Name: Xanthomonas floridensis ATCC TSD-60
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 140741

Type strain:

Species: Xanthomonas floridensis

Culture col. no.: ATCC TSD-60, ICMP 21312, LMG 29665, NCPPB 4601, WHRI 8848

NCBI tax ID(s): 1843580 (species)

Section

Xanthomonas floridensis ATCC TSD-60 is a Gram-negative, motile, rod-shaped bacterium that forms circular colonies and was isolated from leaves of watercress.

colony-forming
Gram-negative
motile
rod-shaped
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Lysobacterales*
	Family	*Lysobacteraceae*
	Genus	*Xanthomonas*
	Species	**Xanthomonas floridensis**
	Full Scientific Name (LPSN)	Xanthomonas floridensis Vicente et al. 2017

Information on morphological and physiological properties Morphology

[Ref.: #43519]	Gram stain	negative

[Ref.: #43519]	Cell shape	rod-shaped

[Ref.: #43519]	Motility	yes

[Ref.: #43519]	Flagellum arrangement	polar

[Ref.: #43519]	Colony size	2 mm
[Ref.: #43519]	Colony color	yellow
[Ref.: #43519]	Colony shape	circular
[Ref.: #43519]	Incubation period	2 days
[Ref.: #43519]	Cultivation medium used	Yeast dextrose calcium carbonate agar

Information on culture and growth conditions Culture and growth conditions

[Ref.: #43519]

Culture medium

Yeast dextrose calcium carbonate agar

[Ref.: #43519]

Culture medium growth

Information on physiology and metabolism Physiology and metabolism

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #43519]	alpha-D-glucose ChEBI	+	respiration
[Ref.: #43519]	D-fructose ChEBI	+	respiration
[Ref.: #43519]	D-mannitol ChEBI	+	respiration
[Ref.: #43519]	D-mannose ChEBI	+	respiration
[Ref.: #43519]	D-saccharate ChEBI	+	respiration
[Ref.: #43519]	D-serine ChEBI	-	respiration
[Ref.: #43519]	gamma-aminobutyric acid ChEBI	-	respiration
[Ref.: #43519]	gelatin ChEBI	+	respiration
[Ref.: #43519]	gentiobiose ChEBI	+	respiration
[Ref.: #43519]	L-rhamnose ChEBI	-	respiration
[Ref.: #43519]	maltose ChEBI	+	respiration
[Ref.: #43519]	propionate ChEBI	+	respiration
[Ref.: #43519]	raffinose ChEBI	-	respiration
	Only first 10 entries are displayed. Click here to see all.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #43519]	Sample type/isolated from	leaves of watercress
[Ref.: #43519]	Geographic location (country and/or sea, region)	Florida
[Ref.: #43519]	Country	USA
[Ref.: #43519]	Country ISO 3 Code	USA
[Ref.: #43519]	Continent	North America
[Ref.: #43519]	Isolation date	2014
* marker position based on {}

Isolation sources categories

#Host	#Plants	#Aquatic plant
#Host Body-Site	#Plant	#Leaf (Phyllosphere)

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence KX518636 (>99% sequence identity) for Xanthomonas from Microbeatlas

Aquatic Samples	6826
Soil Samples	10026
Animal Samples	28252
Plant Samples	7048
Total Samples	52152

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #43519]	16S rRNA gene sequence	KX518636		GenBank

[Ref.: #43519]

GC-content

65.14 mol%

Availability in culture collections External links

[Ref.: #43519]

Culture collection no.

ATCC TSD-60, ICMP 21312, LMG 29665, NCPPB 4601, WHRI 8848

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Pathogenic, phenotypic and molecular characterisation of Xanthomonas nasturtii sp. nov. and Xanthomonas floridensis sp. nov., new species of Xanthomonas associated with watercress production in Florida.	Vicente JG, Rothwell S, Holub EB, Studholme DJ	Int J Syst Evol Microbiol	10.1099/ijsem.0.002189	2017	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#43519

Joana G. Vicente, Steve Rothwell, Eric B. Holub, David J. Studholme: Pathogenic, phenotypic and molecular characterisation of Xanthomonas nasturtii sp. nov. and Xanthomonas floridensis sp. nov., new species of Xanthomonas associated with watercress production in Florida. IJSEM 67: 3645 - 3654 2017 ( DOI 10.1099/ijsem.0.002189 , PubMed 28840805 )

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

* These data were automatically processed and therefore are not curated

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