Strain identifier

BacDive ID: 1401

Type strain: Yes

Species: Ureibacillus thermophilus

Strain Designation: HC148

Strain history: <- Soon-Wo Kwon, HC148

NCBI tax ID(s): 367743 (species)

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General

@ref: 7286

BacDive-ID: 1401

DSM-Number: 17952

keywords: 16S sequence, Bacteria, Gram-negative, motile, rod-shaped, colony-forming

description: Ureibacillus thermophilus HC148 is a Gram-negative, motile, rod-shaped bacterium that forms circular colonies and was isolated from livestock-manure compost.

NCBI tax id

  • NCBI tax id: 367743
  • Matching level: species

strain history

  • @ref: 7286
  • history: <- Soon-Wo Kwon, HC148

doi: 10.13145/bacdive1401.20240510.9

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Bacilli
  • order: Caryophanales
  • family: Caryophanaceae
  • genus: Ureibacillus
  • species: Ureibacillus thermophilus
  • full scientific name: Ureibacillus thermophilus Weon et al. 2007

@ref: 7286

domain: Bacteria

phylum: Firmicutes

class: Bacilli

order: Bacillales

family: Caryophanaceae

genus: Ureibacillus

species: Ureibacillus thermophilus

full scientific name: Ureibacillus thermophilus Weon et al. 2007

strain designation: HC148

type strain: yes

Morphology

cell morphology

  • @ref: 23026
  • gram stain: negative
  • cell length: 2.5-3.5 µm
  • cell width: 0.8-1.2 µm
  • cell shape: rod-shaped
  • motility: yes

colony morphology

@refcolony colorcolony shapemedium used
23026light-browncirculartrypticase soy agar
23026nutrient agar (Oxoid)

Culture and growth conditions

culture medium

  • @ref: 7286
  • name: CASO AGAR (MERCK 105458) (DSMZ Medium 220)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/220
  • composition: Name: CASO AGAR (Merck 105458) (DSMZ Medium 220) Composition: Agar 15.0 g/l Casein peptone 15.0 g/l NaCl 5.0 g/l Soy peptone 5.0 g/l Distilled water

culture temp

@refgrowthtypetemperature
7286positivegrowth50
23026positivegrowth30.0-65.0
23026positivegrowth35.0
23026positivegrowth65.0
23026

culture pH

  • @ref: 23026
  • ability: positive
  • type: growth
  • pH: 6.0-8.0

Physiology and metabolism

spore formation

  • @ref: 23026
  • spore formation: no

halophily

  • @ref: 23026
  • salt: NaCl
  • growth: positive
  • tested relation: growth
  • concentration: <5.0 %

murein

@refmurein short keytype
7286A11.31A4alpha L-Lys-D-Asp
23026A11.31A4alpha L-Lys-D-Asp

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
2302617634D-glucose-builds acid from
2302616899D-mannitol-builds acid from
2302665327D-xylose-builds acid from
2302630849L-arabinose-builds acid from
2302617234glucose-fermentation
23026casein-hydrolysis
230265291gelatin-hydrolysis
2302628017starch-hydrolysis
2302616199urea-hydrolysis
2302617632nitrate-reduction
230264853esculin+hydrolysis
2302618186tyrosine+hydrolysis

metabolite production

@refChebi-IDmetaboliteproduction
2302635581indoleno
2302615688acetoinno

metabolite tests

  • @ref: 23026
  • Chebi-ID: 15688
  • metabolite: acetoin
  • voges-proskauer-test: -

enzymes

@refvalueactivityec
23026catalase+1.11.1.6
23026cytochrome oxidase+1.9.3.1
23026phenylalanine deaminase+4.3.1.5

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinentenrichment cultureenrichment culture temperature
7286livestock-manure compostIchonRepublic of KoreaKORAsia
23026livestock-manure composttrypticase soy agar55.0

isolation source categories

Cat1Cat2Cat3
#Engineered#Agriculture#Livestock (Husbandry)
#Engineered#Biodegradation#Composting
#Host Body Product#Gastrointestinal tract#Feces (Stool)

taxonmaps

  • @ref: 69479
  • File name: preview.99_78675.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_3;96_8510;97_42068;98_54912;99_78675&stattab=map
  • Last taxonomy: Ureibacillus thermophilus
  • 16S sequence: DQ348072
  • Sequence Identity:
  • Total samples: 856
  • soil counts: 308
  • aquatic counts: 79
  • animal counts: 389
  • plant counts: 80

Safety information

risk assessment

  • @ref: 7286
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 7286
  • description: Ureibacillus thermophilus strain HC148 16S ribosomal RNA gene, partial sequence
  • accession: DQ348072
  • length: 1509
  • database: nuccore
  • NCBI tax ID: 367743

GC content

@refGC-contentmethod
728638.5
2302638.5high performance liquid chromatography (HPLC)

External links

@ref: 7286

culture collection no.: DSM 17952, KACC 11362

straininfo link

  • @ref: 71052
  • straininfo: 406173

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny18048747Ureibacillus composti sp. nov. and Ureibacillus thermophilus sp. nov., isolated from livestock-manure composts.Weon HY, Lee SY, Kim BY, Noh HJ, Schumann P, Kim JS, Kwon SWInt J Syst Evol Microbiol10.1099/ijs.0.65232-02007Amino Acids/analysis, Animals, Animals, Domestic, Bacillaceae/chemistry/*classification/genetics/*isolation & purification, Base Composition, Cell Wall/chemistry, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Fatty Acids/analysis, Genes, rRNA, Korea, Manure/*microbiology, Molecular Sequence Data, Nucleic Acid Hybridization, Phospholipids/analysis, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Sequence Homology, Nucleic Acid, Vitamin K 2/analysisGenetics
Phylogeny24491829Ureibacillus defluvii sp. nov., isolated from a thermophilic microbial fuel cell.Zhou S, Tang J, Qin D, Lu Q, Yang GInt J Syst Evol Microbiol10.1099/ijs.0.056655-02014Bacterial Typing Techniques, Base Composition, Bioelectric Energy Sources/*microbiology, Biofilms, DNA, Bacterial/genetics, Fatty Acids/chemistry, Molecular Sequence Data, Nucleic Acid Hybridization, Peptidoglycan/chemistry, Phospholipids/chemistry, *Phylogeny, Planococcaceae/*classification/genetics/isolation & purification, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Vitamin K 2/analogs & derivatives/chemistryGenetics
Phylogeny32032746Identifying heat shock response systems from the genomic assembly of Ureibacillus thermophilus LM102 using protein-protein interaction networks.Sunny JS, Mukund N, Natarajan A, Saleena LMGene10.1016/j.gene.2020.1444492020Bacterial Proteins/chemistry/genetics/*metabolism, DNA Repair, Gene Expression Regulation, Bacterial, *Genome, Bacterial, *Heat-Shock Response, Phylogeny, Planococcaceae/*genetics, *Protein Interaction Maps, RNA, Ribosomal, 16S/genetics, Transcription, GeneticGenetics

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
7286Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 17952)https://www.dsmz.de/collection/catalogue/details/culture/DSM-17952
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
23026Hang-Yeon Weon,Seon-Young Lee,Byung-Yong Kim,Hyung-Jun Noh,Peter Schumann,Jong-Shik Kim,Soon-Wo Kwon10.1099/ijs.0.65232-0Ureibacillus composti sp. nov. and Ureibacillus thermophilus sp. nov., isolated from livestock-manure compostsIJSEM 57: 2908-2911 200718048747
66794Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg10.1093/nar/gkaa1025BRENDA, the ELIXIR core data resource in 2021: new developments and updatesNucleic Acids Res. 49: D498-D508 202033211880
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
71052Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID406173.1StrainInfo: A central database for resolving microbial strain identifiers