Actinomyces haliotis (DSM 105491, JCM 18848, KACC 17211)

Name: Actinomyces haliotis (DSM 105491, JCM 18848, KACC 17211)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 140064

Type strain

Strain Designation WL80

Culture col. no. DSM 105491 JCM 18848 KACC 17211 WL80

NCBI tax ID(s) 1280843

Special Collections DSMZ JCM

History DSMZ <- KACC; KACC 17211 <- J.-W. Bae, Kyung Hee Univ., Seoul, Republic of Korea; WL80 JCM <-- J.-W. Bae WL80.

Links

Actinomyces haliotis WL80 is a bacterium that was isolated from Intestinal tract of the abalone Haliotis discus hannai.

genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 401106

JCM 18848,DSM 105491

@ref 20215

Last LPSN update 2026-05-29 08:39:38

Domain Bacteria

Phylum Actinomycetota

Class Actinomycetes

Order Actinomycetales

Family Actinomycetaceae

Genus Actinomyces

Species Actinomyces haliotis

Full scientific name Actinomyces haliotis Hyun et al. 2014

Morphology

Cell morphology

@ref	Confidence	Gram stain
125438	93.375
125438	93.238	positive
125439	96.424	positive
125439	90.406

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
42671	PYG MEDIUM (MODIFIED) (DSMZ Medium 104)		Medium recipe at MediaDive	Name: PYG MEDIUM (modified) (DSMZ Medium 104) Composition: Yeast extract 10.0 g/l Peptone 5.0 g/l Trypticase peptone 5.0 g/l Beef extract 5.0 g/l Glucose 5.0 g/l L-Cysteine HCl x H2O 0.5 g/l NaHCO3 0.4 g/l NaCl 0.08 g/l K2HPO4 0.04 g/l KH2PO4 0.04 g/l MgSO4 x 7 H2O 0.02 g/l CaCl2 x 2 H2O 0.01 g/l Hemin 0.005 g/l Ethanol 0.0038 g/l Resazurin 0.001 g/l Tween 80 Vitamin K1 NaOH Distilled water
42671	BHI MEDIUM (DSMZ Medium 215)		Medium recipe at MediaDive	Name: BHI MEDIUM (DSMZ Medium 215) Composition: Brain heart infusion 37.0 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
42671	positive	growth	37
67770	positive	growth	30

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125439	facultative anaerobe	97.442

Observation

67770

Observationquinones: MK-10(H₄)

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host	#Invertebrates (Other)	#Mollusca
#Host Body-Site	#Gastrointestinal tract	-

Isolation

@ref	Sample type	Host species	Geographic location	Country	Country ISO 3 Code	Continent
42671	Intestinal tract of the abalone Haliotis discus hannai	Haliotis discus hannai	Northern coast of Jeju	Republic of Korea	KOR	Asia
67770	Intestinal tract of an abalone, Haliotis discus hannai	Haliotis discus hannai

Taxonmaps

69479

Global distribution of 16S sequence KC196072 (>99% sequence identity) for Actinomyces haliotis from Microbeatlas

Aquatic Samples	174
Soil Samples	52
Animal Samples	1217
Plant Samples	44
Total Samples	1487

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
42671	1	Risk group (German classification)

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM1535576v1 assembly for Actinomyces haliotis JCM 18848	contig	GCA_015355765	1280843.3	2996053872	1280843	70.89

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
42671	Actinomyces haliotis strain WL80 from South Korea 16S ribosomal RNA gene, partial sequence	KC196072	1459		1280843

GC content

@ref	GC-content (mol%)	Method
42671	70.4
67770	70.4	thermal denaturation, midpoint method (Tm)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: ASM1535576v1 assembly for Actinomyces haliotis JCM 18848
NCBI: GCA_015355765

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	facultative anaerobe	97.44	no
125439	motility	BacteriaNetⓘ	no	90.41	no
125439	gram_stain	BacteriaNetⓘ	positive	96.42	no
125439	spore_formation	BacteriaNetⓘ	yes	48.30	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Actinomyces haliotis strain JCM 18848
PATRIC: 1280843.3

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	93.24	no
125438	anaerobic	anaerobicⓘ	no	85.81	no
125438	spore-forming	spore-formingⓘ	no	85.35	no
125438	aerobic	aerobicⓘ	no	64.76	no
125438	thermophilic	thermophileⓘ	no	97.08	yes
125438	flagellated	motile2+ⓘ	no	93.38	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Actinomyces haliotis sp. nov., a bacterium isolated from the gut of an abalone, Haliotis discus hannai.	Hyun DW, Shin NR, Kim MS, Kim PS, Kim JY, Whon TW, Bae JW	Int J Syst Evol Microbiol	10.1099/ijs.0.055350-0	2013

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#42671	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 105491
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

Content

About us

Actinomyces haliotis (DSM 105491, JCM 18848, KACC 17211)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Observation

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_015355765

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

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