Name: Ureibacillus thermophilus HC148
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 1401

Type strain:

Species: Ureibacillus thermophilus

Strain Designation: HC148

Culture col. no.: DSM 17952, KACC 11362

Strain history: <- Soon-Wo Kwon, HC148

NCBI tax ID(s): 367743 (species)

SI-ID 406173

DSM 17952

Section

Ureibacillus thermophilus HC148 is a thermophilic, Gram-negative, motile bacterium that forms circular colonies and was isolated from livestock-manure compost.

colony-forming
Gram-negative
motile
rod-shaped
thermophilic
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Bacilli*
	Order	*Caryophanales*
	Family	*Caryophanaceae*
	Genus	*Ureibacillus*
	Species	**Ureibacillus thermophilus**
	Full Scientific Name (LPSN)	Ureibacillus thermophilus Weon et al. 2007

Information on morphological and physiological properties Morphology

[Ref.: #23026]	Gram stain	negative

[Ref.: #23026]	Cell length	2.5-3.5 µm

[Ref.: #23026]	Cell width	0.8-1.2 µm

[Ref.: #23026]	Cell shape	rod-shaped

[Ref.: #23026]	Motility	yes

[Ref.: #23026]	Colony color	light-brown
[Ref.: #23026]	Colony shape	circular
[Ref.: #23026]	Cultivation medium used	trypticase soy agar

[Ref.: #23026]	Cultivation medium used	nutrient agar (Oxoid)

Information on culture and growth conditions Culture and growth conditions

[Ref.: #7286]

Culture medium

CASO AGAR (MERCK 105458) (DSMZ Medium 220)

[Ref.: #7286]

Culture medium growth

[Ref.: #7286]

Culture medium link

Medium recipe at MediaDive

[Ref.: #7286]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #7286]	growth	50 °C
[Ref.: #23026]	growth	30.0-65.0 °C
[Ref.: #23026]	growth	35.0 °C
[Ref.: #23026]	growth	65.0 °C

[Ref.: #7286]	Temperature range	thermophilic
[Ref.: #23026]	Temperature range	mesophilic
[Ref.: #23026]	Temperature range	thermophilic

	pH	Kind of pH		pH
[Ref.: #23026]			growth	6.0-8.0

Information on physiology and metabolism Physiology and metabolism

[Ref.: #23026]

Ability of spore formation

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #23026]		NaCl		growth	<5.0	%

[Ref.: #7286]	Murein short key	A11.31
[Ref.: #7286]	Murein types	A4alpha L-Lys-D-Asp
[Ref.: #23026]	Murein short key	A11.31
[Ref.: #23026]	Murein types	A4alpha L-Lys-D-Asp

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #23026]	casein	-	hydrolysis
[Ref.: #23026]	D-glucose ChEBI	-	builds acid from
[Ref.: #23026]	D-mannitol ChEBI	-	builds acid from
[Ref.: #23026]	D-xylose ChEBI	-	builds acid from
[Ref.: #23026]	esculin ChEBI	+	hydrolysis
[Ref.: #23026]	gelatin ChEBI	-	hydrolysis
[Ref.: #23026]	glucose ChEBI	-	fermentation
[Ref.: #23026]	L-arabinose ChEBI	-	builds acid from
[Ref.: #23026]	nitrate ChEBI	-	reduction
[Ref.: #23026]	starch ChEBI	-	hydrolysis
[Ref.: #23026]	tyrosine ChEBI	+	hydrolysis
[Ref.: #23026]	urea ChEBI	-	hydrolysis
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #23026]		acetoin ChEBI	no
[Ref.: #23026]		indole ChEBI	no

	Physiological tests	Metabolite	Voges-Proskauer-test
[Ref.: #23026]		acetoin ChEBI	-

	Enzyme	Enzyme activity	EC number
[Ref.: #23026]	catalase	+	1.11.1.6
[Ref.: #23026]	cytochrome oxidase	+	1.9.3.1
[Ref.: #23026]	phenylalanine deaminase	+	4.3.1.5

	Pathway	Enzyme coverage	Annotated reactions
	Pathway annotation	Computationally determined by
[Ref.: #66794]	anapleurotic synthesis of oxalacetate	100	1 of 1
[Ref.: #66794]	coenzyme A metabolism	100	4 of 4
[Ref.: #66794]	gluconeogenesis	100	8 of 8
[Ref.: #66794]	ppGpp biosynthesis	100	4 of 4
[Ref.: #66794]	aspartate and asparagine metabolism	100	9 of 9
[Ref.: #66794]	vitamin K metabolism	100	5 of 5
[Ref.: #66794]	biotin biosynthesis	100	4 of 4
[Ref.: #66794]	suberin monomers biosynthesis	100	2 of 2
[Ref.: #66794]	UDP-GlcNAc biosynthesis	100	3 of 3
[Ref.: #66794]	adipate degradation	100	2 of 2
[Ref.: #66794]	formaldehyde oxidation	100	3 of 3
[Ref.: #66794]	CDP-diacylglycerol biosynthesis	100	2 of 2
[Ref.: #66794]	methylglyoxal degradation	100	5 of 5
[Ref.: #66794]	palmitate biosynthesis	100	22 of 22
[Ref.: #66794]	folate polyglutamylation	100	1 of 1
[Ref.: #66794]	kanosamine biosynthesis II	100	2 of 2
[Ref.: #66794]	vitamin B1 metabolism	100	13 of 13
[Ref.: #66794]	cis-vaccenate biosynthesis	100	2 of 2
[Ref.: #66794]	valine metabolism	100	9 of 9
[Ref.: #66794]	molybdenum cofactor biosynthesis	88.89	8 of 9
[Ref.: #66794]	serine metabolism	88.89	8 of 9
[Ref.: #66794]	chorismate metabolism	88.89	8 of 9
[Ref.: #66794]	C4 and CAM-carbon fixation	87.5	7 of 8
[Ref.: #66794]	peptidoglycan biosynthesis	86.67	13 of 15
[Ref.: #66794]	propanol degradation	85.71	6 of 7
[Ref.: #66794]	tetrahydrofolate metabolism	85.71	12 of 14
[Ref.: #66794]	leucine metabolism	84.62	11 of 13
[Ref.: #66794]	vitamin B12 metabolism	82.35	28 of 34
[Ref.: #66794]	cellulose degradation	80	4 of 5
[Ref.: #66794]	lipoate biosynthesis	80	4 of 5
[Ref.: #66794]	propionate fermentation	80	8 of 10
[Ref.: #66794]	3-chlorocatechol degradation	80	4 of 5
[Ref.: #66794]	citric acid cycle	78.57	11 of 14
[Ref.: #66794]	photosynthesis	78.57	11 of 14
[Ref.: #66794]	heme metabolism	78.57	11 of 14
[Ref.: #66794]	glutamate and glutamine metabolism	78.57	22 of 28
[Ref.: #66794]	CO2 fixation in Crenarchaeota	77.78	7 of 9
[Ref.: #66794]	acetate fermentation	75	3 of 4
[Ref.: #66794]	6-hydroxymethyl-dihydropterin diphosphate biosynthesis	75	6 of 8
[Ref.: #66794]	sulfopterin metabolism	75	3 of 4
[Ref.: #66794]	isoleucine metabolism	75	6 of 8
[Ref.: #66794]	flavin biosynthesis	73.33	11 of 15
[Ref.: #66794]	NAD metabolism	72.22	13 of 18
[Ref.: #66794]	cardiolipin biosynthesis	71.43	5 of 7
[Ref.: #66794]	reductive acetyl coenzyme A pathway	71.43	5 of 7
[Ref.: #66794]	purine metabolism	71.28	67 of 94
[Ref.: #66794]	starch degradation	70	7 of 10
[Ref.: #66794]	threonine metabolism	70	7 of 10
[Ref.: #66794]	phenylalanine metabolism	69.23	9 of 13
[Ref.: #66794]	alanine metabolism	68.97	20 of 29
[Ref.: #66794]	pyrimidine metabolism	66.67	30 of 45
[Ref.: #66794]	cyanate degradation	66.67	2 of 3
[Ref.: #66794]	acetoin degradation	66.67	2 of 3
[Ref.: #66794]	acetyl CoA biosynthesis	66.67	2 of 3
[Ref.: #66794]	L-lactaldehyde degradation	66.67	2 of 3
[Ref.: #66794]	enterobactin biosynthesis	66.67	2 of 3
[Ref.: #66794]	glycolysis	64.71	11 of 17
[Ref.: #66794]	pentose phosphate pathway	63.64	7 of 11
[Ref.: #66794]	ketogluconate metabolism	62.5	5 of 8
[Ref.: #66794]	lysine metabolism	61.9	26 of 42
[Ref.: #66794]	isoprenoid biosynthesis	61.54	16 of 26
[Ref.: #66794]	methionine metabolism	61.54	16 of 26
[Ref.: #66794]	urea cycle	61.54	8 of 13
[Ref.: #66794]	lipid metabolism	61.29	19 of 31
[Ref.: #66794]	oxidative phosphorylation	60.44	55 of 91
[Ref.: #66794]	Entner Doudoroff pathway	60	6 of 10
[Ref.: #66794]	factor 420 biosynthesis	60	3 of 5
[Ref.: #66794]	phenylacetate degradation (aerobic)	60	3 of 5
[Ref.: #66794]	gallate degradation	60	3 of 5
[Ref.: #66794]	arginine metabolism	58.33	14 of 24
[Ref.: #66794]	non-pathway related	57.89	22 of 38
[Ref.: #66794]	ubiquinone biosynthesis	57.14	4 of 7
[Ref.: #66794]	degradation of sugar alcohols	56.25	9 of 16
[Ref.: #66794]	d-mannose degradation	55.56	5 of 9
[Ref.: #66794]	allantoin degradation	55.56	5 of 9
[Ref.: #66794]	cysteine metabolism	55.56	10 of 18
[Ref.: #66794]	tryptophan metabolism	55.26	21 of 38
[Ref.: #66794]	proline metabolism	54.55	6 of 11
[Ref.: #66794]	histidine metabolism	51.72	15 of 29
[Ref.: #66794]	CMP-KDO biosynthesis	50	2 of 4
[Ref.: #66794]	glycine metabolism	50	5 of 10
[Ref.: #66794]	ethanol fermentation	50	1 of 2
[Ref.: #66794]	pantothenate biosynthesis	50	3 of 6
[Ref.: #66794]	ribulose monophosphate pathway	50	1 of 2
[Ref.: #66794]	aminopropanol phosphate biosynthesis	50	1 of 2
[Ref.: #66794]	glycolate and glyoxylate degradation	50	3 of 6
[Ref.: #66794]	butanoate fermentation	50	2 of 4
[Ref.: #66794]	glycogen biosynthesis	50	2 of 4
[Ref.: #66794]	degradation of aromatic, nitrogen containing compounds	50	6 of 12
[Ref.: #66794]	phenylmercury acetate degradation	50	1 of 2
[Ref.: #66794]	sulfate reduction	46.15	6 of 13
[Ref.: #66794]	vitamin B6 metabolism	45.45	5 of 11
[Ref.: #66794]	phenol degradation	45	9 of 20
[Ref.: #66794]	polyamine pathway	43.48	10 of 23
[Ref.: #66794]	glutathione metabolism	42.86	6 of 14
[Ref.: #66794]	tyrosine metabolism	42.86	6 of 14
[Ref.: #66794]	glycogen metabolism	40	2 of 5
[Ref.: #66794]	hydrogen production	40	2 of 5
[Ref.: #66794]	arachidonate biosynthesis	40	2 of 5
[Ref.: #66794]	metabolism of amino sugars and derivatives	40	2 of 5
[Ref.: #66794]	coenzyme M biosynthesis	40	4 of 10
[Ref.: #66794]	phenylpropanoid biosynthesis	38.46	5 of 13
[Ref.: #66794]	IAA biosynthesis	33.33	1 of 3
[Ref.: #66794]	selenocysteine biosynthesis	33.33	2 of 6
[Ref.: #66794]	octane oxidation	33.33	1 of 3
[Ref.: #66794]	(5R)-carbapenem carboxylate biosynthesis	33.33	1 of 3
[Ref.: #66794]	degradation of pentoses	32.14	9 of 28
[Ref.: #66794]	ascorbate metabolism	31.82	7 of 22
[Ref.: #66794]	benzoyl-CoA degradation	28.57	2 of 7
[Ref.: #66794]	degradation of hexoses	27.78	5 of 18
[Ref.: #66794]	dolichyl-diphosphooligosaccharide biosynthesis	27.27	3 of 11
[Ref.: #66794]	cholesterol biosynthesis	27.27	3 of 11
[Ref.: #66794]	3-phenylpropionate degradation	26.67	4 of 15
[Ref.: #66794]	androgen and estrogen metabolism	25	4 of 16
[Ref.: #66794]	dTDPLrhamnose biosynthesis	25	2 of 8
[Ref.: #66794]	lactate fermentation	25	1 of 4
[Ref.: #66794]	toluene degradation	25	1 of 4
[Ref.: #66794]	cyclohexanol degradation	25	1 of 4
[Ref.: #66794]	bile acid biosynthesis, neutral pathway	23.53	4 of 17
[Ref.: #66794]	4-hydroxymandelate degradation	22.22	2 of 9
[Ref.: #66794]	nitrate assimilation	22.22	2 of 9
[Ref.: #66794]	lipid A biosynthesis	22.22	2 of 9
[Ref.: #66794]	arachidonic acid metabolism	22.22	4 of 18
		Only first 10 entries are displayed. Click here to see all.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #7286]	Sample type/isolated from	livestock-manure compost
[Ref.: #7286]	Geographic location (country and/or sea, region)	Ichon
[Ref.: #7286]	Country	Republic of Korea
[Ref.: #7286]	Country ISO 3 Code	KOR
[Ref.: #7286]	Continent	Asia

[Ref.: #23026]	Sample type/isolated from	livestock-manure compost
[Ref.: #23026]	Enrichment culture	trypticase soy agar
[Ref.: #23026]	Enrichment culture temperature	55.0 ̊C
* marker position based on {}

Isolation sources categories

#Engineered	#Agriculture	#Livestock (Husbandry)
#Engineered	#Biodegradation	#Composting
#Host Body Product	#Gastrointestinal tract	#Feces (Stool)

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence DQ348072 (>99% sequence identity) for Ureibacillus thermophilus from Microbeatlas

Aquatic Samples	79
Soil Samples	308
Animal Samples	389
Plant Samples	80
Total Samples	856

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #7286]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #7286]	Ureibacillus thermophilus strain HC148 16S ribosomal RNA gene, partial sequence	DQ348072	1509	ENA	367743 tax ID

[Ref.: #7286]	GC-content	38.5 mol%
[Ref.: #23026]	GC-content	38.5 mol%	high performance liquid chromatography (HPLC)

Availability in culture collections External links

[Ref.: #7286]

Culture collection no.

DSM 17952, KACC 11362

[Ref.: #71052]

SI-ID 406173

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Identifying heat shock response systems from the genomic assembly of Ureibacillus thermophilus LM102 using protein-protein interaction networks.	Sunny JS, Mukund N, Natarajan A, Saleena LM	Gene	10.1016/j.gene.2020.144449	2020	*
Phylogeny	Ureibacillus defluvii sp. nov., isolated from a thermophilic microbial fuel cell.	Zhou S, Tang J, Qin D, Lu Q, Yang G	Int J Syst Evol Microbiol	10.1099/ijs.0.056655-0	2014	*
Phylogeny	Ureibacillus composti sp. nov. and Ureibacillus thermophilus sp. nov., isolated from livestock-manure composts.	Weon HY, Lee SY, Kim BY, Noh HJ, Schumann P, Kim JS, Kwon SW	Int J Syst Evol Microbiol	10.1099/ijs.0.65232-0	2007	*

References

#7286

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 17952

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#23026

Hang-Yeon Weon,Seon-Young Lee,Byung-Yong Kim,Hyung-Jun Noh,Peter Schumann,Jong-Shik Kim,Soon-Wo Kwon: Ureibacillus composti sp. nov. and Ureibacillus thermophilus sp. nov., isolated from livestock-manure composts. IJSEM 57: 2908 - 2911 2007 ( DOI 10.1099/ijs.0.65232-0 , PubMed 18048747 )

#66794

Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg: BRENDA, the ELIXIR core data resource in 2021: new developments and updates. Nucleic Acids Res. 49: D498 - D508 2020 ( DOI 10.1093/nar/gkaa1025 , PubMed 33211880 )

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#71052

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID406173.1 )

* These data were automatically processed and therefore are not curated

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