Name: Actinomyces haliotis WL80
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 140064

Type strain:

Species: Actinomyces haliotis

Strain Designation: WL80

Culture col. no.: DSM 105491, JCM 18848, KACC 17211

Strain history: J.-W. Bae WL80.

NCBI tax ID(s): 1280843 (species)

SI-ID 401106

DSM 105491

Special Collections

DSMZ
JCM

Section

When using BacDive for research please cite our paper

Actinomyces haliotis WL80 is a mesophilic bacterium that was isolated from Intestinal tract of the abalone Haliotis discus hannai.

mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	09-12-2024 (DD-MM-YYYY)
	Domain	*Bacteria*
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Actinomycetales*
	Family	*Actinomycetaceae*
	Genus	*Actinomyces*
	Species	**Actinomyces haliotis**
	Full Scientific Name (LPSN)	Actinomyces haliotis Hyun et al. 2014

Information on morphological and physiological properties Morphology

[Ref.: #125439]	Gram stain	positive Confidence in %98.8
[Ref.: #125438]	Gram stain	positive Confidence in %93.238

[Ref.: #125438]	Motility	no Confidence in %93.375

Information on culture and growth conditions Culture and growth conditions

[Ref.: #42671]

Culture medium

PYG MEDIUM (MODIFIED) (DSMZ Medium 104)

[Ref.: #42671]

Culture medium growth

[Ref.: #42671]

Culture medium link

Medium recipe at MediaDive

[Ref.: #42671]

Culture medium composition

expand / minimize

[Ref.: #42671]

Culture medium

BHI MEDIUM (DSMZ Medium 215)

[Ref.: #42671]

Culture medium growth

[Ref.: #42671]

Culture medium link

Medium recipe at MediaDive

[Ref.: #42671]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #42671]			growth	37 °C
[Ref.: #67770]			growth	30 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #125439]

Oxygen tolerance

facultative anaerobe Confidence in %95.5

[Ref.: #67770]

Observation

quinones: MK-10(H₄)

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #42671]	Sample type/isolated from	Intestinal tract of the abalone Haliotis discus hannai
[Ref.: #42671]	Host species	Haliotis discus hannai
[Ref.: #42671]	Geographic location (country and/or sea, region)	Northern coast of Jeju
[Ref.: #42671]	Country	Republic of Korea
[Ref.: #42671]	Country ISO 3 Code	KOR
[Ref.: #42671]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Intestinal tract of an abalone, Haliotis discus hannai
[Ref.: #67770]	Host species	Haliotis discus hannai
* marker position based on {}

Isolation sources categories

#Host	#Invertebrates (Other)	#Mollusca
#Host Body-Site	#Gastrointestinal tract	-

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence KC196072 (>99% sequence identity) for Actinomyces haliotis from Microbeatlas

Aquatic Samples	174
Soil Samples	52
Animal Samples	1217
Plant Samples	44
Total Samples	1487

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #42671]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #42671]	Actinomyces haliotis strain WL80 from South Korea 16S ribosomal RNA gene, partial sequence	KC196072	1459	GenBank ENA	1280843 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Actinomyces haliotis JCM 18848	GCA_015355765	contig	GenBank ENA	1280843 tax ID	*
[Ref.: #66792]	Actinomyces haliotis strain JCM 18848	1280843.3	wgs	PATRIC	1280843 tax ID	*

[Ref.: #42671]	GC-content	70.4 mol%
[Ref.: #67770]	GC-content	70.4 mol%	thermal denaturation, midpoint method (Tm)

Data predicted using genome information as a basis Genome-based predictions

	Model	Trait	Prediction	Confidence in %	In training data
	Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Actinomyces haliotis strain JCM 18848 PATRIC: 1280843.3
[Ref.: #125438]	gram-positive	gram-positiveⓘ	yes	93.238	no
[Ref.: #125438]	anaerobic	anaerobicⓘ	no	85.806	no
[Ref.: #125438]	spore-forming	spore-formingⓘ	no	85.345	no
[Ref.: #125438]	aerobic	aerobicⓘ	no	64.763	no
[Ref.: #125438]	thermophile	thermophilicⓘ	no	97.083	yes
[Ref.: #125438]	motile2+	flagellatedⓘ	no	93.375	no

	Model	Trait	Prediction	Confidence in %
	Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Actinomyces haliotis JCM 18848 NCBI: GCA_015355765
[Ref.: #125439]	BacteriaNet	spore_formationⓘ	yes	61.7
[Ref.: #125439]	BacteriaNet	motilityⓘ	no	85.9
[Ref.: #125439]	BacteriaNet	gram_stainⓘ	positive	98.8
[Ref.: #125439]	BacteriaNet	oxygen_toleranceⓘ	facultative anaerobe	95.5

Availability in culture collections External links

[Ref.: #42671]

Culture collection no.

DSM 105491, JCM 18848, KACC 17211

[Ref.: #96478]

SI-ID 401106

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Actinomyces haliotis sp. nov., a bacterium isolated from the gut of an abalone, Haliotis discus hannai.	Hyun DW, Shin NR, Kim MS, Kim PS, Kim JY, Whon TW, Bae JW	Int J Syst Evol Microbiol	10.1099/ijs.0.055350-0	2013	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#42671

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 105491

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#96478

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID401106.1 )

#125438

Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )

#125439

Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .

* These data were automatically processed and therefore are not curated

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Actinomyces haliotis strain JCM 18848

Actinomyces haliotis JCM 18848

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