Name: Brenneria populi D9-5
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 140739

Type strain:

Species: Brenneria populi

Strain Designation: D9-5

Culture col. no.: CFCC 11963, KCTC 42088

NCBI tax ID(s): 1505588 (species)

Section

Brenneria populi D9-5 is a facultative anaerobe, Gram-negative, motile bacterium that forms circular colonies and was isolated from symptomatic bark of Populus x euramericana canker.

colony-forming
Gram-negative
motile
rod-shaped
facultative anaerobe
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Enterobacterales*
	Family	*Pectobacteriaceae*
	Genus	*Brenneria*
	Species	**Brenneria populi**
	Full Scientific Name (LPSN)	Brenneria populi Li et al. 2015

Information on morphological and physiological properties Morphology

[Ref.: #43518]	Gram stain	negative

[Ref.: #43518]	Cell length	1.3-1.5 µm

[Ref.: #43518]	Cell width	0.6 µm

[Ref.: #43518]	Cell shape	rod-shaped

[Ref.: #43518]	Motility	yes

[Ref.: #43518]	Colony size	1-1.2 mm
[Ref.: #43518]	Colony color	milk-white
[Ref.: #43518]	Colony shape	circular
[Ref.: #43518]	Incubation period	2 days
[Ref.: #43518]	Cultivation medium used	TSA agar

Information on culture and growth conditions Culture and growth conditions

[Ref.: #43518]

Culture medium

Trypticase Soy Agar (TSA)

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Culture medium growth

	Temperatures	Kind of temperature		Temperature
[Ref.: #43518]			growth	4-41 °C
[Ref.: #43518]			optimum	30 °C

[Ref.: #43518]

Temperature range

mesophilic

	pH	Kind of pH		pH
[Ref.: #43518]			optimum	6.5
[Ref.: #43518]			growth	4-10

Information on physiology and metabolism Physiology and metabolism

[Ref.: #43518]

Oxygen tolerance

facultative anaerobe

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #43518]		NaCl		growth	1-6	%(w/v)

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #43518]	(S)-lactate ChEBI	+	respiration
[Ref.: #43518]	2,3-butanediol ChEBI	+	respiration
[Ref.: #43518]	2-hydroxybutyrate ChEBI	+	respiration
[Ref.: #43518]	2-oxobutanoate ChEBI	+	respiration
[Ref.: #43518]	acetate ChEBI	+	respiration
[Ref.: #43518]	alpha-D-glucose ChEBI	+	respiration
[Ref.: #43518]	amygdalin ChEBI	+	builds acid from
[Ref.: #43518]	arbutin ChEBI	+	builds acid from
[Ref.: #43518]	bromosuccinate ChEBI	+	respiration
[Ref.: #43518]	citrate ChEBI	-	assimilation
[Ref.: #43518]	D-fructose ChEBI	+	builds acid from
[Ref.: #43518]	D-fructose ChEBI	+	respiration
[Ref.: #43518]	D-galactose ChEBI	+	builds acid from
[Ref.: #43518]	D-galactose ChEBI	+	respiration
[Ref.: #43518]	D-gluconate ChEBI	+	respiration
[Ref.: #43518]	D-glucose ChEBI	+	builds acid from
[Ref.: #43518]	D-mannitol ChEBI	+	builds acid from
[Ref.: #43518]	D-mannitol ChEBI	+	respiration
[Ref.: #43518]	D-mannose ChEBI	+	builds acid from
[Ref.: #43518]	D-psicose ChEBI	+	respiration
[Ref.: #43518]	D-ribose ChEBI	+	builds acid from
[Ref.: #43518]	D-sorbitol ChEBI	+	builds acid from
[Ref.: #43518]	D-sorbitol ChEBI	+	respiration
[Ref.: #43518]	D-xylose ChEBI	+	builds acid from
[Ref.: #43518]	dextrin ChEBI	+	respiration
[Ref.: #43518]	esculin ChEBI	+	builds acid from
[Ref.: #43518]	formate ChEBI	+	respiration
[Ref.: #43518]	galactitol ChEBI	+	builds acid from
[Ref.: #43518]	glycerol ChEBI	+	builds acid from
[Ref.: #43518]	glycerol ChEBI	+	respiration
[Ref.: #43518]	L-arabinose ChEBI	+	builds acid from
[Ref.: #43518]	L-arabinose ChEBI	+	respiration
[Ref.: #43518]	L-asparagine ChEBI	+	respiration
[Ref.: #43518]	L-aspartate ChEBI	+	respiration
[Ref.: #43518]	L-rhamnose ChEBI	+	respiration
[Ref.: #43518]	maltose ChEBI	+	builds acid from
[Ref.: #43518]	maltose ChEBI	+	respiration
[Ref.: #43518]	melibiose ChEBI	+	builds acid from
[Ref.: #43518]	melibiose ChEBI	+	respiration
[Ref.: #43518]	methyl alpha-D-glucopyranoside ChEBI	+	builds acid from
[Ref.: #43518]	methyl D-glucoside ChEBI	+	respiration
[Ref.: #43518]	methyl pyruvate ChEBI	+	respiration
[Ref.: #43518]	monomethyl succinate ChEBI	+	respiration
[Ref.: #43518]	N-acetylglucosamine ChEBI	+	builds acid from
[Ref.: #43518]	N-acetylglucosamine ChEBI	+	respiration
[Ref.: #43518]	nitrate ChEBI	-	reduction
[Ref.: #43518]	raffinose ChEBI	+	builds acid from
[Ref.: #43518]	raffinose ChEBI	+	respiration
[Ref.: #43518]	salicin ChEBI	+	builds acid from
[Ref.: #43518]	succinate ChEBI	+	respiration
[Ref.: #43518]	sucrose ChEBI	+	builds acid from
[Ref.: #43518]	sucrose ChEBI	+	respiration
[Ref.: #43518]	thymidine ChEBI	+	respiration
[Ref.: #43518]	turanose ChEBI	+	respiration
[Ref.: #43518]	uridine ChEBI	+	respiration
[Ref.: #43518]	xylitol ChEBI	+	respiration
	Only first 10 entries are displayed. Click here to see all.

	Metabolite	Production
[Ref.: #43518]	acetoin ChEBI	yes
[Ref.: #43518]	hydrogen sulfide ChEBI	no
[Ref.: #43518]	indole ChEBI	no

	Enzyme	Enzyme activity	EC number
[Ref.: #43518]	arginine dihydrolase	+	3.5.3.6
[Ref.: #43518]	beta-galactosidase	-	3.2.1.23
[Ref.: #43518]	catalase	+	1.11.1.6
[Ref.: #43518]	cytochrome oxidase	-	1.9.3.1
[Ref.: #43518]	gelatinase	-
[Ref.: #43518]	lysine decarboxylase	-	4.1.1.18
[Ref.: #43518]	ornithine decarboxylase	-	4.1.1.17
[Ref.: #43518]	tryptophan deaminase	-	4.1.99.1
[Ref.: #43518]	urease	-	3.5.1.5

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #43518]	Sample type/isolated from	symptomatic bark of Populus x euramericana canker
[Ref.: #43518]	Geographic location (country and/or sea, region)	Puyang City, Henan Province
[Ref.: #43518]	Country	China
[Ref.: #43518]	Country ISO 3 Code	CHN
[Ref.: #43518]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Host	#Plants	#Tree
#Host Body-Site	#Plant	#Bark

What are isolation sources categories?

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

[Ref.: #43518]

GC-content

54.9-55.7 mol%

thermal denaturation, midpoint method (Tm)

Availability in culture collections External links

[Ref.: #43518]

Culture collection no.

CFCC 11963, KCTC 42088

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Brenneria populi subsp. brevivirga subsp. nov. isolated from symptomatic bark of Populus x euramericana canker, and description of Brenneria populi subsp. populi subsp. nov.	Zheng MH, Piao CG, Xue H, Guo MW, Li Y	Int J Syst Evol Microbiol	10.1099/ijsem.0.002183	2017	*
Phylogeny	Brenneria populi sp. nov., isolated from symptomatic bark of Populusxeuramericana canker.	Li Y, Fang W, Xue H, Liang WX, Wang LF, Tian GZ, Wang XZ, Lin CL, Li X, Piao CG	Int J Syst Evol Microbiol	10.1099/ijs.0.066068-0	2014	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#43518

Ming-hui Zheng, Chun-gen Piao, Han Xue, Min-wei Guo, Yong Li: Brenneria populi subsp. Brevivirga subsp. nov. isolated from symptomatic bark of Populus euramericana canker, and description of Brenneria populi subsp. Populi subsp. nov.. IJSEM 67: 3633 - 3638 2017 ( DOI 10.1099/ijsem.0.002183 , PubMed 28875909 )

* These data were automatically processed and therefore are not curated

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