Name: Emticicia soli ZZ-4
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 140681

Type strain:

Species: Emticicia soli

Strain Designation: ZZ-4

Culture col. no.: KCTC 52344, CCTCC AB 2016137

Strain history: <- Qing Chen, Zaozhuang Univ.

NCBI tax ID(s): 2027878 (species)

Section

Emticicia soli ZZ-4 is an aerobe, Gram-negative, rod-shaped bacterium that was isolated from From TBBPA-contaminated soil.

Gram-negative
rod-shaped
aerobe
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacteroidota*
	Class	*Cytophagia*
	Order	*Cytophagales*
	Family	*Spirosomataceae*
	Genus	*Emticicia*
	Species	**Emticicia soli**
	Full Scientific Name (LPSN)	Emticicia soli Chen et al. 2017

Information on morphological and physiological properties Morphology

[Ref.: #43446]	Gram stain	negative
[Ref.: #67771]	Gram stain	negative

[Ref.: #43446]	Cell length	2.5-3 µm

[Ref.: #43446]	Cell width	0.2-0.5 µm

[Ref.: #43446]	Cell shape	rod-shaped
[Ref.: #67771]	Cell shape	rod-shaped

[Ref.: #43446]	Motility	no
[Ref.: #67771]	Motility	no

[Ref.: #43446]	Colony size	1.5 mm
[Ref.: #43446]	Colony color	Orange
[Ref.: #43446]	Cultivation medium used	TSA agar

Information on culture and growth conditions Culture and growth conditions

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Culture medium

LB (Luria-Bertani) MEDIUM

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Culture medium growth

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Culture medium

Nutrient agar (NA)

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Culture medium growth

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Culture medium

Reasoner's 2A agar (R2A)

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Culture medium growth

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Culture medium

Trypticase Soy Agar (TSA)

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Culture medium growth

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Culture medium

EMB

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Culture medium growth

	Temperatures	Kind of temperature		Temperature
[Ref.: #43446]			growth	10-37 °C
[Ref.: #67771]			growth	30 °C

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Temperature range

mesophilic

	pH	Kind of pH		pH
[Ref.: #43446]			optimum	7
[Ref.: #43446]			growth	5.5-9

Information on physiology and metabolism Physiology and metabolism

[Ref.: #43446]	Oxygen tolerance	aerobe
[Ref.: #67771]	Oxygen tolerance	aerobe

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Ability of spore formation

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #43446]		NaCl		growth	0-2	%(w/v)
[Ref.: #43446]		NaCl		optimum	0.5	%(w/v)

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Observation

quinones: MK-7

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #43446]	3-hydroxybenzoate ChEBI	-	carbon source
[Ref.: #43446]	4-hydroxybenzoate ChEBI	-	carbon source
[Ref.: #43446]	acetate ChEBI	-	carbon source
[Ref.: #43446]	adipate ChEBI	-	carbon source
[Ref.: #43446]	cellobiose ChEBI	-	carbon source
[Ref.: #43446]	citrate ChEBI	-	carbon source
[Ref.: #43446]	D-glucose ChEBI	+	carbon source
[Ref.: #43446]	D-glucose ChEBI	+	fermentation
[Ref.: #43446]	D-mannitol ChEBI	-	carbon source
[Ref.: #43446]	D-mannose ChEBI	+	carbon source
[Ref.: #43446]	D-ribose ChEBI	-	carbon source
[Ref.: #43446]	D-sorbitol ChEBI	+	carbon source
[Ref.: #43446]	decanoate ChEBI	-	carbon source
[Ref.: #43446]	gelatin ChEBI	-	hydrolysis
[Ref.: #43446]	glycogen ChEBI	+	carbon source
[Ref.: #43446]	itaconate ChEBI	-	carbon source
[Ref.: #43446]	L-alanine ChEBI	-	carbon source
[Ref.: #43446]	L-arabinose ChEBI	-	carbon source
[Ref.: #43446]	L-fucose ChEBI	+	carbon source
[Ref.: #43446]	L-histidine ChEBI	-	carbon source
[Ref.: #43446]	L-proline ChEBI	-	carbon source
[Ref.: #43446]	L-rhamnose ChEBI	-	carbon source
[Ref.: #43446]	L-serine ChEBI	-	carbon source
[Ref.: #43446]	lactate ChEBI	-	carbon source
[Ref.: #43446]	lactose ChEBI	-	carbon source
[Ref.: #43446]	malate ChEBI	-	carbon source
[Ref.: #43446]	maltose ChEBI	+	carbon source
[Ref.: #43446]	melibiose ChEBI	+	carbon source
[Ref.: #43446]	myo-inositol ChEBI	-	carbon source
[Ref.: #43446]	N-acetylglucosamine ChEBI	+	carbon source
[Ref.: #43446]	nitrate ChEBI	-	reduction
[Ref.: #43446]	phenylacetate ChEBI	-	carbon source
[Ref.: #43446]	potassium 2-dehydro-D-gluconate	-	carbon source
[Ref.: #43446]	potassium 5-dehydro-D-gluconate	-	carbon source
[Ref.: #43446]	potassium gluconate ChEBI	-	carbon source
[Ref.: #43446]	propionate ChEBI	-	carbon source
[Ref.: #43446]	salicin ChEBI	+	carbon source
[Ref.: #43446]	sodium malonate ChEBI	-	carbon source
[Ref.: #43446]	starch ChEBI	+	carbon source
[Ref.: #43446]	starch ChEBI	+	hydrolysis
[Ref.: #43446]	suberic acid ChEBI	-	carbon source
[Ref.: #43446]	succinate ChEBI	-	carbon source
[Ref.: #43446]	sucrose ChEBI	-	carbon source
[Ref.: #43446]	tween 80 ChEBI	+	hydrolysis
[Ref.: #43446]	valerate ChEBI	-	carbon source
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #43446]		indole ChEBI	yes

	Enzyme	Enzyme activity	EC number
[Ref.: #43446]	acid phosphatase	-	3.1.3.2
[Ref.: #43446]	alkaline phosphatase	-	3.1.3.1
[Ref.: #43446]	alpha-chymotrypsin	-	3.4.21.1
[Ref.: #43446]	alpha-fucosidase	-	3.2.1.51
[Ref.: #43446]	alpha-galactosidase	-	3.2.1.22
[Ref.: #43446]	alpha-glucosidase	-	3.2.1.20
[Ref.: #43446]	alpha-mannosidase	+	3.2.1.24
[Ref.: #43446]	arginine dihydrolase	-	3.5.3.6
[Ref.: #43446]	beta-galactosidase	-	3.2.1.23
[Ref.: #43446]	beta-glucosidase	-	3.2.1.21
[Ref.: #43446]	beta-glucuronidase	-	3.2.1.31
[Ref.: #43446]	catalase	+	1.11.1.6
[Ref.: #43446]	cystine aminopeptidase	-	3.4.11.3
[Ref.: #43446]	cystine arylamidase	-	3.4.11.3
[Ref.: #43446]	cytochrome oxidase	+	1.9.3.1
[Ref.: #43446]	esterase (C 4)	-
[Ref.: #43446]	esterase Lipase (C 8)	-
[Ref.: #43446]	leucine aminopeptidase	-	3.4.1.1
[Ref.: #43446]	leucine arylamidase	-	3.4.11.1
[Ref.: #43446]	lipase (C 14)	+
[Ref.: #43446]	N-acetyl-beta-glucosaminidase	+	3.2.1.52
[Ref.: #43446]	naphthol-AS-BI-phosphohydrolase	-
[Ref.: #43446]	urease	-	3.5.1.5
[Ref.: #43446]	valine aminopeptidase	-
	Only first 10 entries are displayed. Click here to see all.

Fatty acid profile

Metadata FA analysis

Reference

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Fatty acid	Percentage
C15:0 iso	37.1
C16:1ω6c / C16:1ω7	21.8
C17:0 iso 3OH	14.2
C16:1ω5c	8.3
C16:0	4.3
C15:0 iso 3OH	2.3
C16:0 3OH	2
C18:0	1.9
C18:1ω7c / C18:1ω6c	1.3
C15:0 anteiso	1.3
C14:0	0.9
C20:0	0.6

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #67771]	Sample type/isolated from	From TBBPA-contaminated soil
[Ref.: #67771]	Geographic location (country and/or sea, region)	Suqian City, Jiangsu Province
[Ref.: #67771]	Country	China
[Ref.: #67771]	Country ISO 3 Code	CHN
[Ref.: #67771]	Continent	Asia

[Ref.: #43446]	Sample type/isolated from	TBBPA-contaminated soil from Suqian City, Jiangsu Province
[Ref.: #43446]	Geographic location (country and/or sea, region)	Jiangsu Province, Suqian City
[Ref.: #43446]	Country	China
[Ref.: #43446]	Country ISO 3 Code	CHN
[Ref.: #43446]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Engineered	#Contamination	-
#Environmental	#Terrestrial	#Soil

What are isolation sources categories?

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Global distribution of 16S sequence KX910785 (>99% sequence identity) for Emticicia soli subclade from Microbeatlas

Aquatic Samples	313
Soil Samples	245
Animal Samples	239
Plant Samples	129
Total Samples	926

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #43446]	16S rRNA gene sequence	KX910785		GenBank

[Ref.: #43446]	GC-content	38.3 mol%	Thermal denaturation, fluorometry
[Ref.: #67771]	GC-content	38.3 mol%

Availability in culture collections External links

[Ref.: #43446]

Culture collection no.

KCTC 52344, CCTCC AB 2016137

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Emticicia agri sp. nov., a novel member of the family Cytophagaceae.	Ten LN, Li W, Ha A, Kim MK, Rooney AP, Jung HY	Int J Syst Evol Microbiol	10.1099/ijsem.0.003651	2019	*
Phylogeny	Emticicia soli sp. nov., a novel member of the family 'Flexibacteraceae', isolated from tetrabromobisphenol A-contaminated soil.	Chen Q, Zang XX, Hang X, Wang HM, Jia WB, Li SP, Jiang JD, Chen K	Int J Syst Evol Microbiol	10.1099/ijsem.0.002041	2017	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#43446

Qing Chen, Xiao-Xia Zang, Xing Hang, Hong-Mei Wang, Wei-Bin Jia, Shun-Peng Li, Jian-Dong Jiang, Kai Chen: Emticicia soli sp. nov., a novel member of the family 'Flexibacteraceae', isolated from tetrabromobisphenol A-contaminated soil. IJSEM 67: 2885 - 2890 2017 ( DOI 10.1099/ijsem.0.002041 , PubMed 28820097 )

#67771 Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

* These data were automatically processed and therefore are not curated

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