Strain identifier
BacDive ID: 140331
Type strain: 
Species: Microbacterium lacusdiani
Strain history: W.-J. Li; Yunnan Inst. of Microbiol., Yunnan Univ., China; JXJ CY 01.
NCBI tax ID(s): 1688485 (species)
version 8.1 (current version)
General
@ref: 42938
BacDive-ID: 140331
DSM-Number: 29188
keywords: 16S sequence, Bacteria, mesophilic
description: Microbacterium lacusdiani DSM 29188 is a mesophilic bacterium that was isolated from mucilaginous sheath of Microcystis aeruginosa.
NCBI tax id
- NCBI tax id: 1688485
- Matching level: species
strain history
| @ref | history |
|---|---|
| 42938 | <- W.-J. Li, YIM; JXJ CY01 <- B.-H. Zhang, Univ. Jiujiang |
| 67770 | W.-J. Li; Yunnan Inst. of Microbiol., Yunnan Univ., China; JXJ CY 01. |
doi: 10.13145/bacdive140331.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Micrococcales
- family: Microbacteriaceae
- genus: Microbacterium
- species: Microbacterium lacusdiani
- full scientific name: Microbacterium lacusdiani Zhang et al. 2017
@ref: 42938
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Actinomycetales
family: Microbacteriaceae
genus: Microbacterium
species: Microbacterium lacusdiani
full scientific name: Microbacterium lacusdiani Zhang et al. 2017
type strain: yes
Culture and growth conditions
culture medium
- @ref: 42938
- name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)
- growth: yes
- link: https://mediadive.dsmz.de/medium/65
- composition: Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 42938 | positive | growth | 28 | mesophilic |
| 67770 | positive | growth | 28 | mesophilic |
Physiology and metabolism
observation
- @ref: 67770
- observation: quinones: MK-11, MK-12
Isolation, sampling and environmental information
isolation
| @ref | sample type | host species | geographic location | country | origin.country | continent |
|---|---|---|---|---|---|---|
| 42938 | mucilaginous sheath of Microcystis aeruginosa | Microcystis aeruginosa | Lake Dianchi | China | CHN | Asia |
| 67770 | Mucilaginous sheath of Microcystis aeruginosa FACHB-905, collected from Lake Dianchi | Microcystis aeruginosa | Yunnan Province | China | CHN | Asia |
isolation source categories
- Cat1: #Host
- Cat2: #Microbial
- Cat3: #Bacteria
taxonmaps
- @ref: 69479
- File name: preview.99_4935.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_9;96_417;97_2954;98_3694;99_4935&stattab=map
- Last taxonomy: Microbacterium lacusdiani
- 16S sequence: NR_149217
- Sequence Identity:
- Total samples: 223
- soil counts: 25
- aquatic counts: 86
- animal counts: 70
- plant counts: 42
Safety information
risk assessment
- @ref: 42938
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
| @ref | description | accession | length | database | NCBI tax ID |
|---|---|---|---|---|---|
| 42938 | Microbacterium lacusdiani strain JXJ CY 01 16S ribosomal RNA, complete sequence | NR_149217 | 1523 | nuccore | 1688485 |
| 67770 | Microbacterium lacusdiani strain JXJ CY 01 16S ribosomal RNA gene, partial sequence | KP986565 | 1538 | ena | 1688485 |
GC content
| @ref | GC-content | method |
|---|---|---|
| 42938 | 70.4 | |
| 67770 | 70.4 | high performance liquid chromatography (HPLC) |
External links
@ref: 42938
culture collection no.: DSM 29188, KCTC 29655, JXJ CY 01, JCM 30286
straininfo link
- @ref: 96634
- straininfo: 401298
literature
- topic: Phylogeny
- Pubmed-ID: 27756912
- title: Microbacterium lacusdiani sp. nov., a phosphate-solubilizing novel actinobacterium isolated from mucilaginous sheath of Microcystis.
- authors: Zhang BH, Salam N, Cheng J, Li HQ, Yang JY, Zha DM, Guo QG, Li WJ
- journal: J Antibiot (Tokyo)
- DOI: 10.1038/ja.2016.125
- year: 2016
- mesh: Actinobacteria/*classification/*genetics/isolation & purification, Bacteriological Techniques, DNA, Bacterial/genetics, Microcystis/*physiology, Phylogeny, RNA, Bacterial/genetics, RNA, Ribosomal, 16S/genetics
- topic2: Enzymology
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 42938 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-29188 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 29188) | |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ | |
| 96634 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID401298.1 |