Strain identifier
BacDive ID: 140064
Type strain: 
Species: Actinomyces haliotis
Strain Designation: WL80
Strain history: J.-W. Bae WL80.
NCBI tax ID(s): 1280843 (species)
version 8.1 (current version)
General
@ref: 42671
BacDive-ID: 140064
DSM-Number: 105491
keywords: genome sequence, 16S sequence, Bacteria, mesophilic
description: Actinomyces haliotis WL80 is a mesophilic bacterium that was isolated from Intestinal tract of the abalone Haliotis discus hannai.
NCBI tax id
- NCBI tax id: 1280843
- Matching level: species
strain history
| @ref | history |
|---|---|
| 42671 | <- KACC; KACC 17211 <- J.-W. Bae, Kyung Hee Univ., Seoul, Republic of Korea; WL80 |
| 67770 | J.-W. Bae WL80. |
doi: 10.13145/bacdive140064.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Actinomycetales
- family: Actinomycetaceae
- genus: Actinomyces
- species: Actinomyces haliotis
- full scientific name: Actinomyces haliotis Hyun et al. 2014
@ref: 42671
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Actinomycetales
family: Actinomycetaceae
genus: Actinomyces
species: Actinomyces haliotis
full scientific name: Actinomyces haliotis Hyun et al. 2014
strain designation: WL80
type strain: yes
Morphology
cell morphology
| @ref | motility | confidence | gram stain |
|---|---|---|---|
| 69480 | no | 95.747 | |
| 69480 | 100 | positive |
Culture and growth conditions
culture medium
| @ref | name | growth | link | composition |
|---|---|---|---|---|
| 42671 | PYG MEDIUM (MODIFIED) (DSMZ Medium 104) | yes | https://mediadive.dsmz.de/medium/104 | Name: PYG MEDIUM (modified) (DSMZ Medium 104) Composition: Yeast extract 10.0 g/l Peptone 5.0 g/l Trypticase peptone 5.0 g/l Beef extract 5.0 g/l Glucose 5.0 g/l L-Cysteine HCl x H2O 0.5 g/l NaHCO3 0.4 g/l NaCl 0.08 g/l K2HPO4 0.04 g/l KH2PO4 0.04 g/l MgSO4 x 7 H2O 0.02 g/l CaCl2 x 2 H2O 0.01 g/l Hemin 0.005 g/l Ethanol 0.0038 g/l Resazurin 0.001 g/l Tween 80 Vitamin K1 NaOH Distilled water |
| 42671 | BHI MEDIUM (DSMZ Medium 215) | yes | https://mediadive.dsmz.de/medium/215 | Name: BHI MEDIUM (DSMZ Medium 215) Composition: Brain heart infusion 37.0 g/l Distilled water |
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 42671 | positive | growth | 37 | mesophilic |
| 67770 | positive | growth | 30 | mesophilic |
Physiology and metabolism
spore formation
| @ref | spore formation | confidence |
|---|---|---|
| 69481 | no | 100 |
| 69480 | no | 100 |
observation
- @ref: 67770
- observation: quinones: MK-10(H4)
Isolation, sampling and environmental information
isolation
| @ref | sample type | host species | geographic location | country | origin.country | continent |
|---|---|---|---|---|---|---|
| 42671 | Intestinal tract of the abalone Haliotis discus hannai | Haliotis discus hannai | Northern coast of Jeju | Republic of Korea | KOR | Asia |
| 67770 | Intestinal tract of an abalone, Haliotis discus hannai | Haliotis discus hannai |
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Host | #Invertebrates (Other) | #Mollusca |
| #Host Body-Site | #Gastrointestinal tract |
taxonmaps
- @ref: 69479
- File name: preview.99_172498.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_124;96_1853;97_2223;98_19987;99_172498&stattab=map
- Last taxonomy: Actinomyces haliotis
- 16S sequence: KC196072
- Sequence Identity:
- Total samples: 1487
- soil counts: 52
- aquatic counts: 174
- animal counts: 1217
- plant counts: 44
Safety information
risk assessment
- @ref: 42671
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 42671
- description: Actinomyces haliotis strain WL80 from South Korea 16S ribosomal RNA gene, partial sequence
- accession: KC196072
- length: 1459
- database: ena
- NCBI tax ID: 1280843
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Actinomyces haliotis JCM 18848 | GCA_015355765 | contig | ncbi | 1280843 |
| 66792 | Actinomyces haliotis strain JCM 18848 | 1280843.3 | wgs | patric | 1280843 |
GC content
| @ref | GC-content | method |
|---|---|---|
| 42671 | 70.4 | |
| 67770 | 70.4 | thermal denaturation, midpoint method (Tm) |
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| spore-forming | no | 100 | no |
| motile | no | 90.838 | no |
| gram-positive | yes | 95.152 | no |
| anaerobic | no | 96.045 | no |
| aerobic | no | 87.84 | no |
| halophile | no | 82.368 | no |
| spore-forming | no | 95.796 | no |
| thermophile | no | 97.389 | yes |
| glucose-util | yes | 87.234 | no |
| flagellated | no | 96.281 | no |
| glucose-ferment | yes | 75.954 | no |
External links
@ref: 42671
culture collection no.: DSM 105491, JCM 18848, KACC 17211
straininfo link
- @ref: 96478
- straininfo: 401106
literature
- topic: Phylogeny
- Pubmed-ID: 24096355
- title: Actinomyces haliotis sp. nov., a bacterium isolated from the gut of an abalone, Haliotis discus hannai.
- authors: Hyun DW, Shin NR, Kim MS, Kim PS, Kim JY, Whon TW, Bae JW
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/ijs.0.055350-0
- year: 2013
- mesh: Actinomyces/*classification/genetics/isolation & purification, Animals, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Gastrointestinal Tract/*microbiology, Gastropoda/*microbiology, Molecular Sequence Data, Nucleic Acid Hybridization, *Phylogeny, RNA, Ribosomal, 16S/genetics, Republic of Korea, Sequence Analysis, DNA, Ubiquinone/chemistry
- topic2: Genetics
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 42671 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-105491 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 105491) | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ | |
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | Predictions based on the model GenomeNet Sporulation v. 1 | 10.21203/rs.3.rs-2527258/v1 | |
| 96478 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID401106.1 |