Name: Mucilaginibacter craterilacus N60A
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 140683

Type strain:

Species: Mucilaginibacter craterilacus

Strain Designation: N60A

Culture col. no.: KCTC 52404, NRRL B-65396

Strain history: <- Jung-Sook Lee, KRIBB

NCBI tax ID(s): 1861875 (species)

Section

Mucilaginibacter craterilacus N60A is an obligate aerobe, Gram-negative, rod-shaped bacterium that forms circular colonies and was isolated from sediment soil of crater lake, Baekrokdam, Hallasan, Jeju.

colony-forming
Gram-negative
rod-shaped
obligate aerobe
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacteroidota*
	Class	*Sphingobacteriia*
	Order	*Sphingobacteriales*
	Family	*Sphingobacteriaceae*
	Genus	*Mucilaginibacter*
	Species	**Mucilaginibacter craterilacus**
	Full Scientific Name (LPSN)	Mucilaginibacter craterilacus Lee et al. 2017

Information on morphological and physiological properties Morphology

[Ref.: #43448]	Gram stain	negative

[Ref.: #43448]	Cell length	1.8-3.2 µm

[Ref.: #43448]	Cell width	0.6-0.9 µm

[Ref.: #43448]	Cell shape	rod-shaped

[Ref.: #43448]	Motility	no

[Ref.: #43448]	Colony color	transparent, white
[Ref.: #43448]	Colony shape	circular
[Ref.: #43448]	Cultivation medium used	10x diluted R2A

[Ref.: #43448]	Pigment production	yes
[Ref.: #43448]	Pigment name	Flexirubin

Information on culture and growth conditions Culture and growth conditions

[Ref.: #43448]

Culture medium

tenfold diluted R2A

[Ref.: #43448]

Culture medium growth

		Temperature
[Ref.: #43448]	growth	10-30 °C
[Ref.: #43448]	optimum	25 °C
[Ref.: #67771]	growth	25 °C

[Ref.: #43448]	Temperature range	mesophilic
[Ref.: #67771]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #43448]			optimum	6.5
[Ref.: #43448]			growth	6-7

Information on physiology and metabolism Physiology and metabolism

[Ref.: #43448]	Oxygen tolerance	obligate aerobe
[Ref.: #67771]	Oxygen tolerance	aerobe

[Ref.: #43448]

Ability of spore formation

[Ref.: #43448]

Halophily / tolerance level

non-halophilic

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #43448]		NaCl		growth	0.5	%
[Ref.: #43448]		NaCl		optimum	0	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #43448]	4-nitrophenyl beta-D-galactopyranoside ChEBI	+/-	hydrolysis
[Ref.: #43448]	adipate ChEBI	-	assimilation
[Ref.: #43448]	alpha-cyclodextrin ChEBI	+	assimilation
[Ref.: #43448]	alpha-cyclodextrin ChEBI	+	carbon source
[Ref.: #43448]	alpha-D-glucose ChEBI	+	assimilation
[Ref.: #43448]	alpha-D-glucose ChEBI	+	carbon source
[Ref.: #43448]	amygdalin ChEBI	-	builds acid from
[Ref.: #43448]	arabinose ChEBI	-	assimilation
[Ref.: #43448]	arbutin ChEBI	-	builds acid from
[Ref.: #43448]	arginine ChEBI	-	hydrolysis
[Ref.: #43448]	cellobiose ChEBI	-	builds acid from
[Ref.: #43448]	cellobiose ChEBI	-	respiration
[Ref.: #43448]	D-fructose ChEBI	-	builds acid from
[Ref.: #43448]	D-fructose ChEBI	+	assimilation
[Ref.: #43448]	D-fructose ChEBI	+	carbon source
[Ref.: #43448]	D-galactose ChEBI	-	builds acid from
[Ref.: #43448]	D-galactose ChEBI	+	carbon source
[Ref.: #43448]	D-glucose ChEBI	-	builds acid from
[Ref.: #43448]	D-glucose 6-phosphate ChEBI	-	respiration
[Ref.: #43448]	D-mannose ChEBI	-	builds acid from
[Ref.: #43448]	D-mannose ChEBI	+	assimilation
[Ref.: #43448]	D-mannose ChEBI	+	carbon source
[Ref.: #43448]	decanoate ChEBI	-	assimilation
[Ref.: #43448]	dextran ChEBI	-	respiration
[Ref.: #43448]	esculin ChEBI	+	hydrolysis
[Ref.: #43448]	esculin ferric citrate	+	builds acid from
[Ref.: #43448]	gelatin ChEBI	+	hydrolysis
[Ref.: #43448]	gentiobiose ChEBI	-	builds acid from
[Ref.: #43448]	gentiobiose ChEBI	+	assimilation
[Ref.: #43448]	gentiobiose ChEBI	+	carbon source
[Ref.: #43448]	glucose ChEBI	-	assimilation
[Ref.: #43448]	glucose 1-phosphate ChEBI	-	respiration
[Ref.: #43448]	glycerol ChEBI	-	respiration
[Ref.: #43448]	glycerol 1-phosphate ChEBI	-	respiration
[Ref.: #43448]	glycogen ChEBI	-	respiration
[Ref.: #43448]	glycyl-l-glutamate ChEBI	-	respiration
[Ref.: #43448]	indole ChEBI	-	reduction
[Ref.: #43448]	inulin ChEBI	-	builds acid from
[Ref.: #43448]	L-arabinose ChEBI	-	builds acid from
[Ref.: #43448]	L-glutamate ChEBI	-	respiration
[Ref.: #43448]	L-proline ChEBI	-	respiration
[Ref.: #43448]	L-serine ChEBI	-	respiration
[Ref.: #43448]	L-threonine ChEBI	-	respiration
[Ref.: #43448]	lactose ChEBI	-	builds acid from
[Ref.: #43448]	lactose ChEBI	+	assimilation
[Ref.: #43448]	lactose ChEBI	+	carbon source
[Ref.: #43448]	lactulose ChEBI	+	carbon source
[Ref.: #43448]	lactulose ChEBI	+	respiration
[Ref.: #43448]	malate ChEBI	-	assimilation
[Ref.: #43448]	maltose ChEBI	-	assimilation
[Ref.: #43448]	maltose ChEBI	-	builds acid from
[Ref.: #43448]	maltose ChEBI	+	assimilation
[Ref.: #43448]	maltose ChEBI	+	carbon source
[Ref.: #43448]	mannitol ChEBI	-	assimilation
[Ref.: #43448]	mannose ChEBI	-	assimilation
[Ref.: #43448]	melezitose ChEBI	-	builds acid from
[Ref.: #43448]	melibiose ChEBI	-	builds acid from
[Ref.: #43448]	melibiose ChEBI	+	carbon source
[Ref.: #43448]	melibiose ChEBI	+	respiration
[Ref.: #43448]	methyl D-glucoside ChEBI	-	respiration
[Ref.: #43448]	methyl pyruvate ChEBI	-	respiration
[Ref.: #43448]	N-acetylglucosamine ChEBI	-	assimilation
[Ref.: #43448]	N-acetylglucosamine ChEBI	-	builds acid from
[Ref.: #43448]	N-acetylglucosamine ChEBI	-	respiration
[Ref.: #43448]	nitrate ChEBI	-	reduction
[Ref.: #43448]	phenylacetate ChEBI	-	assimilation
[Ref.: #43448]	potassium gluconate ChEBI	-	assimilation
[Ref.: #43448]	raffinose ChEBI	+	carbon source
[Ref.: #43448]	raffinose ChEBI	+	respiration
[Ref.: #43448]	salicin ChEBI	-	builds acid from
[Ref.: #43448]	sodium citrate ChEBI	-	assimilation
[Ref.: #43448]	sucrose ChEBI	-	builds acid from
[Ref.: #43448]	sucrose ChEBI	+	assimilation
[Ref.: #43448]	sucrose ChEBI	+	carbon source
[Ref.: #43448]	trehalose ChEBI	-	builds acid from
[Ref.: #43448]	trehalose ChEBI	+	assimilation
[Ref.: #43448]	trehalose ChEBI	+	carbon source
[Ref.: #43448]	turanose ChEBI	-	builds acid from
[Ref.: #43448]	turanose ChEBI	+	assimilation
[Ref.: #43448]	turanose ChEBI	+	carbon source
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #43448]		indole ChEBI	no

	Enzyme	Enzyme activity	EC number
[Ref.: #43448]	acid phosphatase	+	3.1.3.2
[Ref.: #43448]	alkaline phosphatase	+	3.1.3.1
[Ref.: #43448]	alpha-chymotrypsin	-	3.4.21.1
[Ref.: #43448]	alpha-fucosidase	+	3.2.1.51
[Ref.: #43448]	alpha-galactosidase	+	3.2.1.22
[Ref.: #43448]	alpha-glucosidase	+	3.2.1.20
[Ref.: #43448]	alpha-mannosidase	+/-	3.2.1.24
[Ref.: #43448]	beta-galactosidase	+	3.2.1.23
[Ref.: #43448]	beta-glucosidase	+	3.2.1.21
[Ref.: #43448]	beta-glucuronidase	-	3.2.1.31
[Ref.: #43448]	catalase	+	1.11.1.6
[Ref.: #43448]	cystine arylamidase	+	3.4.11.3
[Ref.: #43448]	cytochrome oxidase	+	1.9.3.1
[Ref.: #43448]	esterase (C 4)	+
[Ref.: #43448]	esterase Lipase (C 8)	+
[Ref.: #43448]	leucine arylamidase	+	3.4.11.1
[Ref.: #43448]	lipase (C 14)	-
[Ref.: #43448]	N-acetyl-beta-glucosaminidase	+	3.2.1.52
[Ref.: #43448]	naphthol-AS-BI-phosphohydrolase	+
[Ref.: #43448]	trypsin	-	3.4.21.4
[Ref.: #43448]	urease	-	3.5.1.5
[Ref.: #43448]	valine arylamidase	+
	Only first 10 entries are displayed. Click here to see all.

Fatty acid profile

Metadata FA analysis

Reference

[Ref.: #43448]

Fatty acid	Percentage	ECL
C16:1ω7c / C16:1ω6c	39.6
C15:0 iso	29.1
C17:0 iso 3OH	7.9
C15:0 anteiso	6.1
C16:0	4.8
C16:1ω5c	3.1
C17:1 iso ω9c / C16:0 10-methyl	2.2
C15:0	1.6
C15:0 iso 3OH	1.3
C14:0	1.2
Unknown ECL 13.565	1.2	13565
C16:0 iso	1

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #43448]	Sample type/isolated from	sediment soil of crater lake, Baekrokdam, Hallasan, Jeju
[Ref.: #43448]	Geographic location (country and/or sea, region)	Baekrokdam, Hallasan, Jeju
[Ref.: #43448]	Country	Republic of Korea
[Ref.: #43448]	Country ISO 3 Code	KOR
[Ref.: #43448]	Continent	Asia

[Ref.: #67771]	Sample type/isolated from	From soil
[Ref.: #67771]	Geographic location (country and/or sea, region)	Jeju
[Ref.: #67771]	Country	Republic of Korea
[Ref.: #67771]	Country ISO 3 Code	KOR
[Ref.: #67771]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental	#Terrestrial	#Sediment
#Environmental	#Terrestrial	#Soil

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence LC160265 (>99% sequence identity) for Mucilaginibacter craterilacus subclade from Microbeatlas

Aquatic Samples	13
Soil Samples	322
Animal Samples	12
Plant Samples	24
Total Samples	371

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #43448]	16S rRNA gene sequence	LC160265		GenBank

[Ref.: #43448]

GC-content

44.4 mol%

high performance liquid chromatography (HPLC)

Availability in culture collections External links

[Ref.: #43448]

Culture collection no.

KCTC 52404, NRRL B-65396

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Mucilaginibacter craterilacus sp. nov., isolated from sediment soil of a crater lake.	Lee KC, Kim KK, Eom MK, Kim JS, Kim DS, Ko SH, Yang SH, Lee JS	Int J Syst Evol Microbiol	10.1099/ijsem.0.002043	2017	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#43448

Keun Chul Lee, Kwang Kyu Kim, Mi Kyung Eom, Jong-Shik Kim, Dae-Shin Kim, Suk-Hyung Ko, Seung-Hoon Yang, Jung-Sook Lee: Mucilaginibacter craterilacus sp. nov., isolated from sediment soil of a crater lake. IJSEM 67: 2891 - 2896 2017 ( DOI 10.1099/ijsem.0.002043 , PubMed 28820098 )

#67771 Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

* These data were automatically processed and therefore are not curated

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