Name: Cellvibrio japonicus Ueda107
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 140658

Type strain:

Species: Cellvibrio japonicus

Strain Designation: Ueda107

Culture col. no.: NCDO 2697, NCIMB 10462, DSM 16015

Strain history: <- NCIMB <- K. Nisizawa, Tokyo Kyoiku University, Botanical Institute <- K. Ueda; Ueda107

NCBI tax ID(s): 155077 (species)

SI-ID 60061

NCIMB 10462, NCDO2697, KCTC 1397, DSM 16015

Special Collections

Literature strains

Section

When using BacDive for research please cite our paper

Cellvibrio japonicus Ueda107 is an aerobe, chemoorganotroph, Gram-negative bacterium that was isolated from field soil.

Gram-negative
motile
rod-shaped
aerobe
chemoorganotroph
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	09-12-2024 (DD-MM-YYYY)
	Domain	*Bacteria*
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Cellvibrionales*
	Family	*Cellvibrionaceae*
	Genus	*Cellvibrio*
	Species	**Cellvibrio japonicus**
	Full Scientific Name (LPSN)	Cellvibrio japonicus Humphry et al. 2003

Information on morphological and physiological properties Morphology

[Ref.: #43405]	Gram stain	negative

[Ref.: #43405]	Cell length	1.2-3 µm

[Ref.: #43405]	Cell width	0.5-0.7 µm

[Ref.: #43405]	Cell shape	rod-shaped

[Ref.: #43405]	Motility	yes

[Ref.: #43405]	Flagellum arrangement	polar

[Ref.: #43405]	Colony color	cream-coloured
[Ref.: #43405]	Cultivation medium used	TSA

Information on culture and growth conditions Culture and growth conditions

[Ref.: #43405]

Culture medium

Trypticase Soy Agar (TSA)

[Ref.: #43405]

Culture medium growth

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Culture medium

PYEA

[Ref.: #43405]

Culture medium growth

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Culture medium

Medium B

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Culture medium growth

	Temperatures	Kind of temperature		Temperature
[Ref.: #43405]			growth	17-47 °C

	pH	Kind of pH		pH
[Ref.: #43405]			growth	6-9

Information on physiology and metabolism Physiology and metabolism

[Ref.: #43405]

Oxygen tolerance

aerobe

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Nutrition type

chemoorganotroph

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Ability of spore formation

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #43405]		NaCl		growth	2	%
[Ref.: #43405]		NaCl	no	growth	4	%

[Ref.: #43405]

Observation

could not tolerate 0.0075% KCN

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #43405]	2-naphthyl dihydrogen phosphate ChEBI	+	hydrolysis
[Ref.: #43405]	4-nitrophenyl N-acetyl-beta-D-glucosaminide ChEBI	+	hydrolysis
[Ref.: #43405]	acetate ChEBI	-	growth
[Ref.: #43405]	adipate ChEBI	-	growth
[Ref.: #43405]	agar ChEBI	-	growth
[Ref.: #43405]	amylopectin ChEBI	+	growth
[Ref.: #43405]	amylopectin ChEBI	+	carbon source
[Ref.: #43405]	amylopectin ChEBI	+	energy source
[Ref.: #43405]	amylose ChEBI	+	assimilation
[Ref.: #43405]	arabinose ChEBI	-	builds acid from
[Ref.: #43405]	arabinose ChEBI	+	growth
[Ref.: #43405]	arabinose ChEBI	+	carbon source
[Ref.: #43405]	arabinose ChEBI	+	energy source
[Ref.: #43405]	carboxymethylcellulose ChEBI	+	growth
[Ref.: #43405]	carboxymethylcellulose ChEBI	+	carbon source
[Ref.: #43405]	carboxymethylcellulose ChEBI	+	energy source
[Ref.: #43405]	casein	-	growth
[Ref.: #43405]	casein hydrolysate	-	assimilation
[Ref.: #43405]	cellobiose ChEBI	+	builds acid from
[Ref.: #43405]	cellulose ChEBI	-	builds acid from
[Ref.: #43384]	cellulose ChEBI	+	degradation
[Ref.: #43405]	chitin ChEBI	+	assimilation
[Ref.: #43405]	citrate ChEBI	-	growth
[Ref.: #43405]	decanoate ChEBI	-	growth
[Ref.: #43405]	dextran ChEBI	-	growth
[Ref.: #43405]	dextrin ChEBI	-	builds acid from
[Ref.: #43405]	esculin ChEBI	+	hydrolysis
[Ref.: #43405]	fructose ChEBI	-	builds acid from
[Ref.: #43405]	fructose ChEBI	+	assimilation
[Ref.: #43405]	galactose ChEBI	-	builds acid from
[Ref.: #43405]	galactose ChEBI	+	growth
[Ref.: #43405]	galactose ChEBI	+	carbon source
[Ref.: #43405]	galactose ChEBI	+	energy source
[Ref.: #43405]	gelatin ChEBI	-	hydrolysis
[Ref.: #43405]	gelatin ChEBI	-	growth
[Ref.: #43405]	gluconate ChEBI	-	growth
[Ref.: #43405]	glucose ChEBI	-	builds acid from
[Ref.: #43405]	glucose ChEBI	+	growth
[Ref.: #43405]	glucose ChEBI	+	carbon source
[Ref.: #43405]	glucose ChEBI	+	energy source
[Ref.: #43405]	glycerol ChEBI	-	builds acid from
[Ref.: #43405]	L-glutamate ChEBI	-	growth
[Ref.: #43405]	L-leucylglycine 2-naphthylamide ChEBI	+	hydrolysis
[Ref.: #43405]	lactate ChEBI	-	growth
[Ref.: #43405]	lactose ChEBI	-	builds acid from
[Ref.: #43405]	lactose ChEBI	+	growth
[Ref.: #43405]	lactose ChEBI	+	carbon source
[Ref.: #43405]	lactose ChEBI	+	energy source
[Ref.: #43405]	malate ChEBI	-	growth
[Ref.: #43405]	maltose ChEBI	-	builds acid from
[Ref.: #43405]	maltose ChEBI	+	growth
[Ref.: #43405]	maltose ChEBI	+	carbon source
[Ref.: #43405]	maltose ChEBI	+	energy source
[Ref.: #43384]	mannan ChEBI	+	degradation
[Ref.: #43405]	mannitol ChEBI	-	growth
[Ref.: #43405]	mannitol ChEBI	+	builds acid from
[Ref.: #43405]	mannose ChEBI	-	builds acid from
[Ref.: #43405]	mannose ChEBI	-	assimilation
[Ref.: #43405]	melezitose ChEBI	-	builds acid from
[Ref.: #43405]	myo-inositol ChEBI	-	growth
[Ref.: #43405]	N-acetylglucosamine ChEBI	-	assimilation
[Ref.: #43405]	nitrate ChEBI	+	reduction
[Ref.: #43405]	pectin ChEBI	+	growth
[Ref.: #43405]	pectin ChEBI	+	carbon source
[Ref.: #43405]	pectin ChEBI	+	energy source
[Ref.: #43405]	phenylacetate ChEBI	-	growth
[Ref.: #43405]	pyruvate ChEBI	-	growth
[Ref.: #43405]	raffinose ChEBI	-	builds acid from
[Ref.: #43405]	raffinose ChEBI	-	assimilation
[Ref.: #43405]	ribose ChEBI	-	growth
[Ref.: #43405]	sorbitol ChEBI	-	builds acid from
[Ref.: #43405]	starch ChEBI	-	builds acid from
[Ref.: #43405]	starch ChEBI	+	growth
[Ref.: #43405]	starch ChEBI	+	carbon source
[Ref.: #43405]	starch ChEBI	+	energy source
[Ref.: #43405]	succinamate ChEBI	-	growth
[Ref.: #43405]	sucrose ChEBI	-	builds acid from
[Ref.: #43405]	sucrose ChEBI	-	assimilation
[Ref.: #43405]	trehalose ChEBI	+	growth
[Ref.: #43405]	trehalose ChEBI	+	carbon source
[Ref.: #43405]	trehalose ChEBI	+	energy source
[Ref.: #43405]	tryptone	+	growth
[Ref.: #43405]	tryptone	+	carbon source
[Ref.: #43405]	tryptone	+	energy source
[Ref.: #43405]	tween 80 ChEBI	-	growth
[Ref.: #43384]	xylan ChEBI	+	degradation
[Ref.: #43405]	xylan ChEBI	+	growth
[Ref.: #43405]	xylan ChEBI	+	carbon source
[Ref.: #43405]	xylan ChEBI	+	energy source
[Ref.: #43405]	xylose ChEBI	-	builds acid from
[Ref.: #43405]	xylose ChEBI	+	growth
[Ref.: #43405]	xylose ChEBI	+	carbon source
[Ref.: #43405]	xylose ChEBI	+	energy source
	Only first 10 entries are displayed. Click here to see all.

	Metabolite	Antibiotic sensitivity	Concentration		Antibiotic resistance	Concentration
[Ref.: #43405]	ampicillin ChEBI				yes	10	µg/mL
[Ref.: #43405]	cephalothin ChEBI	no	5	µg (disc)
[Ref.: #43405]	chloramphenicol ChEBI	yes	10	µg/mL
[Ref.: #43405]	erythromycin ChEBI	yes	10	µg/mL
[Ref.: #43405]	gentamicin ChEBI	yes	10	µg/mL
[Ref.: #43405]	kanamycin ChEBI	yes	10	µg/mL
[Ref.: #43405]	neomycin ChEBI				yes	10	µg/mL
[Ref.: #43405]	novobiocin ChEBI	yes	5	µg (disc)
[Ref.: #43405]	rifampicin ChEBI	yes	10	µg/mL
[Ref.: #43405]	streptomycin ChEBI				yes	10	µg/mL
[Ref.: #43405]	sulfamethoxazole ChEBI	yes	25	µg (disc)
[Ref.: #43405]	tetracycline ChEBI	yes	10	µg/mL
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #43405]		indole ChEBI	no

	Enzyme	Enzyme activity	EC number
[Ref.: #43405]	arginine dihydrolase	-	3.5.3.6
[Ref.: #43405]	beta-galactosidase	+	3.2.1.23
[Ref.: #43405]	catalase	+	1.11.1.6
[Ref.: #43405]	cellulase	+	3.2.1.4
[Ref.: #43405]	cytochrome oxidase	+	1.9.3.1
[Ref.: #43405]	endo-1,4-beta-xylanase	+	3.2.1.8
[Ref.: #43405]	esterase	+
[Ref.: #43405]	naphthol-AS-BI-phosphohydrolase	+
[Ref.: #43405]	urease	-	3.5.1.5

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #43384]	Sample type/isolated from	field soil
[Ref.: #43384]	Geographic location (country and/or sea, region)	Saitama-ken
[Ref.: #43384]	Country	Japan
[Ref.: #43384]	Country ISO 3 Code	JPN
[Ref.: #43384]	Continent	Asia
[Ref.: #43384]	Geographic location	35.0000°/139.0000°
[Ref.: #43384]	Isolation date	1948

[Ref.: #6153]	Sample type/isolated from	Field soil
[Ref.: #6153]	Geographic location (country and/or sea, region)	Saitama-ken
[Ref.: #6153]	Country	Japan
[Ref.: #6153]	Country ISO 3 Code	JPN
[Ref.: #6153]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental	#Terrestrial	#Soil
#Engineered	#Agriculture	#Field

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #6153]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #124043]	Pseudomonas cellulosa 16S ribosomal RNA gene, partial sequence.	AF452103	1509	GenBank ENA	155077 tax ID	*

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GC-content

53.3 mol%

high performance liquid chromatography (HPLC)

Availability in culture collections External links

[Ref.: #43405]

Culture collection no.

NCDO 2697, NCIMB 10462, DSM 16015

[Ref.: #96769]

SI-ID 60061

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Reclassification of 'Pseudomonas fluorescens subsp. cellulosa' NCIMB 10462 (Ueda et al. 1952) as Cellvibrio japonicus sp. nov. and revival of Cellvibrio vulgaris sp. nov., nom. rev. and Cellvibrio fulvus sp. nov., nom. rev.	Humphry DR, Black GW, Cummings SP	Int J Syst Evol Microbiol	10.1099/ijs.0.02271-0	2003	*

References

#6153

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 16015

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#43384

Robert T. DeBoy, Emmanuel F. Mongodin, Derrick E. Fouts, Louise E. Tailford, Hoda Khouri, Joanne B. Emerson, Yasmin Mohamoud, Kisha Watkins, Bernard Henrissat, Harry J. Gilbert, Karen E. Nelson: Insights into Plant Cell Wall Degradation from the Genome Sequence of the Soil Bacterium Cellvibrio japonicus. J. Bacteriol. 190: 5455 - 5463 2008 ( DOI 10.1099/ijs.0.02271-0 , PubMed 12710603 )

#43405

David R. Humphry, Gary W. Black, Stephen P. Cummings: Reclassification of Pseudomonas fluorescens subsp. cellulosa' NCIMB 10462 (Ueda et al. 1952) as Cellvibrio japonicus sp. nov. and revival of Cellvibrio vulgaris sp. nov., nom. rev. and Cellvibrio fulvus sp. nov., nom. rev.. IJSEM 53: 393 - 400 2003 ( DOI 10.1128/JB.01701-07 , PubMed 18556790 )

#96769

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID60061.1 )

#124043

Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .

* These data were automatically processed and therefore are not curated

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