Strain identifier

BacDive ID: 140740

Type strain: Yes

Species: Brenneria populi subsp. brevivirga

Strain Designation: D8-10-2-5

NCBI tax ID(s): 2036006 (subspecies)

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General

@ref: 43518

BacDive-ID: 140740

keywords: Bacteria, facultative anaerobe, Gram-negative, motile, rod-shaped, colony-forming

description: Brenneria populi subsp. brevivirga D8-10-2-5 is a facultative anaerobe, Gram-negative, motile bacterium that forms circular colonies and was isolated from symptomatic bark of Populus x euramericana canker.

NCBI tax id

  • NCBI tax id: 2036006
  • Matching level: subspecies

doi: 10.13145/bacdive140740.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Enterobacterales
  • family: Pectobacteriaceae
  • genus: Brenneria
  • species: Brenneria populi subsp. brevivirga
  • full scientific name: Brenneria populi subsp. brevivirga Zheng et al. 2017

@ref: 43518

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Enterobacterales

family: Pectobacteriaceae

genus: Brenneria

species: Brenneria populi subsp. Brevivirga

strain designation: D8-10-2-5

type strain: yes

Morphology

cell morphology

  • @ref: 43518
  • gram stain: negative
  • cell length: 1.3-1.5 µm
  • cell width: 0.6 µm
  • cell shape: rod-shaped
  • motility: yes

colony morphology

  • @ref: 43518
  • colony size: 1-1.2 mm
  • colony color: milk white
  • colony shape: circular
  • incubation period: 2 days
  • medium used: TSA agar

Culture and growth conditions

culture medium

  • @ref: 43518
  • name: Trypticase Soy Agar (TSA)
  • growth: yes

culture temp

@refgrowthtypetemperaturerange
43518positivegrowth4-41
43518positiveoptimum30mesophilic

culture pH

@refabilitytypepHPH range
43518positivegrowth4-10alkaliphile
43518positiveoptimum6.5

Physiology and metabolism

oxygen tolerance

  • @ref: 43518
  • oxygen tolerance: facultative anaerobe

halophily

  • @ref: 43518
  • salt: NaCl
  • growth: positive
  • tested relation: growth
  • concentration: 1-10 %(w/v)

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
4351816947citrate-assimilation
4351817632nitrate-reduction
4351818305arbutin+builds acid from
4351815824D-fructose+builds acid from
4351812936D-galactose+builds acid from
4351817634D-glucose+builds acid from
4351816899D-mannitol+builds acid from
4351816988D-ribose+builds acid from
4351817924D-sorbitol+builds acid from
435184853esculin+builds acid from
4351817754glycerol+builds acid from
4351830849L-arabinose+builds acid from
4351817306maltose+builds acid from
4351828053melibiose+builds acid from
43518320061methyl alpha-D-glucopyranoside+builds acid from
43518506227N-acetylglucosamine+builds acid from
43518potassium 5-dehydro-D-gluconate+builds acid from
4351832032potassium gluconate+builds acid from
4351816634raffinose+builds acid from
4351826546rhamnose+builds acid from
4351817814salicin+builds acid from
4351817992sucrose+builds acid from
4351832528turanose+builds acid from
43518645522-hydroxybutyrate+respiration
43518167632-oxobutanoate+respiration
43518309162-oxoglutarate+respiration
43518620642,3-butanediol+respiration
4351830089acetate+respiration
4351817925alpha-D-glucose+respiration
4351873706bromosuccinate+respiration
4351817057cellobiose+respiration
4351815824D-fructose+respiration
4351815895D-galactonic acid lactone+respiration
4351812936D-galactose+respiration
435188391D-gluconate+respiration
4351816899D-mannitol+respiration
4351816024D-mannose+respiration
4351827605D-psicose+respiration
4351817924D-sorbitol+respiration
4351823652dextrin+respiration
4351815740formate+respiration
4351828066gentiobiose+respiration
4351817754glycerol+respiration
4351817596inosine+respiration
4351830849L-arabinose+respiration
4351817196L-asparagine+respiration
4351829991L-aspartate+respiration
4351829985L-glutamate+respiration
4351862345L-rhamnose+respiration
4351824996lactate+respiration
4351817306maltose+respiration
4351828053melibiose+respiration
4351837657methyl D-glucoside+respiration
4351851850methyl pyruvate+respiration
4351875146monomethyl succinate+respiration
43518506227N-acetylglucosamine+respiration
4351816634raffinose+respiration
43518143136succinamate+respiration
4351830031succinate+respiration
4351817992sucrose+respiration
4351817748thymidine+respiration
4351827082trehalose+respiration
4351832528turanose+respiration
4351816704uridine+respiration
4351817151xylitol+respiration

metabolite production

@refChebi-IDmetaboliteproduction
4351816136hydrogen sulfideno
4351835581indoleno
4351815688acetoinyes

enzymes

@refvalueactivityec
43518catalase+1.11.1.6
43518cytochrome oxidase-1.9.3.1
43518lysine decarboxylase-4.1.1.18
43518ornithine decarboxylase-4.1.1.17
43518urease-3.5.1.5
43518beta-galactosidase-3.2.1.23
43518tryptophan deaminase-4.1.99.1
43518gelatinase-
43518arginine dihydrolase-3.5.3.6

Isolation, sampling and environmental information

isolation

  • @ref: 43518
  • sample type: symptomatic bark of Populus x euramericana canker
  • geographic location: Puyang City, Henan Province
  • country: China
  • origin.country: CHN
  • continent: Asia

isolation source categories

Cat1Cat2Cat3
#Host#Plants#Tree
#Host Body-Site#Plant#Bark

Sequence information

GC content

  • @ref: 43518
  • GC-content: 56.1
  • method: thermal denaturation, midpoint method (Tm)

External links

@ref: 43518

culture collection no.: CFCC 11935, KCTC 42841

literature

  • topic: Phylogeny
  • Pubmed-ID: 28875909
  • title: Brenneria populi subsp. brevivirga subsp. nov. isolated from symptomatic bark of Populus x euramericana canker, and description of Brenneria populi subsp. populi subsp. nov.
  • authors: Zheng MH, Piao CG, Xue H, Guo MW, Li Y
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijsem.0.002183
  • year: 2017
  • mesh: Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/genetics, Enterobacteriaceae/*classification/genetics/isolation & purification, Multilocus Sequence Typing, Nucleic Acid Hybridization, *Phylogeny, Plant Bark/*microbiology, Plant Diseases/*microbiology, Populus/*microbiology, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA
  • topic2: Transcriptome

Reference

@idauthorstitledoi/urljournalpubmed
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
43518Ming-hui Zheng, Chun-gen Piao, Han Xue, Min-wei Guo, Yong LiBrenneria populi subsp. Brevivirga subsp. nov. isolated from symptomatic bark of Populus euramericana canker, and description of Brenneria populi subsp. Populi subsp. nov.10.1099/ijsem.0.002183IJSEM 67: 3633-3638 201728875909