Strain identifier
BacDive ID: 140657
Type strain: 
Species: Cellulomonas gilvus
NCBI tax ID(s): 593907 (strain), 11 (species)
version 8.1 (current version)
General
@ref: 43414
BacDive-ID: 140657
keywords: genome sequence, Bacteria, facultative anaerobe, Gram-positive, motile, rod-shaped
description: Cellulomonas gilvus ATCC 13127 is a facultative anaerobe, Gram-positive, motile bacterium that was isolated from fresh bovine feces.
NCBI tax id
| NCBI tax id | Matching level |
|---|---|
| 593907 | strain |
| 11 | species |
doi: 10.13145/bacdive140657.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Micrococcales
- family: Cellulomonadaceae
- genus: Cellulomonas
- species: Cellulomonas gilvus
- full scientific name: Cellulomonas gilvus Christopherson et al. 2013
@ref: 43414
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Micrococcales
family: Cellulomonadaceae
genus: Cellulomonas
species: Cellulomonas gilvus
type strain: yes
Morphology
cell morphology
| @ref | gram stain | cell length | cell width | cell shape | motility | confidence |
|---|---|---|---|---|---|---|
| 43414 | positive | 1.5-3.75 µm | 0.75-1.5 µm | rod-shaped | yes | |
| 69480 | positive | 100 |
colony morphology
- @ref: 43414
- colony color: opaque white to pale yellow
- medium used: cellulose-yeast extract agar
Culture and growth conditions
culture medium
| @ref | name | growth | composition |
|---|---|---|---|
| 43414 | YTP-2 medium | yes | per 1 litre: 2g yeast extract, 2g tryptone, 2g sodium pyruvate, 1g KCL, 2g KNO3, 2g Na2HPO4*7H2O, 0.1g MgSO4, 0.03g CaCL2, 2ml clarified tomato juice |
| 43414 | cellulose-yeast extract agar | yes |
culture pH
- @ref: 43414
- ability: positive
- type: optimum
- pH: 7
Physiology and metabolism
oxygen tolerance
- @ref: 43414
- oxygen tolerance: facultative anaerobe
spore formation
- @ref: 69480
- spore formation: no
- confidence: 99.984
metabolite utilization
| @ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
|---|---|---|---|---|
| 43414 | 37671 | 1,3-beta-d-glucan | + | builds acid from |
| 43414 | 73918 | 3-O-methyl-D-glucose | - | growth |
| 43414 | 22590 | arabinan | - | builds acid from |
| 43414 | 22590 | arabinan | + | growth |
| 43414 | 27569 | arabinogalactan | - | growth |
| 43414 | 28427 | arabinoxylan | + | builds acid from |
| 43414 | 85146 | carboxymethylcellulose | - | builds acid from |
| 43414 | 85146 | carboxymethylcellulose | + | growth |
| 43414 | 17057 | cellobiose | + | builds acid from |
| 43414 | 62968 | cellulose | - | builds acid from |
| 43414 | 62968 | cellulose | + | growth |
| 43414 | 15748 | D-glucuronate | - | growth |
| 43414 | 28757 | fructose | - | builds acid from |
| 43414 | 28757 | fructose | + | growth |
| 43414 | 37165 | galactan | + | builds acid from |
| 43414 | 27680 | galactomannan | + | builds acid from |
| 43414 | 28260 | galactose | - | builds acid from |
| 43414 | 28260 | galactose | + | growth |
| 43414 | 17020 | glucomannan | + | builds acid from |
| 43414 | 17234 | glucose | + | builds acid from |
| 43414 | 17716 | lactose | - | builds acid from |
| 43414 | 17716 | lactose | + | growth |
| 43414 | 6452 | lichenin | + | builds acid from |
| 43414 | 17306 | maltose | + | builds acid from |
| 43414 | 37684 | mannose | - | builds acid from |
| 43414 | 37684 | mannose | + | growth |
| 43414 | 17632 | nitrate | - | reduction |
| 43414 | 62969 | polygalacturonic acid | - | growth |
| 43414 | 33942 | ribose | - | growth |
| 43414 | 28017 | starch | - | builds acid from |
| 43414 | 28017 | starch | + | builds acid from |
| 43414 | 28017 | starch | + | growth |
| 43414 | 17992 | sucrose | + | builds acid from |
| 43414 | 18233 | xyloglucan | - | builds acid from |
| 43414 | 18233 | xyloglucan | + | growth |
metabolite production
| @ref | Chebi-ID | metabolite | production |
|---|---|---|---|
| 43414 | 16136 | hydrogen sulfide | no |
| 43414 | 35581 | indole | no |
enzymes
- @ref: 43414
- value: catalase
- activity: -
- ec: 1.11.1.6
Isolation, sampling and environmental information
isolation
- @ref: 43414
- sample type: fresh bovine feces
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Host | #Mammals | #Bovinae (Cow, Cattle) |
| #Host Body Product | #Gastrointestinal tract | #Feces (Stool) |
Sequence information
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Cellulomonas gilvus ATCC 13127 | GCA_000218545 | complete | ncbi | 593907 |
| 66792 | [Cellvibrio] gilvus ATCC 13127 | 593907.5 | complete | patric | 593907 |
| 66792 | Cellulomonas gilvus ATCC 13127 | 2505679016 | complete | img | 593907 |
GC content
- @ref: 43414
- GC-content: 74.5
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| spore-forming | yes | 89 | no |
| motile | yes | 79.778 | no |
| flagellated | no | 88.108 | no |
| gram-positive | yes | 92.088 | yes |
| anaerobic | no | 98.683 | yes |
| aerobic | yes | 75.851 | yes |
| halophile | no | 93.785 | no |
| spore-forming | no | 90.444 | no |
| thermophile | no | 98.31 | no |
| glucose-util | yes | 81.794 | no |
| glucose-ferment | no | 63.97 | no |
External links
@ref: 43414
culture collection no.: ATCC 13127
literature
- topic: Phylogeny
- Pubmed-ID: 23342046
- title: The genome sequences of Cellulomonas fimi and "Cellvibrio gilvus" reveal the cellulolytic strategies of two facultative anaerobes, transfer of "Cellvibrio gilvus" to the genus Cellulomonas, and proposal of Cellulomonas gilvus sp. nov.
- authors: Christopherson MR, Suen G, Bramhacharya S, Jewell KA, Aylward FO, Mead D, Brumm PJ
- journal: PLoS One
- DOI: 10.1371/journal.pone.0053954
- year: 2013
- mesh: Cellulomonas/classification/*genetics/*metabolism, Cellulose/*metabolism, Cellvibrio/classification/*genetics/*metabolism, Energy Metabolism/genetics, Fermentation/genetics, Genome, Bacterial/*genetics, Hydrolysis, Phylogeny, Polysaccharides/metabolism, Sequence Homology, Nucleic Acid
- topic2: Metabolism
Reference
| @id | authors | title | doi/url | journal | pubmed |
|---|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | ||
| 43414 | Melissa R. Christopherson, Garret Suen, Shanti Bramhacharya, Kelsea A. Jewell, Frank O. Aylward, David Mead, Phillip J. Brumm | The Genome Sequences of Cellulomonas fimi and ''Cellvibrio gilvus'' Reveal the Cellulolytic Strategies of Two Facultative Anaerobes, Transfer of ''Cellvibrio gilvus'' to the Genus Cellulomonas, and Proposal of Cellulomonas gilvus sp. nov | 10.1371/journal.pone.0053954 | PLoS ONE 8: - 2013 | 23342046 |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | ||
| 66794 | Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg | BRENDA, the ELIXIR core data resource in 2021: new developments and updates | 10.1093/nar/gkaa1025 | Nucleic Acids Res. 49: D498-D508 2020 | 33211880 |
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes |