Name: Microbacterium lacusdiani DSM 29188
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 140331

Type strain:

Species: Microbacterium lacusdiani

Culture col. no.: DSM 29188, KCTC 29655, JXJ CY 01, JCM 30286

Strain history: W.-J. Li; Yunnan Inst. of Microbiol., Yunnan Univ., China; JXJ CY 01.

NCBI tax ID(s): 1688485 (species)

SI-ID 401298

DSM 29188

Section

Microbacterium lacusdiani DSM 29188 is a mesophilic bacterium that was isolated from mucilaginous sheath of Microcystis aeruginosa.

mesophilic
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Micrococcales*
	Family	*Microbacteriaceae*
	Genus	*Microbacterium*
	Species	**Microbacterium lacusdiani**
	Full Scientific Name (LPSN)	Microbacterium lacusdiani Zhang et al. 2017

Information on culture and growth conditions Culture and growth conditions

[Ref.: #42938]

Culture medium

GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)

[Ref.: #42938]

Culture medium growth

[Ref.: #42938]

Culture medium link

Medium recipe at MediaDive

[Ref.: #42938]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #42938]			growth	28 °C
[Ref.: #67770]			growth	28 °C

[Ref.: #42938]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #67770]

Observation

quinones: MK-11, MK-12

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #42938]	Sample type/isolated from	mucilaginous sheath of Microcystis aeruginosa
[Ref.: #42938]	Host species	Microcystis aeruginosa
[Ref.: #42938]	Geographic location (country and/or sea, region)	Lake Dianchi
[Ref.: #42938]	Country	China
[Ref.: #42938]	Country ISO 3 Code	CHN
[Ref.: #42938]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Mucilaginous sheath of Microcystis aeruginosa FACHB-905, collected from Lake Dianchi
[Ref.: #67770]	Host species	Microcystis aeruginosa
[Ref.: #67770]	Geographic location (country and/or sea, region)	Yunnan Province
[Ref.: #67770]	Country	China
[Ref.: #67770]	Country ISO 3 Code	CHN
[Ref.: #67770]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Host

#Microbial

#Bacteria

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence NR_149217 (>99% sequence identity) for Microbacterium lacusdiani from Microbeatlas

Aquatic Samples	86
Soil Samples	25
Animal Samples	70
Plant Samples	42
Total Samples	223

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #42938]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Microbacterium lacusdiani strain JXJ CY 01 16S ribosomal RNA gene, partial sequence	KP986565	1538	ENA	1688485 tax ID
[Ref.: #42938]	Microbacterium lacusdiani strain JXJ CY 01 16S ribosomal RNA, complete sequence	NR_149217	1523	GenBank	1688485 tax ID

[Ref.: #42938]	GC-content	70.4 mol%
[Ref.: #67770]	GC-content	70.4 mol%	high performance liquid chromatography (HPLC)

Availability in culture collections External links

[Ref.: #42938]

Culture collection no.

DSM 29188, KCTC 29655, JXJ CY 01, JCM 30286

[Ref.: #96634]

SI-ID 401298

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Microbacterium lacusdiani sp. nov., a phosphate-solubilizing novel actinobacterium isolated from mucilaginous sheath of Microcystis.	Zhang BH, Salam N, Cheng J, Li HQ, Yang JY, Zha DM, Guo QG, Li WJ	J Antibiot (Tokyo)	10.1038/ja.2016.125	2016	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#42938

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 29188

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#96634

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID401298.1 )

* These data were automatically processed and therefore are not curated

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