Name: Hymenobacter pallidus LYH-12
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 140680

Type strain:

Species: Hymenobacter pallidus

Strain Designation: LYH-12

Culture col. no.: BCRC 80919, LMG 29171, KCTC 42898

Strain history: <- Wen-Ming Chen, National Kaohsiung Marine Univ.

NCBI tax ID(s): 1715646 (species)

Section

Hymenobacter pallidus LYH-12 is an aerobe, Gram-negative, rod-shaped bacterium that forms circular colonies and was isolated from a fish culture pond in the Sanyi Township.

colony-forming
Gram-negative
rod-shaped
aerobe
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacteroidota*
	Class	*Cytophagia*
	Order	*Cytophagales*
	Family	*Hymenobacteraceae*
	Genus	*Hymenobacter*
	Species	**Hymenobacter pallidus**
	Full Scientific Name (LPSN)	Hymenobacter pallidus Sheu et al. 2017

Information on morphological and physiological properties Morphology

[Ref.: #43445]	Gram stain	negative
[Ref.: #67771]	Gram stain	negative

[Ref.: #43445]	Cell length	1.8-2.0 µm

[Ref.: #43445]	Cell width	0.9-1.1 µm

[Ref.: #43445]	Cell shape	rod-shaped
[Ref.: #67771]	Cell shape	rod-shaped

[Ref.: #43445]	Motility	no
[Ref.: #67771]	Motility	no

[Ref.: #43445]	Colony size	4.2-5 mm
[Ref.: #43445]	Colony color	light pink
[Ref.: #43445]	Colony shape	circular
[Ref.: #43445]	Incubation period	3 days
[Ref.: #43445]	Cultivation medium used	R2A agar

[Ref.: #43445]	Pigment production	no
[Ref.: #43445]	Pigment name	Flexirubin-type
[Ref.: #43445]	Pigment production	yes
[Ref.: #43445]	Pigment name	Carotenoid

Information on culture and growth conditions Culture and growth conditions

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Culture medium

Nutrient agar (NA)

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Culture medium growth

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Culture medium

Reasoner's 2A agar (R2A)

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Culture medium growth

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Culture medium

Trypticase Soy Agar (TSA)

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Culture medium growth

		Temperature
[Ref.: #43445]	growth	10-37 °C
[Ref.: #43445]	optimum	20-30 °C
[Ref.: #67771]	growth	25 °C

[Ref.: #67771]

Temperature range

mesophilic

	pH	Kind of pH		pH
[Ref.: #43445]			optimum	7
[Ref.: #43445]			growth	6.5-7.5

Information on physiology and metabolism Physiology and metabolism

[Ref.: #43445]	Oxygen tolerance	aerobe
[Ref.: #67771]	Oxygen tolerance	aerobe

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #43445]		NaCl		growth	0-1	%
[Ref.: #43445]		NaCl		optimum	0.5	%

[Ref.: #67771]

Observation

quinones: MK-7

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #43445]	adipate ChEBI	-	assimilation
[Ref.: #43445]	arabinose ChEBI	-	assimilation
[Ref.: #43445]	carboxymethylcellulose ChEBI	+	hydrolysis
[Ref.: #43445]	casein	+	hydrolysis
[Ref.: #43445]	cellobiose ChEBI	-	carbon source
[Ref.: #43445]	chitin ChEBI	-	hydrolysis
[Ref.: #43445]	citrate ChEBI	-	assimilation
[Ref.: #43445]	D-fructose ChEBI	-	carbon source
[Ref.: #43445]	D-galactose ChEBI	-	carbon source
[Ref.: #43445]	D-glucose ChEBI	+	carbon source
[Ref.: #43445]	D-mannitol ChEBI	-	carbon source
[Ref.: #43445]	D-mannose ChEBI	-	carbon source
[Ref.: #43445]	D-sorbitol ChEBI	-	carbon source
[Ref.: #43445]	decanoate ChEBI	-	assimilation
[Ref.: #43445]	dextrin ChEBI	-	carbon source
[Ref.: #43445]	dna ChEBI	+	hydrolysis
[Ref.: #43445]	esculin ChEBI	+	hydrolysis
[Ref.: #43445]	gelatin ChEBI	+	hydrolysis
[Ref.: #43445]	gluconate ChEBI	-	assimilation
[Ref.: #43445]	glucose ChEBI	-	assimilation
[Ref.: #43445]	lecithin ChEBI	-	hydrolysis
[Ref.: #43445]	malate ChEBI	-	assimilation
[Ref.: #43445]	maltose ChEBI	-	assimilation
[Ref.: #43445]	maltose ChEBI	-	carbon source
[Ref.: #43445]	mannitol ChEBI	-	assimilation
[Ref.: #43445]	mannose ChEBI	-	assimilation
[Ref.: #43445]	N-acetylglucosamine ChEBI	-	assimilation
[Ref.: #43445]	N-acetylglucosamine ChEBI	-	carbon source
[Ref.: #43445]	nitrate ChEBI	-	reduction
[Ref.: #43445]	phenylacetate ChEBI	-	assimilation
[Ref.: #43445]	raffinose ChEBI	-	carbon source
[Ref.: #43445]	starch ChEBI	+	hydrolysis
[Ref.: #43445]	sucrose ChEBI	-	carbon source
[Ref.: #43445]	trehalose ChEBI	-	carbon source
[Ref.: #43445]	tween 20 ChEBI	+	hydrolysis
[Ref.: #43445]	tween 40 ChEBI	+	carbon source
[Ref.: #43445]	tween 40 ChEBI	+	hydrolysis
[Ref.: #43445]	tween 60 ChEBI	+	hydrolysis
[Ref.: #43445]	tween 80 ChEBI	-	hydrolysis
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #43445]		indole ChEBI	no

	Enzyme	Enzyme activity	EC number
[Ref.: #43445]	6-phospho-beta-galactosidase	-	3.2.1.85
[Ref.: #43445]	acid phosphatase	+	3.1.3.2
[Ref.: #43445]	alkaline phosphatase	+	3.1.3.1
[Ref.: #43445]	alpha-chymotrypsin	-	3.4.21.1
[Ref.: #43445]	alpha-fucosidase	-	3.2.1.51
[Ref.: #43445]	alpha-galactosidase	-	3.2.1.22
[Ref.: #43445]	alpha-glucosidase	+	3.2.1.20
[Ref.: #43445]	alpha-mannosidase	-	3.2.1.24
[Ref.: #43445]	arginine dihydrolase	-	3.5.3.6
[Ref.: #43445]	beta-galactosidase	-	3.2.1.23
[Ref.: #43445]	beta-glucosidase	+	3.2.1.21
[Ref.: #43445]	beta-glucuronidase	-	3.2.1.31
[Ref.: #43445]	catalase	+	1.11.1.6
[Ref.: #43445]	cystine arylamidase	+	3.4.11.3
[Ref.: #43445]	cytochrome oxidase	+	1.9.3.1
[Ref.: #43445]	esterase (C 4)	+
[Ref.: #43445]	esterase Lipase (C 8)	+
[Ref.: #43445]	leucine arylamidase	+	3.4.11.1
[Ref.: #43445]	lipase	-
[Ref.: #43445]	lipase (C 14)	+
[Ref.: #43445]	N-acetyl-beta-glucosaminidase	+	3.2.1.52
[Ref.: #43445]	naphthol-AS-BI-phosphohydrolase	+
[Ref.: #43445]	trypsin	+	3.4.21.4
[Ref.: #43445]	urease	-	3.5.1.5
[Ref.: #43445]	valine arylamidase	+
	Only first 10 entries are displayed. Click here to see all.

Fatty acid profile

Metadata FA analysis

Reference

[Ref.: #43445]

Fatty acid	Percentage
C15:0 iso	32.5
C16:1ω5c	12.8
C16:0	7
C16:1ω7c / C16:1ω6c	6.5
C17:0 iso 3OH	5.8
C17:1 anteiso ω9c	5.3
C17:0 iso	3.9
C17:1 iso I / C17:1 anteiso B	3.8
C18:1ω9c	2.5
Hydroxyl iso-C15:0 3-OH	2.4
C14:0 anteiso	2.4
C18:0	2.2
C12:0	1.3
C18:1ω7c	1.2
C14:0	1.1
C16:0 iso	1.1
C15:0 anteiso	1

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #43445]	Sample type/isolated from	a fish culture pond in the Sanyi Township
[Ref.: #43445]	Geographic location (country and/or sea, region)	Sanyi Township, MiaoLI county
[Ref.: #43445]	Country	Taiwan
[Ref.: #43445]	Country ISO 3 Code	TWN
[Ref.: #43445]	Continent	Asia

[Ref.: #67771]	Sample type/isolated from	From fish culture ponds
[Ref.: #67771]	Geographic location (country and/or sea, region)	the Sanyi Township, the vicinity of Miaoli County
[Ref.: #67771]	Country	Taiwan
[Ref.: #67771]	Country ISO 3 Code	TWN
[Ref.: #67771]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Engineered	#Food production	#Aquaculture
#Environmental	#Aquatic	#Pond (small)

What are isolation sources categories?

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #43445]	16S rRNA gene sequence	LN879491		GenBank

[Ref.: #43445]	GC-content	64.3 mol%	high performance liquid chromatography (HPLC)
[Ref.: #67771]	GC-content	64.3 mol%

Availability in culture collections External links

[Ref.: #43445]

Culture collection no.

BCRC 80919, LMG 29171, KCTC 42898

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Hymenobacter pallidus sp. nov., isolated from a freshwater fish culture pond.	Sheu SY, Li YS, Young CC, Chen WM	Int J Syst Evol Microbiol	10.1099/ijsem.0.002047	2017	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#43445

Shih-Yi Sheu, Yi-Shu Li, Chiu-Chung Young, Wen-Ming Chen: Hymenobacter pallidus sp. nov., isolated from a freshwater fish culture pond. IJSEM 67: 2915 - 2921 2017 ( DOI 10.1099/ijsem.0.002047 , PubMed 28820099 )

#67771 Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;
* These data were automatically processed and therefore are not curated

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