Name: Flavobacterium flaviflagrans CB-3
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 140682

Type strain:

Species: Flavobacterium flaviflagrans

Strain Designation: CB-3

Culture col. no.: KEMB 9005-535, KACC 19112, NBRC 112704

NCBI tax ID(s): 2027552 (species)

Section

Flavobacterium flaviflagrans CB-3 is an aerobe, thermophilic, Gram-negative bacterium that forms circular colonies and was isolated from forest soil in Kyonggi University, Suwon, Gyeonggi-Do.

colony-forming
Gram-negative
rod-shaped
aerobe
thermophilic
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacteroidota*
	Class	*Flavobacteriia*
	Order	*Flavobacteriales*
	Family	*Flavobacteriaceae*
	Genus	*Flavobacterium*
	Species	**Flavobacterium flaviflagrans**
	Full Scientific Name (LPSN)	Flavobacterium flaviflagrans Dahal et al. 2017

Information on morphological and physiological properties Morphology

[Ref.: #43447]	Gram stain	negative

[Ref.: #43447]	Cell length	1.9-2.7 µm

[Ref.: #43447]	Cell width	0.4-0.8 µm

[Ref.: #43447]	Cell shape	rod-shaped

[Ref.: #43447]	Motility	no

[Ref.: #43447]	Colony size	2-3 mm
[Ref.: #43447]	Colony color	Yellow
[Ref.: #43447]	Colony shape	circular
[Ref.: #43447]	Incubation period	4 days
[Ref.: #43447]	Cultivation medium used	TSA agar

[Ref.: #43447]	Pigment production	no
[Ref.: #43447]	Pigment name	Flexirubin

Information on culture and growth conditions Culture and growth conditions

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Culture medium

BHI

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Culture medium growth

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Culture medium

LBA

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Culture medium growth

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Culture medium

Nutrient agar (NA)

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Culture medium growth

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Culture medium

Reasoner's 2A agar (R2A)

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Culture medium growth

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Culture medium

Trypticase Soy Agar (TSA)

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Culture medium growth

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Culture medium

Veal infusion agar

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Culture medium growth

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Culture medium

MacConkey agar

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Culture medium growth

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Culture medium

Marine agar (MA)

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Culture medium growth

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Culture medium

PDA

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Culture medium growth

		Temperature
[Ref.: #43447]	maximum	42 °C
[Ref.: #43447]	growth	15-42 °C
[Ref.: #43447]	optimum	20-35 °C

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Temperature range

thermophilic

	pH	Kind of pH		pH
[Ref.: #43447]			optimum	7-9
[Ref.: #43447]			growth	5.5-9.5

Information on physiology and metabolism Physiology and metabolism

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Oxygen tolerance

aerobe

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Ability of spore formation

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Halophily / tolerance level

non-halophilic

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #43447]		NaCl		maximum	1.5	%(w/v)
[Ref.: #43447]		NaCl		optimum	0	%(w/v)

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #43447]	carboxymethylcellulose ChEBI	-	hydrolysis
[Ref.: #43447]	casein	+	hydrolysis
[Ref.: #43447]	chitin ChEBI	-	hydrolysis
[Ref.: #43447]	dna ChEBI	+	hydrolysis
[Ref.: #43447]	esculin ChEBI	-	hydrolysis
[Ref.: #43447]	esculin ferric citrate	+/-	hydrolysis
[Ref.: #43447]	gelatin ChEBI	+	hydrolysis
[Ref.: #43447]	glucose ChEBI	-	fermentation
[Ref.: #43447]	nitrate ChEBI	-	reduction
[Ref.: #43447]	starch ChEBI	-	hydrolysis
[Ref.: #43447]	tryptophan ChEBI	-	energy source
[Ref.: #43447]	tween 40 ChEBI	+/-	hydrolysis
[Ref.: #43447]	tween 60 ChEBI	-	hydrolysis
[Ref.: #43447]	tween 80 ChEBI	-	hydrolysis
[Ref.: #43447]	tyrosine ChEBI	+/-	hydrolysis
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #43447]		hydrogen sulfide ChEBI	no
[Ref.: #43447]		indole ChEBI	no

	Physiological tests	Metabolite	Indole test
[Ref.: #43447]		indole ChEBI	-

	Enzyme	Enzyme activity	EC number
[Ref.: #43447]	acid phosphatase	+	3.1.3.2
[Ref.: #43447]	alkaline phosphatase	+	3.1.3.1
[Ref.: #43447]	alpha-chymotrypsin	+	3.4.21.1
[Ref.: #43447]	alpha-fucosidase	-	3.2.1.51
[Ref.: #43447]	alpha-galactosidase	-	3.2.1.22
[Ref.: #43447]	alpha-glucosidase	-	3.2.1.20
[Ref.: #43447]	alpha-mannosidase	-	3.2.1.24
[Ref.: #43447]	beta-galactosidase	-	3.2.1.23
[Ref.: #43447]	beta-glucosidase	-	3.2.1.21
[Ref.: #43447]	beta-glucuronidase	-	3.2.1.31
[Ref.: #43447]	catalase	-	1.11.1.6
[Ref.: #43447]	cystine arylamidase	+/-	3.4.11.3
[Ref.: #43447]	cytochrome oxidase	+	1.9.3.1
[Ref.: #43447]	DNase	+
[Ref.: #43447]	esterase (C 4)	+
[Ref.: #43447]	esterase Lipase (C 8)	+
[Ref.: #43447]	leucine arylamidase	+	3.4.11.1
[Ref.: #43447]	lipase (C 14)	-
[Ref.: #43447]	N-acetyl-beta-glucosaminidase	+	3.2.1.52
[Ref.: #43447]	naphthol-AS-BI-phosphohydrolase	+
[Ref.: #43447]	trypsin	+	3.4.21.4
[Ref.: #43447]	tryptophan deaminase	-	4.1.99.1
[Ref.: #43447]	urease	-	3.5.1.5
[Ref.: #43447]	valine arylamidase	+
	Only first 10 entries are displayed. Click here to see all.

Fatty acid profile

Metadata FA analysis

Reference

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Fatty acid	Percentage
C15:0 iso	51.8
C15:0 iso 3OH	12
C17:0 iso 3OH	10.9
C17:1 iso ω9c / C16:0 10-methyl	9.4
C15:1 iso G	4.1
C13:0 iso	2.2
C16:1ω7c / C16:1ω6c	2
C15:0 3OH	1.3
C18:1ω5c	1.1
C15:1ω6c	0.7
C15:0 anteiso	0.7
C16:0 3OH	0.6
C16:0 iso 3OH	0.3
C14:0 iso	0.3
Unknown 10.928 / C12:0 aldehyde	0.3
C14:0	0.3
C11:0 iso 3OH	0.2
C13:0	0.2
C16:0 iso	0.2
C15:0 2OH	0.2
C16:0	0.2
C14:0 iso 3OH	0.2
C13:0 iso 3OH	0.2
C17:0 2OH	0.1
C14:1ω5c	0.1
C17:0 iso	0.1
C18:0	0.1
C8:0 3OH	0.1

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #43447]	Sample type/isolated from	forest soil in Kyonggi University, Suwon, Gyeonggi-Do
[Ref.: #43447]	Geographic location (country and/or sea, region)	Gyeonggi-Do, Suwon
[Ref.: #43447]	Country	Republic of Korea
[Ref.: #43447]	Country ISO 3 Code	KOR
[Ref.: #43447]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental	#Terrestrial	#Forest
#Environmental	#Terrestrial	#Soil

What are isolation sources categories?

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Global distribution of 16S sequence KY031328 (>99% sequence identity) for Flavobacterium from Microbeatlas

Aquatic Samples	2409
Soil Samples	1132
Animal Samples	603
Plant Samples	123
Total Samples	4267

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #43447]	16S rRNA gene sequence	KY031328		GenBank

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GC-content

35.8 mol%

high performance liquid chromatography (HPLC)

Availability in culture collections External links

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Culture collection no.

KEMB 9005-535, KACC 19112, NBRC 112704

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Flavobacterium flaviflagrans sp. nov., a bacterium of the family Flavobacteriaceae isolated from forest soil.	Dahal RH, Chaudhary DK, Kim J	Int J Syst Evol Microbiol	10.1099/ijsem.0.002000	2017	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#43447

Ram Hari Dahal, Dhiraj Kumar Chaudhary, Jaisoo Kim: Flavobacterium flaviflagrans sp. nov., a bacterium of the family Flavobacteriaceae isolated from forest soil. IJSEM 67: 2653 - 2659 2017 ( DOI 10.1099/ijsem.0.002000 , PubMed 28809147 )

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

* These data were automatically processed and therefore are not curated

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