ChEBI	+	respiration
	Only first 10 entries are displayed. Click here to see all.

	Metabolite	Production
[Ref.: #43518]	acetoin ChEBI	yes
[Ref.: #43518]	hydrogen sulfide ChEBI	no
[Ref.: #43518]	indole ChEBI	no

	Enzyme	Enzyme activity	EC number
[Ref.: #43518]	arginine dihydrolase	-	3.5.3.6
[Ref.: #43518]	beta-galactosidase	-	3.2.1.23
[Ref.: #43518]	catalase	+	1.11.1.6
[Ref.: #43518]	cytochrome oxidase	-	1.9.3.1
[Ref.: #43518]	gelatinase	-
[Ref.: #43518]	lysine decarboxylase	-	4.1.1.18
[Ref.: #43518]	ornithine decarboxylase	-	4.1.1.17
[Ref.: #43518]	tryptophan deaminase	-	4.1.99.1
[Ref.: #43518]	urease	-	3.5.1.5

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #43518]	Sample type/isolated from	symptomatic bark of Populus x euramericana canker
[Ref.: #43518]	Geographic location (country and/or sea, region)	Puyang City, Henan Province
[Ref.: #43518]	Country	China
[Ref.: #43518]	Country ISO 3 Code	CHN
[Ref.: #43518]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Host	#Plants	#Tree
#Host Body-Site	#Plant	#Bark

What are isolation sources categories?

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

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GC-content

56.1 mol%

thermal denaturation, midpoint method (Tm)

Availability in culture collections External links

[Ref.: #43518]

Culture collection no.

CFCC 11935, KCTC 42841

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Brenneria populi subsp. brevivirga subsp. nov. isolated from symptomatic bark of Populus x euramericana canker, and description of Brenneria populi subsp. populi subsp. nov.	Zheng MH, Piao CG, Xue H, Guo MW, Li Y	Int J Syst Evol Microbiol	10.1099/ijsem.0.002183	2017	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#43518

Ming-hui Zheng, Chun-gen Piao, Han Xue, Min-wei Guo, Yong Li: Brenneria populi subsp. Brevivirga subsp. nov. isolated from symptomatic bark of Populus euramericana canker, and description of Brenneria populi subsp. Populi subsp. nov.. IJSEM 67: 3633 - 3638 2017 ( DOI 10.1099/ijsem.0.002183 , PubMed 28875909 )

* These data were automatically processed and therefore are not curated

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