Xanthomonas floridensis (ATCC TSD-60, ICMP 21312, LMG 29665)

Name: Xanthomonas floridensis (ATCC TSD-60, ICMP 21312, LMG 29665)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 140741

Type strain

Culture col. no. ATCC TSD-60 ICMP 21312 LMG 29665 NCPPB 4601 WHRI 8848

NCBI tax ID(s) 1843580

Special Collections Literature strains

Links

Xanthomonas floridensis ATCC TSD-60 is a Gram-negative, motile, rod-shaped bacterium that forms circular colonies and was isolated from leaves of watercress.

Gram-negative motile rod-shaped colony-forming genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 415373

ICMP 21312,LMG 29665,NCPPB 4601,ATCC TSD-60,CFBP 8601

@ref 20215

Last LPSN update 2026-02-09 11:33:42

Domain Bacteria

Phylum Pseudomonadota

Class Gammaproteobacteria

Order Lysobacterales

Family Lysobacteraceae

Genus Xanthomonas

Species Xanthomonas floridensis

Full scientific name Xanthomonas floridensis Vicente et al. 2017

Morphology

Cell morphology

@ref	Gram stain	Cell shape	Motility	Flagellum arrangement
43519	negative	rod-shaped		polar

Colony morphology

@ref	Colony size	Colony color	Colony shape	Incubation period	Medium used
43519	2 mm	yellow	circular	2 days	Yeast dextrose calcium carbonate agar

Culture and growth conditions

Culture medium

@ref	Name	Growth
43519	Yeast dextrose calcium carbonate agar

Physiology and metabolism

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
43519	17925 ChEBI	alpha-D-glucose	+	respiration
43519	15824 ChEBI	D-fructose	+	respiration
43519	16899 ChEBI	D-mannitol	+	respiration
43519	16024 ChEBI	D-mannose	+	respiration
43519	33801 ChEBI	D-saccharate	+	respiration
43519	16523 ChEBI	D-serine	-	respiration
43519	16865 ChEBI	gamma-aminobutyric acid	-	respiration
43519	5291 ChEBI	gelatin	+	respiration
43519	28066 ChEBI	gentiobiose	+	respiration
43519	62345 ChEBI	L-rhamnose	-	respiration
43519	17306 ChEBI	maltose	+	respiration
43519	17272 ChEBI	propionate	+	respiration
43519	16634 ChEBI	raffinose	-	respiration

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host	#Plants	#Aquatic plant
#Host Body-Site	#Plant	#Leaf (Phyllosphere)

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent	Isolation date
43519	leaves of watercress	Florida	USA	USA	North America	2014

Taxonmaps

69479

Global distribution of 16S sequence KX518636 (>99% sequence identity) for Xanthomonas from Microbeatlas

Aquatic Samples	6826
Soil Samples	10026
Animal Samples	28252
Plant Samples	7048
Total Samples	52152

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
124043	Xfloridensis_v1.0 assembly for Xanthomonas floridensis WHRI 8848	contig	GCA_001642575	1843580.5	2744054903	1843580	67.84
124043	ASM3492933v1 assembly for Xanthomonas floridensis WHRI 8848	contig	GCA_034929335	1843580.6		1843580	65.21

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
43519	Xanthomonas floridensis 16S ribosomal RNA gene, partial sequence	KX518636
124043	Xanthomonas floridensis strain ICMP 21312 16S ribosomal RNA gene, partial sequence.	MT760339	1379		1843580

GC content

43519

GC-content (mol%)65.14

Genome-based predictions

Literature

Topic	Title	Authors	Journal	DOI	Year
	Characterization and Analysis of the Skin Microbiota in Acne: Impact of Systemic Antibiotics.	Park SY, Kim HS, Lee SH, Kim S.	J Clin Med	10.3390/jcm9010168	2020
	Phylogenetic Distribution and Evolution of Type VI Secretion System in the Genus Xanthomonas.	Liyanapathiranage P, Wagner N, Avram O, Pupko T, Potnis N.	Front Microbiol	10.3389/fmicb.2022.840308	2022
Phylogeny	Genetic and Functional Diversity Help Explain Pathogenic, Weakly Pathogenic, and Commensal Lifestyles in the Genus Xanthomonas.	Pena MM, Bhandari R, Bowers RM, Weis K, Newberry E, Wagner N, Pupko T, Jones JB, Woyke T, Vinatzer BA, Jacques MA, Potnis N.	Genome Biol Evol	10.1093/gbe/evae074	2024
Pathogenicity	Variation in Occurrence and Aflatoxigenicity of Aspergillus flavus from Two Climatically Varied Regions in Kenya.	Monda E, Masanga J, Alakonya A.	Toxins (Basel)	10.3390/toxins12010034	2020
	Stenotrophomonas maltophilia Encodes a VirB/VirD4 Type IV Secretion System That Modulates Apoptosis in Human Cells and Promotes Competition against Heterologous Bacteria, Including Pseudomonas aeruginosa.	Nas MY, White RC, DuMont AL, Lopez AE, Cianciotto NP.	Infect Immun	10.1128/iai.00457-19	2019
Phylogeny	Pathogenic, phenotypic and molecular characterisation of Xanthomonas nasturtii sp. nov. and Xanthomonas floridensis sp. nov., new species of Xanthomonas associated with watercress production in Florida.	Vicente JG, Rothwell S, Holub EB, Studholme DJ	Int J Syst Evol Microbiol	10.1099/ijsem.0.002189	2017

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#43519	Joana G. Vicente, Steve Rothwell, Eric B. Holub, David J. Studholme: Pathogenic, phenotypic and molecular characterisation of Xanthomonas nasturtii sp. nov. and Xanthomonas floridensis sp. nov., new species of Xanthomonas associated with watercress production in Florida. IJSEM 67: 3645 - 3654 2017 ( DOI 10.1099/ijsem.0.002189 , PubMed 28840805 )
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Xanthomonas floridensis (ATCC TSD-60, ICMP 21312, LMG 29665)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Culture and growth conditions

Culture medium

Physiology and metabolism

Metabolite utilization

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Sequence information

Genome sequences

Genome browser: GCA_001642575

16S sequences

GC content

Genome-based predictions

Literature

Literature

References

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