Name: Cellulomonas gilvus ATCC 13127
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 140657

Type strain:

Species: Cellulomonas gilvus

Culture col. no.: ATCC 13127

NCBI tax ID(s): 593907 (strain), 11 (species)

Special Collections

Literature strains

Section

When using BacDive for research please cite our paper

Cellulomonas gilvus ATCC 13127 is a facultative anaerobe, Gram-positive, motile bacterium that was isolated from fresh bovine feces.

Gram-positive
motile
rod-shaped
facultative anaerobe
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	09-12-2024 (DD-MM-YYYY)
	Domain	*Bacteria*
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Micrococcales*
	Family	*Cellulomonadaceae*
	Genus	*Cellulomonas*
	Species	"Cellulomonas gilvus"
	Full Scientific Name (LPSN)	Cellulomonas gilvus Christopherson et al. 2013

Information on morphological and physiological properties Morphology

[Ref.: #43414]	Gram stain	positive
[Ref.: #125439]	Gram stain	positive Confidence in %96.6

[Ref.: #43414]	Cell length	1.5-3.75 µm

[Ref.: #43414]	Cell width	0.75-1.5 µm

[Ref.: #43414]	Cell shape	rod-shaped

[Ref.: #43414]	Motility	yes

[Ref.: #43414]	Colony color	opaque white to pale yellow
[Ref.: #43414]	Cultivation medium used	cellulose-yeast extract agar

Information on culture and growth conditions Culture and growth conditions

[Ref.: #43414]

Culture medium

YTP-2 medium

[Ref.: #43414]

Culture medium growth

[Ref.: #43414]

Culture medium composition

expand / minimize

[Ref.: #43414]

Culture medium

cellulose-yeast extract agar

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Culture medium growth

	pH	Kind of pH		pH
[Ref.: #43414]			optimum	7

Information on physiology and metabolism Physiology and metabolism

[Ref.: #43414]	Oxygen tolerance	facultative anaerobe
[Ref.: #125439]	Oxygen tolerance	obligate aerobe Confidence in %99.9

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #43414]	1,3-beta-d-glucan ChEBI	+	builds acid from
[Ref.: #43414]	3-O-methyl-D-glucose ChEBI	-	growth
[Ref.: #43414]	arabinan ChEBI	-	builds acid from
[Ref.: #43414]	arabinan ChEBI	+	growth
[Ref.: #43414]	arabinogalactan ChEBI	-	growth
[Ref.: #43414]	arabinoxylan ChEBI	+	builds acid from
[Ref.: #43414]	carboxymethylcellulose ChEBI	-	builds acid from
[Ref.: #43414]	carboxymethylcellulose ChEBI	+	growth
[Ref.: #43414]	cellobiose ChEBI	+	builds acid from
[Ref.: #43414]	cellulose ChEBI	-	builds acid from
[Ref.: #43414]	cellulose ChEBI	+	growth
[Ref.: #43414]	D-glucuronate ChEBI	-	growth
[Ref.: #43414]	fructose ChEBI	-	builds acid from
[Ref.: #43414]	fructose ChEBI	+	growth
[Ref.: #43414]	galactan ChEBI	+	builds acid from
[Ref.: #43414]	galactomannan ChEBI	+	builds acid from
[Ref.: #43414]	galactose ChEBI	-	builds acid from
[Ref.: #43414]	galactose ChEBI	+	growth
[Ref.: #43414]	glucomannan ChEBI	+	builds acid from
[Ref.: #43414]	glucose ChEBI	+	builds acid from
[Ref.: #43414]	lactose ChEBI	-	builds acid from
[Ref.: #43414]	lactose ChEBI	+	growth
[Ref.: #43414]	lichenin ChEBI	+	builds acid from
[Ref.: #43414]	maltose ChEBI	+	builds acid from
[Ref.: #43414]	mannose ChEBI	-	builds acid from
[Ref.: #43414]	mannose ChEBI	+	growth
[Ref.: #43414]	nitrate ChEBI	-	reduction
[Ref.: #43414]	polygalacturonic acid ChEBI	-	growth
[Ref.: #43414]	ribose ChEBI	-	growth
[Ref.: #43414]	starch ChEBI	-	builds acid from
[Ref.: #43414]	starch ChEBI	+	builds acid from
[Ref.: #43414]	starch ChEBI	+	growth
[Ref.: #43414]	sucrose ChEBI	+	builds acid from
[Ref.: #43414]	xyloglucan ChEBI	-	builds acid from
[Ref.: #43414]	xyloglucan ChEBI	+	growth
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #43414]		hydrogen sulfide ChEBI	no
[Ref.: #43414]		indole ChEBI	no

	Enzymes	Enzyme	Enzyme activity	EC number
[Ref.: #43414]		catalase	-	1.11.1.6

	Pathway	Enzyme coverage	Annotated reactions
	Pathway annotation	Computationally determined by
[Ref.: #66794]	cellulose degradation	100	5 of 5
[Ref.: #66794]	ppGpp biosynthesis	100	4 of 4
[Ref.: #66794]	vitamin K metabolism	100	5 of 5
[Ref.: #66794]	coenzyme A metabolism	100	4 of 4
[Ref.: #66794]	acetate fermentation	100	4 of 4
[Ref.: #66794]	palmitate biosynthesis	100	22 of 22
[Ref.: #66794]	cis-vaccenate biosynthesis	100	2 of 2
[Ref.: #66794]	glycogen metabolism	100	5 of 5
[Ref.: #66794]	cardiolipin biosynthesis	100	7 of 7
[Ref.: #66794]	threonine metabolism	100	10 of 10
[Ref.: #66794]	starch degradation	100	10 of 10
[Ref.: #66794]	teichoic acid biosynthesis	100	1 of 1
[Ref.: #66794]	phenylmercury acetate degradation	100	2 of 2
[Ref.: #66794]	anapleurotic synthesis of oxalacetate	100	1 of 1
[Ref.: #66794]	suberin monomers biosynthesis	100	2 of 2
[Ref.: #66794]	folate polyglutamylation	100	1 of 1
[Ref.: #66794]	UDP-GlcNAc biosynthesis	100	3 of 3
[Ref.: #66794]	adipate degradation	100	2 of 2
[Ref.: #66794]	formaldehyde oxidation	100	3 of 3
[Ref.: #66794]	CDP-diacylglycerol biosynthesis	100	2 of 2
[Ref.: #66794]	denitrification	100	2 of 2
[Ref.: #66794]	molybdenum cofactor biosynthesis	88.89	8 of 9
[Ref.: #66794]	chorismate metabolism	88.89	8 of 9
[Ref.: #66794]	C4 and CAM-carbon fixation	87.5	7 of 8
[Ref.: #66794]	isoleucine metabolism	87.5	7 of 8
[Ref.: #66794]	peptidoglycan biosynthesis	86.67	13 of 15
[Ref.: #66794]	photosynthesis	85.71	12 of 14
[Ref.: #66794]	heme metabolism	85.71	12 of 14
[Ref.: #66794]	NAD metabolism	83.33	15 of 18
[Ref.: #66794]	glycolate and glyoxylate degradation	83.33	5 of 6
[Ref.: #66794]	pentose phosphate pathway	81.82	9 of 11
[Ref.: #66794]	metabolism of disaccharids	81.82	9 of 11
[Ref.: #66794]	flavin biosynthesis	80	12 of 15
[Ref.: #66794]	methylglyoxal degradation	80	4 of 5
[Ref.: #66794]	lipoate biosynthesis	80	4 of 5
[Ref.: #66794]	factor 420 biosynthesis	80	4 of 5
[Ref.: #66794]	metabolism of amino sugars and derivatives	80	4 of 5
[Ref.: #66794]	valine metabolism	77.78	7 of 9
[Ref.: #66794]	pyrimidine metabolism	77.78	35 of 45
[Ref.: #66794]	CO2 fixation in Crenarchaeota	77.78	7 of 9
[Ref.: #66794]	serine metabolism	77.78	7 of 9
[Ref.: #66794]	phenylalanine metabolism	76.92	10 of 13
[Ref.: #66794]	glycolysis	76.47	13 of 17
[Ref.: #66794]	alanine metabolism	75.86	22 of 29
[Ref.: #66794]	sulfopterin metabolism	75	3 of 4
[Ref.: #66794]	glycogen biosynthesis	75	3 of 4
[Ref.: #66794]	6-hydroxymethyl-dihydropterin diphosphate biosynthesis	75	6 of 8
[Ref.: #66794]	ketogluconate metabolism	75	6 of 8
[Ref.: #66794]	gluconeogenesis	75	6 of 8
[Ref.: #66794]	glutamate and glutamine metabolism	75	21 of 28
[Ref.: #66794]	proline metabolism	72.73	8 of 11
[Ref.: #66794]	tetrahydrofolate metabolism	71.43	10 of 14
[Ref.: #66794]	reductive acetyl coenzyme A pathway	71.43	5 of 7
[Ref.: #66794]	purine metabolism	71.28	67 of 94
[Ref.: #66794]	methane metabolism	66.67	2 of 3
[Ref.: #66794]	cyanate degradation	66.67	2 of 3
[Ref.: #66794]	octane oxidation	66.67	2 of 3
[Ref.: #66794]	L-lactaldehyde degradation	66.67	2 of 3
[Ref.: #66794]	acetyl CoA biosynthesis	66.67	2 of 3
[Ref.: #66794]	acetoin degradation	66.67	2 of 3
[Ref.: #66794]	aspartate and asparagine metabolism	66.67	6 of 9
[Ref.: #66794]	isoprenoid biosynthesis	65.38	17 of 26
[Ref.: #66794]	oxidative phosphorylation	64.84	59 of 91
[Ref.: #66794]	citric acid cycle	64.29	9 of 14
[Ref.: #66794]	d-xylose degradation	63.64	7 of 11
[Ref.: #66794]	non-pathway related	63.16	24 of 38
[Ref.: #66794]	methionine metabolism	61.54	16 of 26
[Ref.: #66794]	leucine metabolism	61.54	8 of 13
[Ref.: #66794]	propionate fermentation	60	6 of 10
[Ref.: #66794]	glutathione metabolism	57.14	8 of 14
[Ref.: #66794]	ubiquinone biosynthesis	57.14	4 of 7
[Ref.: #66794]	degradation of pentoses	57.14	16 of 28
[Ref.: #66794]	d-mannose degradation	55.56	5 of 9
[Ref.: #66794]	nitrate assimilation	55.56	5 of 9
[Ref.: #66794]	cysteine metabolism	55.56	10 of 18
[Ref.: #66794]	histidine metabolism	55.17	16 of 29
[Ref.: #66794]	lipid metabolism	54.84	17 of 31
[Ref.: #66794]	degradation of hexoses	50	9 of 18
[Ref.: #66794]	mannosylglycerate biosynthesis	50	1 of 2
[Ref.: #66794]	pantothenate biosynthesis	50	3 of 6
[Ref.: #66794]	glycine metabolism	50	5 of 10
[Ref.: #66794]	ethanol fermentation	50	1 of 2
[Ref.: #66794]	cyclohexanol degradation	50	2 of 4
[Ref.: #66794]	butanoate fermentation	50	2 of 4
[Ref.: #66794]	arginine metabolism	50	12 of 24
[Ref.: #66794]	lysine metabolism	47.62	20 of 42
[Ref.: #66794]	tryptophan metabolism	47.37	18 of 38
[Ref.: #66794]	sulfate reduction	46.15	6 of 13
[Ref.: #66794]	urea cycle	46.15	6 of 13
[Ref.: #66794]	lipid A biosynthesis	44.44	4 of 9
[Ref.: #66794]	propanol degradation	42.86	3 of 7
[Ref.: #66794]	tyrosine metabolism	42.86	6 of 14
[Ref.: #66794]	carotenoid biosynthesis	40.91	9 of 22
[Ref.: #66794]	coenzyme M biosynthesis	40	4 of 10
[Ref.: #66794]	Entner Doudoroff pathway	40	4 of 10
[Ref.: #66794]	arachidonate biosynthesis	40	2 of 5
[Ref.: #66794]	androgen and estrogen metabolism	37.5	6 of 16
[Ref.: #66794]	degradation of aromatic, nitrogen containing compounds	33.33	4 of 12
[Ref.: #66794]	selenocysteine biosynthesis	33.33	2 of 6
[Ref.: #66794]	enterobactin biosynthesis	33.33	1 of 3
[Ref.: #66794]	(5R)-carbapenem carboxylate biosynthesis	33.33	1 of 3
[Ref.: #66794]	IAA biosynthesis	33.33	1 of 3
[Ref.: #66794]	sphingosine metabolism	33.33	2 of 6
[Ref.: #66794]	sulfoquinovose degradation	33.33	1 of 3
[Ref.: #66794]	degradation of sugar alcohols	31.25	5 of 16
[Ref.: #66794]	vitamin B1 metabolism	30.77	4 of 13
[Ref.: #66794]	myo-inositol biosynthesis	30	3 of 10
[Ref.: #66794]	mevalonate metabolism	28.57	2 of 7
[Ref.: #66794]	dolichyl-diphosphooligosaccharide biosynthesis	27.27	3 of 11
[Ref.: #66794]	3-phenylpropionate degradation	26.67	4 of 15
[Ref.: #66794]	lactate fermentation	25	1 of 4
[Ref.: #66794]	toluene degradation	25	1 of 4
[Ref.: #66794]	carnitine metabolism	25	2 of 8
[Ref.: #66794]	dTDPLrhamnose biosynthesis	25	2 of 8
[Ref.: #66794]	CMP-KDO biosynthesis	25	1 of 4
[Ref.: #66794]	alginate biosynthesis	25	1 of 4
[Ref.: #66794]	phosphatidylethanolamine bioynthesis	23.08	3 of 13
[Ref.: #66794]	phenylpropanoid biosynthesis	23.08	3 of 13
[Ref.: #66794]	ascorbate metabolism	22.73	5 of 22
		Only first 10 entries are displayed. Click here to see all.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #43414]	Sample type/isolated from	fresh bovine feces
* marker position based on {}

Isolation sources categories

#Host	#Mammals	#Bovinae (Cow, Cattle)
#Host Body Product	#Gastrointestinal tract	#Feces (Stool)

What are isolation sources categories?

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Cellulomonas gilvus ATCC 13127	GCA_000218545	complete	GenBank ENA	593907 tax ID	*
[Ref.: #66792]	[Cellvibrio] gilvus ATCC 13127	593907.5	complete	PATRIC	593907 tax ID	*
[Ref.: #66792]	Cellulomonas gilvus ATCC 13127	2505679016	complete	JGI IMG/M	593907 tax ID	*

[Ref.: #43414]

GC-content

74.5 mol%

Data predicted using genome information as a basis Genome-based predictions

	Model	Trait	Prediction	Confidence in %	In training data
	Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Cellulomonas gilvus ATCC 13127 ATCC 13127 NCBI: GCA_000218545.1
[Ref.: #125438]	gram-positive	gram-positiveⓘ	yes	88.394	yes
[Ref.: #125438]	anaerobic	anaerobicⓘ	no	93.767	no
[Ref.: #125438]	aerobic	aerobicⓘ	yes	63.208	no
[Ref.: #125438]	spore-forming	spore-formingⓘ	no	66.74	no
[Ref.: #125438]	thermophile	thermophilicⓘ	no	95.583	no
[Ref.: #125438]	motile2+	flagellatedⓘ	no	65.371	no

	Model	Trait	Prediction	Confidence in %
	Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Cellulomonas gilvus ATCC 13127 NCBI: GCA_000218545
[Ref.: #125439]	BacteriaNet	spore_formationⓘ	no	73.2
[Ref.: #125439]	BacteriaNet	motilityⓘ	no	59
[Ref.: #125439]	BacteriaNet	gram_stainⓘ	positive	96.6
[Ref.: #125439]	BacteriaNet	oxygen_toleranceⓘ	obligate aerobe	99.9

Availability in culture collections External links

[Ref.: #43414]

Culture collection no.

ATCC 13127

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	The genome sequences of Cellulomonas fimi and "Cellvibrio gilvus" reveal the cellulolytic strategies of two facultative anaerobes, transfer of "Cellvibrio gilvus" to the genus Cellulomonas, and proposal of Cellulomonas gilvus sp. nov.	Christopherson MR, Suen G, Bramhacharya S, Jewell KA, Aylward FO, Mead D, Brumm PJ	PLoS One	10.1371/journal.pone.0053954	2013	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#43414

Melissa R. Christopherson, Garret Suen, Shanti Bramhacharya, Kelsea A. Jewell, Frank O. Aylward, David Mead, Phillip J. Brumm: The Genome Sequences of Cellulomonas fimi and ''Cellvibrio gilvus'' Reveal the Cellulolytic Strategies of Two Facultative Anaerobes, Transfer of ''Cellvibrio gilvus'' to the Genus Cellulomonas, and Proposal of Cellulomonas gilvus sp. nov. PLoS ONE 8: 2013 ( DOI 10.1371/journal.pone.0053954 , PubMed 23342046 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#66794

Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg: BRENDA, the ELIXIR core data resource in 2021: new developments and updates. Nucleic Acids Res. 49: D498 - D508 2020 ( DOI 10.1093/nar/gkaa1025 , PubMed 33211880 )

#125438

Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )

#125439

Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .

* These data were automatically processed and therefore are not curated

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Cellulomonas gilvus ATCC 13127 ATCC 13127

Cellulomonas gilvus ATCC 13127

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