Strain identifier

BacDive ID: 13999

Type strain: Yes

Species: Azospirillum picis

Strain history: <- A. F. Yassin, Inst. Med. Mikrobiol., Univ. Bonn, Germany; IMMIB TAR-3 <- B. Arun

NCBI tax ID(s): 488438 (species)

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General

@ref: 8391

BacDive-ID: 13999

DSM-Number: 19922

keywords: genome sequence, 16S sequence, Bacteria, aerobe, Gram-negative, motile, rod-shaped

description: Azospirillum picis DSM 19922 is an aerobe, Gram-negative, motile bacterium that was isolated from discarded road tar.

NCBI tax id

  • NCBI tax id: 488438
  • Matching level: species

strain history

  • @ref: 8391
  • history: <- A. F. Yassin, Inst. Med. Mikrobiol., Univ. Bonn, Germany; IMMIB TAR-3 <- B. Arun

doi: 10.13145/bacdive13999.20240510.9

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Alphaproteobacteria
  • order: Rhodospirillales
  • family: Azospirillaceae
  • genus: Azospirillum
  • species: Azospirillum picis
  • full scientific name: Azospirillum picis Lin et al. 2009

@ref: 8391

domain: Bacteria

phylum: Proteobacteria

class: Alphaproteobacteria

order: Rhodospirillales

family: Azospirillaceae

genus: Azospirillum

species: Azospirillum picis

full scientific name: Azospirillum picis Lin et al. 2009

type strain: yes

Morphology

cell morphology

  • @ref: 32645
  • gram stain: negative
  • cell shape: rod-shaped
  • motility: yes

pigmentation

  • @ref: 32645
  • production: yes

Culture and growth conditions

culture medium

  • @ref: 8391
  • name: TRYPTONE SOYA BROTH (TSB) (DSMZ Medium 545)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/545
  • composition: Name: TRYPTONE SOYA BROTH (TSB) (DSMZ Medium 545) Composition: Casein peptone 17.0 g/l NaCl 5.0 g/l Soy peptone 3.0 g/l D(+)-Glucose 2.5 g/l K2HPO4 2.5 g/l Distilled water

culture temp

@refgrowthtypetemperature
8391positivegrowth37
32645positivegrowth22-37
32645positiveoptimum29.5
60586positivegrowth30-37

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
32645aerobe
60586aerobe

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
3264522599arabinose+carbon source
3264518403L-arabitol+carbon source
3264528757fructose+carbon source
3264528260galactose+carbon source
3264517234glucose+carbon source
3264517754glycerol+carbon source
3264529864mannitol+carbon source
3264533942ribose+carbon source
3264530911sorbitol+carbon source
3264518222xylose+carbon source
326454853esculin+hydrolysis
3264517632nitrate+reduction

enzymes

@refvalueactivityec
32645catalase+1.11.1.6
32645cytochrome oxidase+1.9.3.1
32645urease+3.5.1.5

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinentsampling date
8391discarded road tarTaichung City areaTaiwan, Province of ChinaTWNAsia
60586Tar,discarded road tarTaichung City areaTaiwan, Province of ChinaTWNAsia2007

isolation source categories

Cat1Cat2Cat3
#Engineered#Industrial#Engineered product
#Engineered#Waste#Solid waste

Safety information

risk assessment

  • @ref: 8391
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 8391
  • description: Azospirillum picis partial 16S rRNA gene, type strain IMMIB TAR-3T
  • accession: AM922283
  • length: 1445
  • database: nuccore
  • NCBI tax ID: 488438

Genome sequences

  • @ref: 66792
  • description: Azospirillum picis DSM 19922
  • accession: 2928263341
  • assembly level: draft
  • database: img
  • NCBI tax ID: 488438

External links

@ref: 8391

culture collection no.: DSM 19922, CCUG 55431, IMMIB TAR-3

straininfo link

  • @ref: 83170
  • straininfo: 403529

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny19329602Azospirillum picis sp. nov., isolated from discarded tar.Lin SY, Young CC, Hupfer H, Siering C, Arun AB, Chen WM, Lai WA, Shen FT, Rekha PD, Yassin AFInt J Syst Evol Microbiol10.1099/ijs.0.65837-02009Azospirillum/chemistry/*classification/genetics/*isolation & purification, Bacterial Typing Techniques, Cluster Analysis, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, *Environmental Microbiology, Fatty Acids/analysis, Molecular Sequence Data, Phylogeny, Quinones/analysis, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Sequence Homology, Nucleic AcidGenetics
Phylogeny23645021Azospirillum fermentarium sp. nov., a nitrogen-fixing species isolated from a fermenter.Lin SY, Liu YC, Hameed A, Hsu YH, Lai WA, Shen FT, Young CCInt J Syst Evol Microbiol10.1099/ijs.0.050872-02013Azospirillum/*classification/genetics/isolation & purification, Bacterial Typing Techniques, Base Composition, Bioreactors/*microbiology, DNA, Bacterial/genetics, Fatty Acids/analysis, *Fermentation, Molecular Sequence Data, Nitrogen Fixation, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Taiwan, Ubiquinone/analysisGenetics
Phylogeny26382036Azospirillum soli sp. nov., a nitrogen-fixing species isolated from agricultural soil.Lin SY, Hameed A, Liu YC, Hsu YH, Lai WA, Shen FT, Young CCInt J Syst Evol Microbiol10.1099/ijsem.0.0006182015Azospirillum/*classification/genetics/isolation & purification, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Molecular Sequence Data, *Nitrogen Fixation, Nucleic Acid Hybridization, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology, Taiwan, Ubiquinone/chemistryGenetics
Phylogeny31651377Azospirillum thermophilum sp. nov., isolated from a hot spring.Zhao ZL, Ming H, Ding CL, Ji WL, Cheng LJ, Niu MM, Zhang YM, Zhang LY, Meng XL, Nie GXInt J Syst Evol Microbiol10.1099/ijsem.0.0037882020Azospirillum/*classification/isolation & purification, Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/genetics, Fatty Acids/chemistry, Hot Springs/*microbiology, Nucleic Acid Hybridization, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology, Ubiquinone/analogs & derivatives/chemistryTranscriptome

Reference

@idauthorscataloguedoi/urltitleID_cross_referencepubmed
8391Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 19922)https://www.dsmz.de/collection/catalogue/details/culture/DSM-19922
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
32645Barberan A, Caceres Velazquez H, Jones S, Fierer N.10.1128/mSphere.00237-17Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information2885628776041
60586Curators of the CCUGCulture Collection University of Gothenburg (CCUG) (CCUG 55431)https://www.ccug.se/strain?id=55431
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
83170Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID403529.1StrainInfo: A central database for resolving microbial strain identifiers