Name: Azospirillum picis DSM 19922
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 13999

Type strain:

Species: Azospirillum picis

Culture col. no.: DSM 19922, CCUG 55431, IMMIB TAR-3

Strain history: <- A. F. Yassin, Inst. Med. Mikrobiol., Univ. Bonn, Germany; IMMIB TAR-3 <- B. Arun

NCBI tax ID(s): 488438 (species)

SI-ID 403529

DSM 19922, CCUG 55431

Special Collections

Section

Azospirillum picis DSM 19922 is an aerobe, Gram-negative, motile bacterium that was isolated from discarded road tar.

Gram-negative
motile
rod-shaped
aerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Alphaproteobacteria*
	Order	*Rhodospirillales*
	Family	*Azospirillaceae*
	Genus	*Azospirillum*
	Species	**Azospirillum picis**
	Full Scientific Name (LPSN)	Azospirillum picis Lin et al. 2009

Information on morphological and physiological properties Morphology

[Ref.: #32645]	Gram stain	negative

[Ref.: #32645]	Cell shape	rod-shaped

[Ref.: #32645]	Motility	yes

[Ref.: #32645]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

[Ref.: #8391]

Culture medium

TRYPTONE SOYA BROTH (TSB) (DSMZ Medium 545)

[Ref.: #8391]

Culture medium growth

[Ref.: #8391]

Culture medium link

Medium recipe at MediaDive

[Ref.: #8391]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #8391]	growth	37 °C
[Ref.: #32645]	growth	22-37 °C
[Ref.: #32645]	optimum	29.5 °C
[Ref.: #60586]	growth	30-37 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #32645]	Oxygen tolerance	aerobe
[Ref.: #60586]	Oxygen tolerance	aerobe

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #32645]	arabinose ChEBI	+	carbon source
[Ref.: #32645]	esculin ChEBI	+	hydrolysis
[Ref.: #32645]	fructose ChEBI	+	carbon source
[Ref.: #32645]	galactose ChEBI	+	carbon source
[Ref.: #32645]	glucose ChEBI	+	carbon source
[Ref.: #32645]	glycerol ChEBI	+	carbon source
[Ref.: #32645]	L-arabitol ChEBI	+	carbon source
[Ref.: #32645]	mannitol ChEBI	+	carbon source
[Ref.: #32645]	nitrate ChEBI	+	reduction
[Ref.: #32645]	ribose ChEBI	+	carbon source
[Ref.: #32645]	sorbitol ChEBI	+	carbon source
[Ref.: #32645]	xylose ChEBI	+	carbon source
	Only first 10 entries are displayed. Click here to see all.

	Enzyme	Enzyme activity	EC number
[Ref.: #32645]	catalase	+	1.11.1.6
[Ref.: #32645]	cytochrome oxidase	+	1.9.3.1
[Ref.: #32645]	urease	+	3.5.1.5

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #8391]	Sample type/isolated from	discarded road tar
[Ref.: #8391]	Geographic location (country and/or sea, region)	Taichung City area
[Ref.: #8391]	Country	Taiwan, Province of China
[Ref.: #8391]	Country ISO 3 Code	TWN
[Ref.: #8391]	Continent	Asia

[Ref.: #60586]	Sample type/isolated from	Tar,discarded road tar
[Ref.: #60586]	Sampling date	2007
[Ref.: #60586]	Geographic location (country and/or sea, region)	Taichung City area
[Ref.: #60586]	Country	Taiwan, Province of China
[Ref.: #60586]	Country ISO 3 Code	TWN
[Ref.: #60586]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Engineered	#Industrial	#Engineered product
#Engineered	#Waste	#Solid waste

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #8391]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #8391]	Azospirillum picis partial 16S rRNA gene, type strain IMMIB TAR-3T	AM922283	1445	GenBank ENA	488438 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Azospirillum picis DSM 19922	2928263341	draft	JGI IMG/M	488438 tax ID	*

Availability in culture collections External links

[Ref.: #8391]

Culture collection no.

DSM 19922, CCUG 55431, IMMIB TAR-3

[Ref.: #83170]

SI-ID 403529

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Azospirillum thermophilum sp. nov., isolated from a hot spring.	Zhao ZL, Ming H, Ding CL, Ji WL, Cheng LJ, Niu MM, Zhang YM, Zhang LY, Meng XL, Nie GX	Int J Syst Evol Microbiol	10.1099/ijsem.0.003788	2020	*
Phylogeny	Azospirillum soli sp. nov., a nitrogen-fixing species isolated from agricultural soil.	Lin SY, Hameed A, Liu YC, Hsu YH, Lai WA, Shen FT, Young CC	Int J Syst Evol Microbiol	10.1099/ijsem.0.000618	2015	*
Phylogeny	Azospirillum fermentarium sp. nov., a nitrogen-fixing species isolated from a fermenter.	Lin SY, Liu YC, Hameed A, Hsu YH, Lai WA, Shen FT, Young CC	Int J Syst Evol Microbiol	10.1099/ijs.0.050872-0	2013	*
Phylogeny	Azospirillum picis sp. nov., isolated from discarded tar.	Lin SY, Young CC, Hupfer H, Siering C, Arun AB, Chen WM, Lai WA, Shen FT, Rekha PD, Yassin AF	Int J Syst Evol Microbiol	10.1099/ijs.0.65837-0	2009	*

References

#8391

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 19922

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#32645

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #28856 (see below)

#60586 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 55431

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#83170

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID403529.1 )

#28856

IJSEM 761 2009 ( DOI 10.1099/ijs.0.65837-0 , PubMed 19329602 )

* These data were automatically processed and therefore are not curated

Change proposal

You found an error in BacDive? Please tell us about it!

Note that changes will be reviewed and judged. If your changes are legitimate, changes will occur within the next BacDive update. Only proposed changes supported by the according reference will be reviewed. The BacDive team reserves the right to reject proposed changes.

Search for species Azospirillum picis in external resources:
SILVA
BRENDA
PANGAEA
GBIF